BAC Information

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BAC

Clone NameB6Ng01-268L11
Chromosome7 (Build37)8 (Build37)
Map Location 98,798,698 - 98,799,01647,302,488 - 47,303,674
singlet/doubletsingletsinglet
Overlap geneDlg2
Upstream geneLOC666689, LOC621816, LOC100039943
Downstream geneCcdc90b, Ankrd42, Pcf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268L11.bB6Ng01-268L11.g
ACCGA071501GA071502
length2861,197
definitionB6Ng01-268L11.b B6Ng01-268L11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,798,698 - 98,799,016)(47,302,488 - 47,303,674)
sequence
accagggaaatgatctaggcctagaattttctttgggaaaggattttaaa
ttctgaattaattttctttaacacatctaagactattcagattttttctt
cttgctcacttttaatattttgtgaattttaaagatctaatctacttcat
ttaaactgatatatacactcatctaaaactgtattcaaggcattttcctt
tgagatgttgtcatccactcttaggtgtctactattgccctgtatatgtg
cgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtg

gaattctgcatcatcagtgccctgcagagcatttggggaccagaagcaac
agtcaataatgctgataggaaggtgaaaagggggacctgatttgtgccat
tttaattctgatggagaaaagcaaaagagaaatgactacaggaggaggta
gagagtgaaccatttctacagctataagggaggaaaaaggcagggggtgg
tgagatggctcagctgttaaaagtagttactgctcttccagaggacctga
gttcaattcccagcaattccatcaggcagcttatactacctgtagctcta
gttgctgcacacatttggtacccatcacctcttgctgccaaacacacaaa
aacaaaaattaaaaataaacatgaaaaaagatgcttactgtagtttcaat
ggaagcattttggttgattctattttctaagtcctgtattgtcatggggg
gcatgtcttctaatagggactttacctatagacaattatagaaaactctc
attatgttttatgatgcatattgtagcttgaaatcatgaagctactctca
gcaagaatcatgggaaggtgtttattctcttgttgtgtctagagcagtgt
ggcatgtgactgtgtctagtacctagcattggtctgcactcaacaactca
cacatagtcctatacagtcaaagcatattttgggtgttgaagaacctagt
cagtaaaagtgcttgccttgcaattgtggcccgagtttgactcccagatg
tgtgtttaaaaaagaaaaaagaaaaaaaagaaaaggcaggtaggcatgga
aaacctggacaccaagagacccttacaaaagagaaaaaaaaggtaggtgc
acccgaggaacgaacgtcacccaagttgtcctctgtgcacatgcacgaat
gcataaatgcataaataaacaaaccaacaaataaatctaatttgcttatg
ccaattgagcgcgtagaagttctgtgcagctggaaagtcacagtggctcc
acagttattgtgctaggcaattggcttttctttatttggtggatcttttg
ctgttctccagtcccaaagaacagctcatactgattgtcttttcctacag
aggcttgcctgccgctgccgaacctccagggacactcatgagcatagaga
gacagggcccctgtccatatctgggaatgcctttgtcctgatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_98798698_98799016
seq2: B6Ng01-268L11.b_71_338 (reverse)

seq1  CACATACACACACACACACACACACACACACACACACTCATATATATAAT  50
      ||||||||||||||||||||||||||||||||||| | ||||||      
seq2  CACATACACACACACACACACACACACACACACACGCACATATA------  44

seq1  CAGATGGAATATGGAAAGTAAGTAACCTTTGTAACCTTCACCTTGAAGG-  99
      |||  || | || | |   |  |||   | |    |  || ||  |||| 
seq2  CAG--GGCA-ATAGTAGACACCTAAGAGTGGATGACAACATCTCAAAGGA  91

seq1  --ATGGAATGAAATTAATGGATAGGATGACCTTCTA---AACTTTATGTT  144
        |||   ||||  ||  |  |  |||||   | ||    | ||||  | 
seq2  AAATGCCTTGAA--TACAGTTTTAGATGAGTGTATATATCAGTTTAAATG  139

seq1  AAG--GATT-GA----TAAAATAATGATCGCAATAGTTACTGGCATATTG  187
      |||  |||| ||    ||||||     || |||           ||||  
seq2  AAGTAGATTAGATCTTTAAAAT-----TCACAA----------AATAT--  172

seq1  GTGTTTTATAAACATGGGTTTGTCTCATGCAATTTCCCTTGTTTCAACAA  237
              ||||  || |       || | |               | ||
seq2  --------TAAAAGTGAG-------CAAGAA--------------GAAAA  193

seq1  AATCT-AATAATTTTATTGAAGTTGATTAACCTATAACTTTCTTTCTAG-  285
      ||||| |||| | |||  || ||   ||||   | ||  ||  ||| || 
seq2  AATCTGAATAGTCTTA--GATGT--GTTAA---AGAAAATTAATTC-AGA  235

seq1  ---TCAAGTCAGCTGAATTCAAAAGAAAATTCTAGGC  319
         | || ||  ||   | | ||||||||||||||||
seq2  ATTTAAAATC--CT--TTCCCAAAGAAAATTCTAGGC  268


seq1: chr8_47302488_47303674
seq2: B6Ng01-268L11.g_65_1261 (reverse)

seq1  AAGAA--CAGGACAAA-GCAT--CCAGATAT-GACAGGGGCCCTG-CTCT  43
      |||||  ||||||||| ||||  |||||||| ||||||||||||| ||||
seq2  AAGAAATCAGGACAAAGGCATTCCCAGATATGGACAGGGGCCCTGTCTCT  50

seq1  CTAATGCTCATGA-TGT-CCTGGAGGTCGGGCAGCGGCA-GCAAG-CTCT  89
      || |||||||||| ||| |||||||||  |||||||||| ||||| ||||
seq2  CT-ATGCTCATGAGTGTCCCTGGAGGTTCGGCAGCGGCAGGCAAGCCTCT  99

seq1  GTA-GAAAAGACAATCAAGTATTGAGCTG-TCTTTGGGAACTGAGAACAG  137
      ||| |||||||||||| |||| ||||||| |||||||||   ||||||||
seq2  GTAGGAAAAGACAATC-AGTA-TGAGCTGTTCTTTGGGACTGGAGAACAG  147

seq1  C-AAAGATCCACCAAATAAAGAAAAGCCAATTG-CTAGCACAATACCTGT  185
      | ||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  CAAAAGATCCACCAAATAAAGAAAAGCCAATTGCCTAGCACAATAACTGT  197

seq1  -GAGCCACTGTGACTTTCCAGCTGCACAGAACTTCCTACGCGCTCAATTT  234
       ||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  GGAGCCACTGTGACTTTCCAGCTGCACAGAACTT-CTACGCGCTCAA-TT  245

seq1  GGCATAAAGCAAATTAGATTTATTTGTTTGTTTGTTTATTTATGCATTTA  284
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCAT-AAGCAAATTAGATTTATTTGTTGGTTTGTTTATTTATGCATTTA  294

seq1  TGCATTCGTGCATGTGCACAGAGGACAACTTGGGTGACGTTCGTTCCTCG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCGTGCATGTGCACAGAGGACAACTTGGGTGACGTTCGTTCCTCG  344

seq1  GGTGCACCTACCTTTTTTTTCTCTTTTGTAAGGGTCTCTTGGTGTCCAGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACCTACCTTTTTTTTCTCTTTTGTAAGGGTCTCTTGGTGTCCAGG  394

seq1  TTTTCCATGCCTACCTGCCTTTTCTTTTTTTTCTTTTTTCTTTTTTAAAC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGCCTACCTGCCTTTTCTTTTTTTTCTTTTTTCTTTTTTAAAC  444

seq1  ACACATCTGGGAGTCAAACTCGGGCCACAATTGCAAGGCAAGCACTTTTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGGGAGTCAAACTCGGGCCACAATTGCAAGGCAAGCACTTTTA  494

seq1  CTGACTAGGTTCTTCAACACCCAAAATATGCTTTGACTGTATAGGACTAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGGTTCTTCAACACCCAAAATATGCTTTGACTGTATAGGACTAT  544

seq1  GTGTGAGTTGTTGAGTGCAGACCAATGCTAGGTACTAGACACAGTCACAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTTGTTGAGTGCAGACCAATGCTAGGTACTAGACACAGTCACAT  594

seq1  GCCACACTGCTCTAGACACAACAAGAGAATAAACACCTTCCCATGATTCT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTGCTCTAGACACAACAAGAGAATAAACACCTTCCCATGATTCT  644

seq1  TGCTGAGAGTAGCTTCATGATTTCAAGCTACAATATGCATCATAAAACAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAGTAGCTTCATGATTTCAAGCTACAATATGCATCATAAAACAT  694

seq1  AATGAGAGTTTTCTATAATTGTCTATAGGTAAAGTCCCTATTAGAAGACA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGTTTTCTATAATTGTCTATAGGTAAAGTCCCTATTAGAAGACA  744

seq1  TGCCCCCCATGACAATACAGGACTTAGAAAATAGAATCAACCAAAATGCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCCATGACAATACAGGACTTAGAAAATAGAATCAACCAAAATGCT  794

seq1  TCCATTGAAACTACAGTAAGCATCTTTTTTCATGTTTATTTTTAATTTTT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGAAACTACAGTAAGCATCTTTTTTCATGTTTATTTTTAATTTTT  844

seq1  GTTTTTGTGTGTTTGGCAGCAAGAGGTGATGGGTACCAAATGTGTGCAGC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTGTGTTTGGCAGCAAGAGGTGATGGGTACCAAATGTGTGCAGC  894

seq1  AACTAGAGCTACAGGTAGTATAAGCTGCCTGATGGAATTGCTGGGAATTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGCTACAGGTAGTATAAGCTGCCTGATGGAATTGCTGGGAATTG  944

seq1  AACTCAGGTCCTCTGGAAGAGCAGTAACTACTTTTAACAGCTGAGCCATC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCCTCTGGAAGAGCAGTAACTACTTTTAACAGCTGAGCCATC  994

seq1  TCACCACCCCCTGCCTTTTTCCTCCCTTATAGCTGTAGAAATGGTTCACT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCCCCTGCCTTTTTCCTCCCTTATAGCTGTAGAAATGGTTCACT  1044

seq1  CTCTACCTCCTCCTGTAGTCATTTCTCTTTTGCTTTTCTCCATCAGAATT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTCCTCCTGTAGTCATTTCTCTTTTGCTTTTCTCCATCAGAATT  1094

seq1  AAAATGGCACAAATCAGGTCCCCCTTTTCACCTTCCTATCAGCATTATTG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCACAAATCAGGTCCCCCTTTTCACCTTCCTATCAGCATTATTG  1144

seq1  ACTGTTGCTTCTGGTCCCCAAATGCTCTGCAGGGCACTGATGATGCAGAA  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCTTCTGGTCCCCAAATGCTCTGCAGGGCACTGATGATGCAGAA  1194

seq1  TTC  1187
      |||
seq2  TTC  1197


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