BAC Information

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BAC

Clone NameB6Ng01-269F20
Chromosome8 (Build37)
Map Location 108,266,325 - 108,402,600
singlet/doubletdoublet
Overlap geneGfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2
Upstream geneLOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik
Downstream geneEdc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269F20.bB6Ng01-269F20.g
ACCGA071983GA071984
length1,1131,112
definitionB6Ng01-269F20.b B6Ng01-269F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,266,325 - 108,267,420)(108,401,499 - 108,402,600)
sequence
gaattccaggccagcctggtctacatagtgagactgtcaaaataaaatat
aaaataaaataaaataaaaaagctaggttgggggttgaggagattgctca
gtggttaaagctcctgacttgcaatctgaggacctggactagagttcaga
tccccagaatccacaaagctagacttcgtagcactacaatcccacaactc
cttacaggaggataggggacagagacaggagaatcctcagaagtttgtgg
catttgtcatagtgaacaacaagatatcctgctctcaagcaaggtggaag
acaagaaccaacactacaggttggcctttgacctccacaggcgacatggg
actcacatacacaaatatgcatgcacacacacatgcacatatgtgtggtt
aggcagcctaacctagtatgtgagttccagatcagtgagagatcctgtct
caaaaaataaggcaaaaggcactggagaaacgacccctgtcctacctaca
ctacatctagtgtctggtatctagtttaggaggaggagccactctgggga
gcacgtagctcactggtagaacatgtactcctccccaaaaagctccccac
ttcaaagcagcccaagcctccacacaattgcatatgttcaatataaaatc
ggtctgaaataggtaaatcaaaaatagcaaaatgttctgaaccttgagct
gcaattatacactacacaacactacatattcagtcatcatggataaaaac
ctaaacctgcctgatgttttgttcacagacagtgggtcggttttcatgtt
catcctactttcacctgtctgcaacatctgatagactgtcccaccctccc
ttggcacagtctttcttttctcagctcctagaacataaatgtctcctgat
tttctctggccactcctcagacccttgctagttccttcctgataaacaac
ataactaccacagctcaggcccagcccattgttctctcttctgtttatac
ttcacttggtggattctaccaagtcttcatgaactttaatacccatttct
attccctagtgactcaagttggtctggcttggatctctttcgctctaggg
tccagacccagta
gaattccagtacagaataggtatttgtgaacgtgaattactatgtgggaa
actgctggtcacataggtgtcaataaatggctactcacatgtatattgaa
aggcagcacactttaccacttagctaggcagcagagcagaggacttgcct
gtcttttagctcaatgtctcagggcagaagtgatcaaaaattttaaggaa
tcttgaaacactattatttattaatttatcccaatcagaagaaactactg
ataaatggtttacattttaaaactgagttcacattgggcccagtggcaca
tacctcctgtcagtgtgtatatgacaaggctatttaaaacaagcaaacca
gggctggagagatggctcagtggttaagagcactgactgctcttccagaa
gtcccgagttcaattctcagcaaccacgtggtggctcacaaccatctata
atgggatccgataccctgttctggtgtgtctgaagacagctacagtgtac
tcacacacattaaatgaataattaatcttaaaaacaaaaaacaaaaaaac
aaactagcaaataagcccggctcccccaaacaaataaatacaacacacac
aaatttcacaagaggatcagaattttataaggcattggaataggatgggg
aatgaccagcataacactgcaatagaaagaggcagaccccaaactctaac
tacaattcagaaaagcaggatgaggcctagtgtgtgcacgcatgctacgg
ctgggccactcacaccagtagggatctgaaactcggtgtgaagtgcctgg
cactccattactgcttattactccagcccaagagcggagggtgagctcct
ggaaatgccccgcaaccccgagggccgactttggttgcaggttctgggca
gagcgttctgaacggcagaggaactgatagaaagtaaaggtgtagtccag
agagctacggccctgcccaagaggtcaaggcaatctgtcctgctctgtga
agaggcatttgggcaagtgcctgactttaaggatgacagtgtaaaggagg
gggtaaagggagactaggcacagtgaactcacacttaaatggcttagatg
tcttctttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108266325_108267420
seq2: B6Ng01-269F20.b_47_1159

seq1  GAATTCCAGGCCAGCCTGGTCTACATAGTGAGACTGTCAAAATAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCTACATAGTGAGACTGTCAAAATAAAATAT  50

seq1  AAAATAAAATAAAATAAAAAAGCTAGGTTGGGGGTTGAGGAGATTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATAAAATAAAAAAGCTAGGTTGGGGGTTGAGGAGATTGCTCA  100

seq1  GTGGTTAAAGCTCCTGACTTGCAATCTGAGGACCTGGACTAGAGTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAAGCTCCTGACTTGCAATCTGAGGACCTGGACTAGAGTTCAGA  150

seq1  TCCCCAGAATCCACAAAGCTAGACTTCGTAGCACTACAATCCCACAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAATCCACAAAGCTAGACTTCGTAGCACTACAATCCCACAACTC  200

seq1  CTTACAGGAGGATAGGGGACAGAGACAGGAGAATCCTCAGAAGTTTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGAGGATAGGGGACAGAGACAGGAGAATCCTCAGAAGTTTGTGG  250

seq1  CATTTGTCATAGTGAACAACAAGATATCCTGCTCTCAAGCAAGGTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCATAGTGAACAACAAGATATCCTGCTCTCAAGCAAGGTGGAAG  300

seq1  ACAAGAACCAACACTACAGGTTGGCCTTTGACCTCCACAGGCGACATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACCAACACTACAGGTTGGCCTTTGACCTCCACAGGCGACATGGG  350

seq1  ACTCACATACACAAATATGCATGCACACACACATGCACATATGTGTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATACACAAATATGCATGCACACACACATGCACATATGTGTGGTT  400

seq1  AGGCAGCCTAACCTAGTATGTGAGTTCCAGATCAGTGAGAGATCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTAACCTAGTATGTGAGTTCCAGATCAGTGAGAGATCCTGTCT  450

seq1  CAAAAAATAAGGCAAAAGGCACTGGAGAAACGACCCCTGTCCTACCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATAAGGCAAAAGGCACTGGAGAAACGACCCCTGTCCTACCTACA  500

seq1  CTACATCTAGTGTCTGGTATCTAGTTTAGGAGGAGGAGCCACTCTGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTAGTGTCTGGTATCTAGTTTAGGAGGAGGAGCCACTCTGGGGA  550

seq1  GCACGTAGCTCACTGGTAGAACATGTACTCCTCCCCAAAAAGCTCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTAGCTCACTGGTAGAACATGTACTCCTCCCCAAAAAGCTCCCCAC  600

seq1  TTCAAAGCAGCCCAAGCCTCCACACAATTGCATATGTTCAATATAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAGCCCAAGCCTCCACACAATTGCATATGTTCAATATAAAATC  650

seq1  GGTCTGAAATAGGTAAATCAAAAATAGCAAAATGTTCTGAACCTTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAAATAGGTAAATCAAAAATAGCAAAATGTTCTGAACCTTGAGCT  700

seq1  GCAATTATACACTACACAACACTACATATTCAGTCATCATGGATAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATACACTACACAACACTACATATTCAGTCATCATGGATAAAAAC  750

seq1  CTAAACCTGCCTGATG-TTTGTTCACAGACAGTGGGTCGGTTTTCATGTT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAAACCTGCCTGATGTTTTGTTCACAGACAGTGGGTCGGTTTTCATGTT  800

seq1  CATCCTAC-TTCACCTGTCTGCAACATCTGATAGACTGTCCCACCCT-CC  847
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CATCCTACTTTCACCTGTCTGCAACATCTGATAGACTGTCCCACCCTCCC  850

seq1  TTGGCACAGTC-TTCTTTTCTCAGCTCCTAGAACATAAATGTCTCCTGA-  895
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TTGGCACAGTCTTTCTTTTCTCAGCTCCTAGAACATAAATGTCTCCTGAT  900

seq1  TTTCTCTGGCCACTCCTCAGACCCTTGCTAGTTCC-TCCTGATAACCAAC  944
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TTTCTCTGGCCACTCCTCAGACCCTTGCTAGTTCCTTCCTGATAAACAAC  950

seq1  ATAACTACCACAGCTCAGGCCCAGCCCAT--GTCTCTCTTCTG-TTATAC  991
      |||||||||||||||||||||||||||||   ||||||||||| ||||||
seq2  ATAACTACCACAGCTCAGGCCCAGCCCATTGTTCTCTCTTCTGTTTATAC  1000

seq1  -TCACTTGGT-GATTCTACCAAGTC-TCATGACTTTAAATACC--ATTCT  1036
       ||||||||| |||||||||||||| ||||||  || ||||||   ||||
seq2  TTCACTTGGTGGATTCTACCAAGTCTTCATGAACTTTAATACCCATTTCT  1050

seq1  ATTCCCTAGTGACTCCTAAAGTT-GTCTG--CTGGATC-CTTTCGCTC-A  1081
      |||||||||||||||   ||||| |||||   |||||| ||||||||| |
seq2  ATTCCCTAGTGACTC---AAGTTGGTCTGGCTTGGATCTCTTTCGCTCTA  1097

seq1  AGGTCCAGA-CCAGTA  1096
       |||||||| ||||||
seq2  GGGTCCAGACCCAGTA  1113

seq1: chr8_108401499_108402600
seq2: B6Ng01-269F20.g_69_1180 (reverse)

seq1  AGGGAAAGA--GCCTCT-AGCCATTTAAGGTGTGTG-TCACTGTGCCT-G  45
      |||||||||   | ||| |||||||||| ||||| | ||||||||||| |
seq2  AGGGAAAGAAGACATCTAAGCCATTTAA-GTGTGAGTTCACTGTGCCTAG  49

seq1  TCT-CCTTTA-CCCCTCCTTTAC-CTGTCATCCTTATAGTCAGGCACTTG  92
      ||| |||||| |||||||||||| |||||||||||| |||||||||||||
seq2  TCTCCCTTTACCCCCTCCTTTACACTGTCATCCTTAAAGTCAGGCACTTG  99

seq1  -CCAAAAGCCTCTTCACAGAGCAGGACAGATTGCC-TGACCTCTTGGCCA  140
       ||||| |||||||||||||||||||||||||||| ||||||||||| ||
seq2  CCCAAATGCCTCTTCACAGAGCAGGACAGATTGCCTTGACCTCTTGGGCA  149

seq1  -GGCCGTAGCTCTCTGGACTACACCTTACTTTTCTATCAGTTCCTCTTGC  189
       ||||||||||||||||||||||||||   |||||||||||||||| |||
seq2  GGGCCGTAGCTCTCTGGACTACACCTTTACTTTCTATCAGTTCCTC-TGC  198

seq1  CGTTTCAGAACGCTCTGCCCAGAACCTGCAACC-AAGTCGGCCCTCGGGG  238
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CG-TTCAGAACGCTCTGCCCAGAACCTGCAACCAAAGTCGGCCCTCGGGG  247

seq1  TTGCGGGGCATTTCCAGGAGCTCACCCTCCGCTCTTGGGCTGGAGTAATA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGGGCATTTCCAGGAGCTCACCCTCCGCTCTTGGGCTGGAGTAATA  297

seq1  AGCAGTAAT-GAGTGCCAGGCACTTCACACCGAGTTTCAGATCCCTACTG  337
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATGGAGTGCCAGGCACTTCACACCGAGTTTCAGATCCCTACTG  347

seq1  GTGTGAGTGGCCCAGCCGTAGCATGCGTGCACACACTAGGCCTCATCCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGGCCCAGCCGTAGCATGCGTGCACACACTAGGCCTCATCCTG  397

seq1  CTTTTCTGAATTGTAGTTAGAGTTTGGGGTCTGCCTCTTTCTATTGCAGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGAATTGTAGTTAGAGTTTGGGGTCTGCCTCTTTCTATTGCAGT  447

seq1  GTTATGCTGGTCATTCCCCATCCTATTCCAATGCCTTATAAAATTCTGAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTGGTCATTCCCCATCCTATTCCAATGCCTTATAAAATTCTGAT  497

seq1  CCTCTTGTGAAATTTGTGTGTGTTGTATTTATTTGTTTGGGGGAGCCGGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTGAAATTTGTGTGTGTTGTATTTATTTGTTTGGGGGAGCCGGG  547

seq1  CTTATTTGCTAGTTTGTTTTTTTGTTTTTTGTTTTTAAGATTAATTATTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGCTAGTTTGTTTTTTTGTTTTTTGTTTTTAAGATTAATTATTC  597

seq1  ATTTAATGTGTGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAACAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGTGTGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAACAG  647

seq1  GGTATCGGATCCCATTATAGATGGTTGTGAGCCACCACGTGGTTGCTGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCGGATCCCATTATAGATGGTTGTGAGCCACCACGTGGTTGCTGAG  697

seq1  AATTGAACTCGGGACTTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCGGGACTTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAG  747

seq1  CCATCTCTCCAGCCCTGGTTTGCTTGTTTTAAATAGCCTTGTCATATACA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGCCCTGGTTTGCTTGTTTTAAATAGCCTTGTCATATACA  797

seq1  CACTGACAGGAGGTATGTGCCACTGGGCCCAATGTGAACTCAGTTTTAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACAGGAGGTATGTGCCACTGGGCCCAATGTGAACTCAGTTTTAAA  847

seq1  ATGTAAACCATTTATCAGTAGTTTCTTCTGATTGGGATAAATTAATAAAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACCATTTATCAGTAGTTTCTTCTGATTGGGATAAATTAATAAAT  897

seq1  AATAGTGTTTCAAGATTCCTTAAAATTTTTGATCACTTCTGCCCTGAGAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTTCAAGATTCCTTAAAATTTTTGATCACTTCTGCCCTGAGAC  947

seq1  ATTGAGCTAAAAGACAGGCAAGTCCTCTGCTCTGCTGCCTAGCTAAGTGG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTAAAAGACAGGCAAGTCCTCTGCTCTGCTGCCTAGCTAAGTGG  997

seq1  TAAAGTGTGCTGCCTTTCAATATACATGTGAGTAGCCATTTATTGACACC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGCTGCCTTTCAATATACATGTGAGTAGCCATTTATTGACACC  1047

seq1  TATGTGACCAGCAGTTTCCCACATAGTAATTCACGTTCACAAATACCTAT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACCAGCAGTTTCCCACATAGTAATTCACGTTCACAAATACCTAT  1097

seq1  TCTGTACTGGAATTC  1102
      |||||||||||||||
seq2  TCTGTACTGGAATTC  1112