BAC Information

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BAC

Clone NameB6Ng01-269K20
Chromosome8 (Build37)
Map Location 29,481,065 - 29,482,192
singlet/doubletsinglet
Overlap genenone
Upstream geneChrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422, LOC666430
Downstream geneEG666446, LOC100042598, Unc5d, LOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269K20.bB6Ng01-269K20.g
ACCGA072207GA072208
length1,1261,167
definitionB6Ng01-269K20.b B6Ng01-269K20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaaagaagaaataaaaaatagctaaggaatctattaaaattc
aacatccttagcaattggagaattgcaaattgaaactactttaagatctc
atcttactccattcacagtggctaaggtcaatcaaaacaacccacaacaa
atgctggttggggaatgctcattcactgttagtgagattgcaagctcatg
tagcctctatggaaatcagtgtggagaattccccaaaagctcaaactagt
cctctatgacccagctatactgctccttggcatatgccccaaagattcaa
aggataatgaaaatgtgatacatatacactttggaatagtattcagctgt
aaggaaaaataaaatttgtgaaagtaaattttgcaaggtgtttgaagtca
tgataggcagaaattctaagtgatttcttttctttcaaataattagcgaa
ttttagtgccgttacgatgccatctgacatatgaaatttggtttctgccg
taactaggtcattagttaattttagagttagacccgggtatctataagaa
tgtgtgtgtgttgttggaacacttcgggagggagatgactccagtgttcc
tgatgtggctgcgacttagctacggcagtggtgagctctccaggagtaca
cttgagaaaaataagtccctgtggtaccagtgctctagggaacccaagca
gcccaaactgctacatttatcacgttcttagaggacattatttgctttta
ccttacactgtctggaccccagttgcttacttgcaaattgttagagcaga
atcaactaattattgtgaatgctttactcctttatactctttgcatattt
tattcctttaaacagaatgtttcatttgcagtgaagccctcagagtcatg
caggattgttgggtaaaatgatcccattgcacatcacttagatatatatt
ttagatgagagatctaccacaccacattctcatttatacttggtttactt
tacctaaacctgaaattgtcaagtatcctttctcctgtatccagcaaaga
cagaatccagagcaattgctgtataaatgagaaactgtcctcccttgcca
acgttctcaagccctgctgttctgca

gaattctttaggtaacaacataatcaggttctagattctagtatttttct
tgaattcatgaattttttttaaaaaatgctctttaacaacttcctgagaa
tattctgtctcttcaaggatagatattctaactggcagttatcatgtaga
agaatgcgaaatgatccattcctatctccttgtacttaggtcaaatctaa
gtggcttaaagaactccacataaaaccagagacagcaaaacttatagagg
agaaagtgggggaaagcctcgaagatatgggcacaggggaaaaattcctg
aatagaacagcaatggcttgtgctgtaagatcgagattcaataaatggga
ctttataaaatttcaaaatttctgtaaggcaaaagacaccgtcaataaga
caaaaaagccaccaacagattgggaaaggatctttacctatcctaaatca
gatagggaactaatatccaatatatataaagaactcaagaaggtggactc
cagaaaatcaaatgaccccgttaaaaaagggggctcagagctaaacaaag
aattatcacctgaggaatactgaatgactgagaagcacctgaaaaaaagt
tcagtatccttaatcatcagagaaatgcaaatcaaaacaaccctgagatt
ccatctcacagcagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcaaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatcccccaacacctctcctggggt
tatatccagaagatgtttcaaccagtaagaaggatacatgctccactatg
ttcatagcagcccttatttataatagccagaagctggaaagaacccagaa
tgcctcctcagcagagccatggatacagaaaatatgggtacattttacca
catggagtactacttcagctatttcaaagatgatttatgaaattccttag
gcaaatggaatgaactgaggcatcatcctgagtgaagtaccaatccaaag
aacctctcatgaattctactcactgatagtggatttaactccaaccttaa
ggaattaccccagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_29481065_29482192
seq2: B6Ng01-269K20.b_45_1170

seq1  GAATTCTCAAAAGAAGAAATAAAAAATAGCTAAGGAATCTATTAAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAGAAGAAATAAAAAATAGCTAAGGAATCTATTAAAATTC  50

seq1  AACATCCTTAGCAATTGGAGAATTGCAAATTGAAACTACTTTAAGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTAGCAATTGGAGAATTGCAAATTGAAACTACTTTAAGATCTC  100

seq1  ATCTTACTCCATTCACAGTGGCTAAGGTCAATCAAAACAACCCACAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTCCATTCACAGTGGCTAAGGTCAATCAAAACAACCCACAACAA  150

seq1  ATGCTGGTTGGGGAATGCTCATTCACTGTTAGTGAGATTGCAAGCTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTTGGGGAATGCTCATTCACTGTTAGTGAGATTGCAAGCTCATG  200

seq1  TAGCCTCTATGGAAATCAGTGTGGAGAATTCCCCAAAAGCTCAAACTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTATGGAAATCAGTGTGGAGAATTCCCCAAAAGCTCAAACTAGT  250

seq1  CCTCTATGACCCAGCTATACTGCTCCTTGGCATATGCCCCAAAGATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGACCCAGCTATACTGCTCCTTGGCATATGCCCCAAAGATTCAA  300

seq1  AGGATAATGAAAATGTGATACATATACACTTTGGAATAGTATTCAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATGAAAATGTGATACATATACACTTTGGAATAGTATTCAGCTGT  350

seq1  AAGGAAAAATAAAATTTGTGAAAGTAAATTTTGCAAGGTGTTTGAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAATAAAATTTGTGAAAGTAAATTTTGCAAGGTGTTTGAAGTCA  400

seq1  TGATAGGCAGAAATTCTAAGTGATTTCTTTTCTTTCAAATAATTAGCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCAGAAATTCTAAGTGATTTCTTTTCTTTCAAATAATTAGCGAA  450

seq1  TTTTAGTGCCGTTACGATGCCATCTGACATATGAAATTTGGTTTCTGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGCCGTTACGATGCCATCTGACATATGAAATTTGGTTTCTGCCG  500

seq1  TAACTAGGTCATTAGTTAATTTTAGAGTTAGACCCGGGTATCTATAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGGTCATTAGTTAATTTTAGAGTTAGACCCGGGTATCTATAAGAA  550

seq1  TGTGTGTGTGTTGTTGGAACACTTCGGGAGGGAGATGACTCCAGTGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTGTTGGAACACTTCGGGAGGGAGATGACTCCAGTGTTCC  600

seq1  TGATGTGGCTGCGACTTAGCTACGGCAGTGGTGAGCTCTCCAGGAGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGCTGCGACTTAGCTACGGCAGTGGTGAGCTCTCCAGGAGTACA  650

seq1  CTTGAGAAAAATAAGTCCCTGTGGTACCAGTGCTCTAGGGAACCCAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAAATAAGTCCCTGTGGTACCAGTGCTCTAGGGAACCCAAGCA  700

seq1  GCCCAAACTGCTACATTTATCACGTTCTTAGAGGACATTATTTGCTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAACTGCTACATTTATCACGTTCTTAGAGGACATTATTTGCTTTTA  750

seq1  CCTTACACTGTCTGGACCCCAGTTGCTTACTTGCAAATTGTTAGAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACACTGTCTGGACCCCAGTTGCTTACTTGCAAATTGTTAGAGCAGA  800

seq1  ATCAACTAATTATTGTGAATGCTTTACTCCTTTATACTCTTTGCATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAATTATTGTGAATGCTTTACTCCTTTATACTCTTTGCATATTT  850

seq1  TATTCCTTTAAACAGAATGTTTCATTTGCAGTGAAGCCCTCAGAGTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTAAACAGAATGTTTCATTTGCAGTGAAGCCCTCAGAGTCATG  900

seq1  CAGGATTGTTGGGTAAAATGATCCCATTGCACATCACTTAGATATATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGTTGGGTAAAATGATCCCATTGCACATCACTTAGATATATATT  950

seq1  TTAGATGAGAGATCTACCACACCACATTCTCATTTATAACTTGG-TTACT  999
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TTAGATGAGAGATCTACCACACCACATTCTCATTTAT-ACTTGGTTTACT  999

seq1  TTACCTAAACCTGAAATTGTCAAGTATCCTTTCTCCTGTATCCAGCAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAAACCTGAAATTGTCAAGTATCCTTTCTCCTGTATCCAGCAAAG  1049

seq1  ACAGATCCAAGAGCAATTTGCTGTAATAAATGAGAAACTGT-CTCCCCTG  1098
      |||||  | ||||||| ||||||| |||||||||||||||| ||||| ||
seq2  ACAGAATCCAGAGCAA-TTGCTGT-ATAAATGAGAAACTGTCCTCCCTTG  1097

seq1  CCAAACGTTCTCAAG-CCTGCTGTTCCTGCA  1128
      || |||||||||||| ||||||||| |||||
seq2  CC-AACGTTCTCAAGCCCTGCTGTT-CTGCA  1126


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