BAC Information

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BAC

Clone NameB6Ng01-269O05
Chromosome8 (Build37)
Map Location 102,435,207 - 102,606,964
singlet/doubletdoublet
Overlap geneLOC100042069, LOC436054
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269O05.bB6Ng01-269O05.g
ACCGA072369GA072370
length1,1161,182
definitionB6Ng01-269O05.b B6Ng01-269O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,435,207 - 102,436,339)(102,605,778 - 102,606,964)
sequence
gaattccacttgtcttgtaaatctcaggtatagaaaatataacttaacag
attatcaaagcataaaatgatgctttacattaaaaaaatgaaacaaaaac
aaaacaaatttaaaactgaaaagtttggcagtgttagtcaaaccaagcac
aagagactgagagttgcaagcgtacactccagatggttaatgaacaccaa
ataaatctactatactcaggcaaaatttaatcctttaaaaataactttac
tcagtacatttaaattttctttcacttccaatcagaacaaaatgtctttt
tcatattttctccagttatttatatcttaccatttttcttagataataat
acaaagtttatgcaaataaactagtgagcaaaagaccatttgataagctt
ataatagagatattttatgaaaaatattatttatacaactcagagtttat
gaataatctttaagtagagatgactaacagaatatttttgtgcgtcaaag
tggtaactaaactcacttgtttctttgtaagaatcttgaaagacaacagc
taaatgtgtgttttttcaaacgcattttttaagggttggtgatttcacac
aatgatcctttgatacataagagcaggtggggattctttattagcacttt
actaagtgtttagcttataaaaggcagcaatatagattctttgtttggtt
aggaatttttttataatacatcccttctcttgacaaggcgtccctgcagg
aaatagaaaaaggataacaaagcagggatacaaggagattatgctagcaa
gtctcagctaatattccccagtctcgttccgtggtcactaggttaagagg
tagggattgctaagaggcttacagttgccctcagctacctaagcggaatt
cccttgctaaagaacggagggacatccaggtatgatgaaattggagagac
tgacttggaacccgagatgaccctgatgtgtttctcgcatgttatttcac
ccgagagagcagaatacaaggtagatgtgtcatcagctcttacagtagtc
tgagcctcaaggcatggagttagaaatcgaaccaatataaaggcatgtga
tcgtattcctgaatgt

gaattctcatttttcataagtttacacattgatatagaaaatgctttggg
ctcatcaattgtgttacaatggcaagctttttggtggctttcaccccatg
agatgcacacctgtttgtcattttgagataataaaaattagactccatgt
gaagcacaccatgagaattaaactctgtcatataggaagaaattattagg
aaaggtgtgtcatgaatttaacaccttctcttgagtagaccttttggagc
tgcttctatactcactgtctcacccacttgagcaccatgagcctagagaa
caaaggctgggaatgcagtatgtcagcactatgtacagagctatttttac
cagtggaggagccccccccctgcagagtaattcatagggggtcagtccaa
actctccaggggtgttcttaaccctgaagagcacaaagggtatgagagct
atccaatcattagcgccagtctctgctgtcaatttggtaagggtctcttt
aatagttatatttatcctctctacctgtcctgaactttggggcctgtatg
cacaatataacttctaatcaatctccaatatcttggccagtccctgactt
acctgggcaacaaaggcaggggtcccagagcattcttggaataaaatctt
cttgcagtttgcatcaaaaaaaaaaaaaaagtatttcaacaccatataat
taaattttactcttggtaaggagacaacaataggacttggacatccataa
aacaactcaaaaaaatctaaatttagataccaggtaataagtaaaaatta
cattactgctaattcatgtgagtactaaggatacattttcagtaaaatat
aaatatttaggcatctatttagaactgccattcttctgaagaatgggata
gatgaattctatcactgataaagtgtgaaaaccattagagggaatatagt
ttctattggtattttagtcactagaaaggtacattccaaatgaacatgct
tatgaatatctagcagtgtgtggaaaatctgattgggttcgttctggaaa
catcctataattatggacttgcacagtacctagtggaagaaataggttag
ttgttgatcaccatccaccaatttagtggagatgagacctactctcctct
aagaataaatctataacatgtgaaaacaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102435207_102436339
seq2: B6Ng01-269O05.b_45_1160

seq1  GAATTCCACTTGTCTTGTAAATCTCAGGTATAGAAAATATAACTTAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGTCTTGTAAATCTCAGGTATAGAAAATATAACTTAACAG  50

seq1  ATTATCAAAGCATAAAATGATGCTTTACATTAAAAAAATGAAACAAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAAGCATAAAATGATGCTTTACATTAAAAAAATGAAACAAAAAC  100

seq1  AAAACAAATTTAAAACTGAAAAGTTTGGCAGTGTTAGTCAAACCAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATTTAAAACTGAAAAGTTTGGCAGTGTTAGTCAAACCAAGCAC  150

seq1  AAGAGACTGAGAGTTGCAAGCGTACACTCCAGATGGTTAATGAACACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTGAGAGTTGCAAGCGTACACTCCAGATGGTTAATGAACACCAA  200

seq1  ATAAATCTACTATACTCAGGCAAAATTTAATCCTTTAAAAATAACTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTACTATACTCAGGCAAAATTTAATCCTTTAAAAATAACTTTAC  250

seq1  TCAGTACATTTAAATTTTCTTTCACTTCCAATCAGAACAAAATGTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACATTTAAATTTTCTTTCACTTCCAATCAGAACAAAATGTCTTTT  300

seq1  TCATATTTTCTCCAGTTATTTATATCTTACCATTTTTCTTAGATAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTCTCCAGTTATTTATATCTTACCATTTTTCTTAGATAATAAT  350

seq1  ACAAAGTTTATGCAAATAAACTAGTGAGCAAAAGACCATTTGATAAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTATGCAAATAAACTAGTGAGCAAAAGACCATTTGATAAGCTT  400

seq1  ATAATAGAGATATTTTATGAAAAATATTATTTATACAACTCAGAGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAGATATTTTATGAAAAATATTATTTATACAACTCAGAGTTTAT  450

seq1  GAATAATCTTTAAGTAGAGATGACTAACAGAATATTTTTGTGCGTCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCTTTAAGTAGAGATGACTAACAGAATATTTTTGTGCGTCAAAG  500

seq1  TGGTAACTAAACTCACTTGTTTCTTTGTAAGAATCTTGAAAGACAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTAAACTCACTTGTTTCTTTGTAAGAATCTTGAAAGACAACAGC  550

seq1  TAAATGTGTGTTTTTTCAAACGCATTTTTTAAGGGTTGGTGATTTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGTGTTTTTTCAAACGCATTTTTTAAGGGTTGGTGATTTCACAC  600

seq1  AATGATCCTTTGATACATAAGAGCAGGTGGGGATTCTTTATTAGCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCTTTGATACATAAGAGCAGGTGGGGATTCTTTATTAGCACTTT  650

seq1  ACTAAGTGTTTAGCTTATAAAAGGCAGCAATATAGATTCTTTGTTTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGTTTAGCTTATAAAAGGCAGCAATATAGATTCTTTGTTTGGTT  700

seq1  AGGAATTTTTTTATAATACATCCCTTCTCTTGACAAGGCGTCCCTGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTTTTATAATACATCCCTTCTCTTGACAAGGCGTCCCTGCAGG  750

seq1  AAATAGAAAAAGGATAACAAAGCAGGGATACAAGGAGATTATGCTAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAAGGATAACAAAGCAGGGATACAAGGAGATTATGCTAGCAA  800

seq1  GTCTCAGCTAATATTCCCCAGTCTCGTTCCGTGGTCACTAGGTTAAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCTAATATTCCCCAGTCTCGTTCCGTGGTCACTAGGTTAAGAGG  850

seq1  TAGGGATTGCTAAGAGGCTTACAGTTGCCCTCAGCTACCTAAGCGGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTGCTAAGAGGCTTACAGTTGCCCTCAGCTACCTAAGCGGAATT  900

seq1  CCCTTGCTAAAGAACGGAGGGGACATCCAGGTATGATGAAATTGGAAGAG  950
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CCCTTGCTAAAGAACGGA-GGGACATCCAGGTATGATGAAATTGG-AGAG  948

seq1  AACTGAACTTGGAACCCGAAGATGACCCTGATGTGTTTCTCGCATGTTAT  1000
       |||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  -ACTG-ACTTGGAACCCG-AGATGACCCTGATGTGTTTCTCGCATGTTAT  995

seq1  TTCACCCCGAAGAAGAGCAGAATACAAGGGTAGAATGTGTCATTCAGCTC  1050
      |||| |||||   |||||||||||||| ||||| |||||||| |||||||
seq2  TTCA-CCCGA--GAGAGCAGAATACAA-GGTAG-ATGTGTCA-TCAGCTC  1039

seq1  -TACAGGGTAGTCTGAG-CTCAAGGCAATTGAGTAGAAAATCAGACACAT  1098
       ||||  |||||||||| |||||||| || ||||   |||||  ||  ||
seq2  TTACA--GTAGTCTGAGCCTCAAGGC-ATGGAGTTAGAAATCGAACCAAT  1086

seq1  AT-AAGGCATGTGAATCGTAAATTTCCCCTGAATGT  1133
      || |||||||||| ||||||   ||  |||||||||
seq2  ATAAAGGCATGTG-ATCGTA---TT--CCTGAATGT  1116


seq1: chr8_102605778_102606964
seq2: B6Ng01-269O05.g_68_1249 (reverse)

seq1  AAATTGTTT---CATGTTAT-GATTTTATCTTAGGAGGAGAGTAGTTTTT  46
      |||||||||   |||||||| |||||  ||||| ||||||||||| |   
seq2  AAATTGTTTTCACATGTTATAGATTTATTCTTA-GAGGAGAGTAGGT---  46

seq1  CTATTCTTTTCCATTAAATGTGTGATTTGTGTATCAAC-ACTA--CTA-T  92
          || | |||| |||||  |||  | ||| |||||| ||||  ||| |
seq2  ---CTCATCTCCACTAAATTGGTGGATGGTG-ATCAACAACTAACCTATT  92

seq1  TCCTCACCTAGGTACTTGTTGCAAGTCCATAATTATAGGATGTTTCCCAG  142
      || ||  |||||||||   |||||||||||||||||||||||||| ||||
seq2  TCTTCCACTAGGTACT--GTGCAAGTCCATAATTATAGGATGTTT-CCAG  139

seq1  ACCGAA-CCAATCAGATTTTTCCACAACACTGCTAGATATTCATAAGCAT  191
      | |||| ||||||||| |||||||| ||||||||||||||||||||||||
seq2  AACGAACCCAATCAGA-TTTTCCAC-ACACTGCTAGATATTCATAAGCAT  187

seq1  GTTCATTTGGAATGTACCTTTCTAGTTGACTAAAATACCAATAGAAACTA  241
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTCATTTGGAATGTACCTTTCTAG-TGACTAAAATACCAATAGAAACTA  236

seq1  TATT-CCTCTAATGGTTTTTCACACTTTATCAGTGATAGAATTCATCTAT  290
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTCCCTCTAATGG-TTTTCACACTTTATCAGTGATAGAATTCATCTAT  285

seq1  CCCATTCTTCAGAAGAATGGCAGTTCTAAATAGATGCCTAAATATTTATA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTTCAGAAGAATGGCAGTTCTAAATAGATGCCTAAATATTTATA  335

seq1  TTTTACTGAAAATGTATCCTTAGTACTCACATGAATTAGCAGTAATGTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGAAAATGTATCCTTAGTACTCACATGAATTAGCAGTAATGTAA  385

seq1  TTTTTACTTATTACCTGGTATCTAAATTTAGATTTTTTTGAGTTGTTTTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTATTACCTGGTATCTAAATTTAGATTTTTTTGAGTTGTTTTA  435

seq1  TGGATGTCCAAGTCCTATTGTTGTCTCCTTACCAAGAGTAAAATTTAATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCCAAGTCCTATTGTTGTCTCCTTACCAAGAGTAAAATTTAATT  485

seq1  ATATGGTGTTGAAATACTTTTTTTTTTTTTTTGATGCAAACTGCAAGAAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGTTGAAATACTTTTTTTTTTTTTTTGATGCAAACTGCAAGAAG  535

seq1  ATTTTATTCCAAGAATGCTCTGGGACCCCTGCCTTTGTTGCCCAGGTAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCCAAGAATGCTCTGGGACCCCTGCCTTTGTTGCCCAGGTAAG  585

seq1  TCAGGGACTGGCCAAGATATTGGAGATTGATTAGAAGTTATATTGTGCAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTGGCCAAGATATTGGAGATTGATTAGAAGTTATATTGTGCAT  635

seq1  ACAGGCCCCAAAGTTCAGGACAGGTAGAGAGGATAAATATAACTATTAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCCCAAAGTTCAGGACAGGTAGAGAGGATAAATATAACTATTAAA  685

seq1  GAGACCCTTACCAAATTGACAGCAGAGACTGGCGCTAATGATTGGATAGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTTACCAAATTGACAGCAGAGACTGGCGCTAATGATTGGATAGC  735

seq1  TCTCATACCCTTTGTGCTCTTCAGGGTTAAGAACACCCCTGGAGAGTTTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACCCTTTGTGCTCTTCAGGGTTAAGAACACCCCTGGAGAGTTTG  785

seq1  GACTGACCCCCTATGAATTACTCTGCAGGGGGGGGGCTCCTCCACTGGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACCCCCTATGAATTACTCTGCAGGGGGGGGGCTCCTCCACTGGTA  835

seq1  AAAATAGCTCTGTACATAGTGCTGACATACTGCATTCCCAGCCTTTGTTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTCTGTACATAGTGCTGACATACTGCATTCCCAGCCTTTGTTC  885

seq1  TCTAGGCTCATGGTGCTCAAGTGGGTGAGACAGTGAGTATAGAAGCAGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTCATGGTGCTCAAGTGGGTGAGACAGTGAGTATAGAAGCAGCT  935

seq1  CCAAAAGGTCTACTCAAGAGAAGGTGTTAAATTCATGACACACCTTTCCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGTCTACTCAAGAGAAGGTGTTAAATTCATGACACACCTTTCCT  985

seq1  AATAATTTCTTCCTATATGACAGAGTTTAATTCTCATGGTGTGCTTCACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCTTCCTATATGACAGAGTTTAATTCTCATGGTGTGCTTCACA  1035

seq1  TGGAGTCTAATTTTTATTATCTCAAAATGACAAACAGGTGTGCATCTCAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTAATTTTTATTATCTCAAAATGACAAACAGGTGTGCATCTCAT  1085

seq1  GGGGTGAAAGCCACCAAAAAGCTTGCCATTGTAACACAATTGATGAGCCC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAAGCCACCAAAAAGCTTGCCATTGTAACACAATTGATGAGCCC  1135

seq1  AAAGCATTTTCTATATCAATGTGTAAACTTATGAAAAATGAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTTCTATATCAATGTGTAAACTTATGAAAAATGAGAATTC  1182


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