BAC Information

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BAC

Clone NameB6Ng01-270L13
Chromosome8 (Build37)
Map Location 95,064,535 - 95,206,369
singlet/doubletdoublet
Overlap geneIrx6
Upstream geneAJ237917, LOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
Downstream geneLOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270L13.bB6Ng01-270L13.g
ACCGA072988GA072989
length9111,109
definitionB6Ng01-270L13.b B6Ng01-270L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,205,462 - 95,206,369)(95,064,535 - 95,065,640)
sequence
gaattctccggccttcggcttgggcttgaactctctggaagtaggaggaa
taaattctttctgtttaccaatcccccgccccagagtgttctgtcattac
attcaaatagactaacacacaagacactgaacctggcacaggataaaggc
ttcagatgtttggtgaccgcttacaaggtggcataacttcaagctataca
aatgctgagtcacctactgtgctcacggcttatataatgatatcgggctc
gcgagggaacaaatacacggaaaagatcctgacgtcatattcaacttcca
ccatcctctcccctagcccctggcgccacctaggaaaaacggatgagcat
tttggccacccctggactttggaggtctaatatcacgtcgtggtcgacgt
tgtcccctgatggacccctctcctgaagaactttggatgacccccggctg
tcggaggataccctcgtgctccagtggccccgcccccgccattaccttta
atcaaaagtgtattcaaaatatgattctgggggattatagtgcagatttg
cgggaggcgctcagcgtaggcagaggtagtggcaacatattgtgtgtggg
agcctgaggatgggataatcgcgggctcagacgtgccattctcctgcctc
tggggtcaccattagctttggaggagaccttgagcatctccatggaggac
tagcgaacctcatcccagccccgcccttttcccagcatccactgtagaga
gatggagataaacacctgctctgaccgtggtatcagcatgctctctctcc
tgcgcgagctgggcatcccatgatgactcgagtgagaaagagcccctcag
tcatcctctatcggtcaagatccaacacgaagtcttcaacagcctcccct
gcgctctccta
gaattcttactttctgtgataggctgcatgacaaggctgaccacgtttaa
ttgggaacttgaaggtaatgatggcaaacaatagtgaagccaatataaaa
ctcagagcagagctgggaaacggctcttcacacccatgggactgtgcacc
tgcacagtgcctgctctccacacccacaggactgtgcagcttcagggtgc
ctgctcttcacacccaggggactgtgcacctgcaaggtggctgtctccac
actcagggaggctgtgcacagtgcttgataactacacctgcagagagctt
gcttactgtacccaggggcagctgtgtacctgcaaggcccagacaggctc
cagaagaaaggctctaaagcttcctgtagaatccaaatgaataccctatc
ttaagtccccaggagatgaaaccagatagaacaggatcatgatgtctctg
ggaaaggactggacttcttgagtggttctgcacaaagtgccccatgacta
gtatttaaagtggtagtgcctgaagaaaaagaatggggatattttacatg
gctgtcattcattaaagctcactatgtgagctatgggaatatagtcctgt
ggcctactcaagtgccataagctaggtttatggccatccctttaggtagg
gtgggctgatttgctccctgctatacccagaatcacctcttatacttacc
atccttccttttacatcctttcacaaaagatccactcattcacattgaga
tgaaaacaaagttgaagagaacacttatctagtgcagtgtactatggccc
ttctgcagaagctcactatccaggggaagatacatgtgtttggcatgcag
tcatatgaaaaatctaaaattgtagctctaaaaatgtataatagtgtgca
ctgcctggggagaacccatgatctatatgaatggatctgtcttagttagg
gtttcattgttgtgacgaaataccatgatcagactactcttattgagaaa
acatctatagaagctaggacttacaaggcttcagacgtgcagttcatgat
catcagcatgcaagcatgacagctgcatgcgattatatgctgaatgagaa
ggagcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_95205462_95206369
seq2: B6Ng01-270L13.b_42_952 (reverse)

seq1  TAGGAGGCTGCAGGGGAGGCTGCT-AATACTTCTTGTTGGATCTAGACCG  49
      ||||||   ||||||||||||| | || ||||| |||||||||| |||||
seq2  TAGGAGAGCGCAGGGGAGGCTGTTGAAGACTTCGTGTTGGATCTTGACCG  50

seq1  TTAGAGGAGGGTGGAGGGGCCTTTTCTCAC-CGAGTCATCATTAGGAAGC  98
       ||||||| |   |||||||  |||||||| |||||||||| | ||| ||
seq2  ATAGAGGATGACTGAGGGGCTCTTTCTCACTCGAGTCATCA-TGGGATGC  99

seq1  CCAAACTGCGCATAAGAGAGAGCCTGCTAACTCCAAGGTCAGAACAGGTC  148
      |||    |||||  ||||||||| |||| |  ||| ||||||| ||||| 
seq2  CCAGCTCGCGCAGGAGAGAGAGCATGCTGATACCACGGTCAGAGCAGGTG  149

seq1  TTTATCTCCATCTCGGTACAGTGGATGCTGGGAAAAGGGCCGGGCTGGGA  198
      ||||||||||||||  |||||||||||||||||||||||| |||||||||
seq2  TTTATCTCCATCTCTCTACAGTGGATGCTGGGAAAAGGGCGGGGCTGGGA  199

seq1  TGAGGTTCGTTAGGCCTCC-TTCTGATGCTCAAGGTCTCCTCCAAAGCTA  247
      ||||||||| ||| ||||| |   ||||||||||||||||||||||||||
seq2  TGAGGTTCGCTAGTCCTCCATGGAGATGCTCAAGGTCTCCTCCAAAGCTA  249

seq1  ATGGTGACCCCA-AGGCCTGAGAATGGCACGTCTGAGCCCGCGATTATCC  296
      |||||||||||| ||||  |||||||||||||||||||||||||||||||
seq2  ATGGTGACCCCAGAGGCAGGAGAATGGCACGTCTGAGCCCGCGATTATCC  299

seq1  CATCCTCAGGCTCCCAGCCACAATCTGTTCCCACTACCTCTGCCTACGCT  346
      ||||||||||||||||  |||||| |||| ||||||||||||||||||||
seq2  CATCCTCAGGCTCCCACACACAATATGTTGCCACTACCTCTGCCTACGCT  349

seq1  GAGCGCCTCCCGCAAATCTGCACTATAATCCCCCAGAATCATATTTTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCTCCCGCAAATCTGCACTATAATCCCCCAGAATCATATTTTGAA  399

seq1  TACACTTTTGATTAAATGTAATGGCGGGGGCGGGGCCACTGGAGCCTGTT  446
      |||||||||||||||| ||||||||||||||||||||||||||||  |  
seq2  TACACTTTTGATTAAAGGTAATGGCGGGGGCGGGGCCACTGGAGCACGAG  449

seq1  GGTATCCTCCGACAGCTGGCTGTCATCCAAAGTTCTTCAGGAGAGGTGTC  496
      |||||||||||||||| ||  ||||||||||||||||||||||||| |||
seq2  GGTATCCTCCGACAGCCGGGGGTCATCCAAAGTTCTTCAGGAGAGGGGTC  499

seq1  CATCCGACGACAACGACGACCACGACGTGATCTTAGACCTCCAAAGTCCA  546
      |||| |  ||||||| ||||||||||||||| ||||||||||||||||||
seq2  CATCAGGGGACAACGTCGACCACGACGTGATATTAGACCTCCAAAGTCCA  549

seq1  TGGGTGGCCAAAATGCTCCTCCGTTTTTCCTAGGTGGCGCCAGGGGCTAG  596
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGGTGGCCAAAATGCTCATCCGTTTTTCCTAGGTGGCGCCAGGGGCTAG  599

seq1  GGGAGAGGATGGTGGAAGTTGAATATGACGTCAGGATCTCTTCCGTGTAT  646
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGAGAGGATGGTGGAAGTTGAATATGACGTCAGGATCTTTTCCGTGTAT  649

seq1  TTGTTCCCTCGTGAGCCCGATATCATTATATAAGCCGTGAGCACACTAGG  696
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  TTGTTCCCTCGCGAGCCCGATATCATTATATAAGCCGTGAGCACAGTAGG  699

seq1  TGACTCTGTATTTGTATAGCCTGAAGTTATGCCACCTTGTAAGCGGTCAC  746
      |||||| | ||||||||||| |||||||||||||||||||||||||||||
seq2  TGACTCAGCATTTGTATAGCTTGAAGTTATGCCACCTTGTAAGCGGTCAC  749

seq1  CAAACATCTGAAGCCTTTATCCTGTGCCAGGTTCAGTGTCTTGTGTCTTA  796
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAACATCTGAAGCCTTTATCCTGTGCCAGGTTCAGTGTCTTGTGTGTTA  799

seq1  GTCTATTTGAATGCTATGACAGAACACTCTGGGCTGGGGGACTGGTAAAC  846
      |||||||||||||  ||||||||||||||||||  |||||| ||||||||
seq2  GTCTATTTGAATGTAATGACAGAACACTCTGGGGCGGGGGATTGGTAAAC  849

seq1  AGAATGAATTTATTCCTCCTACTTCCAGAGAGTTCAAGCCCAAGCCGAAG  896
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATTTATTCCTCCTACTTCCAGAGAGTTCAAGCCCAAGCCGAAG  899

seq1  GCCGGAGAATTC  908
      ||||||||||||
seq2  GCCGGAGAATTC  911

seq1: chr8_95064535_95065640
seq2: B6Ng01-270L13.g_64_1172

seq1  GAATTCTTACTTTAGGTGATAGGCTGCATGACAAGTCTGACCACGTTTAA  50
      |||||||||||||  |||||||||||||||||||| ||||||||||||||
seq2  GAATTCTTACTTTCTGTGATAGGCTGCATGACAAGGCTGACCACGTTTAA  50

seq1  GTGGGAACATGAAGGTAATGATGGCAAACAAGAGTGAAGCCAAGAGAAAA  100
       ||||||| |||||||||||||||||||||| ||||||||||| | ||||
seq2  TTGGGAACTTGAAGGTAATGATGGCAAACAATAGTGAAGCCAATATAAAA  100

seq1  CTCAGAGCAGAGCTGGGAAACGGCTCTTCACACCCAGGGGACTGTGCACC  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCAGAGCAGAGCTGGGAAACGGCTCTTCACACCCATGGGACTGTGCACC  150

seq1  TGCACAGTGCCTGCTCTCCACACCCACAGGACTGTGCAGCTTCAGGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGCCTGCTCTCCACACCCACAGGACTGTGCAGCTTCAGGGTGC  200

seq1  CTGCTCTTCACACCCAGGGGACTGTGCACCTGCAGGGTGGCTGTCTCCAC  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGCTCTTCACACCCAGGGGACTGTGCACCTGCAAGGTGGCTGTCTCCAC  250

seq1  ACTCAGGGAGGCTGTGCACAGTGCTTGATAACTACACCTGCAGAGAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGAGGCTGTGCACAGTGCTTGATAACTACACCTGCAGAGAGCTT  300

seq1  GCTTACTGTACCCAGGGGCAGCTGTGTACCTGCAAGGCCCAGACAGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGTACCCAGGGGCAGCTGTGTACCTGCAAGGCCCAGACAGGCTC  350

seq1  CAGAAGAAAGGCTCTAAAGCTTCCTGTAGAATCCAAATGAATACCCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAGGCTCTAAAGCTTCCTGTAGAATCCAAATGAATACCCTATC  400

seq1  TTAAGTCCCCAGGAGATGAAACCAGATAGAACAGGATCATGATGTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCCCAGGAGATGAAACCAGATAGAACAGGATCATGATGTCTCTG  450

seq1  GGAAAGGACTGGACTTCTTGAGTGGTTCTGCACAAAGTGCCCCATGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGACTGGACTTCTTGAGTGGTTCTGCACAAAGTGCCCCATGACTA  500

seq1  GTATTTAAAGTGGTAGTGCCTGAAGAAAAAGAATGGGGATATTTTAGATG  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTATTTAAAGTGGTAGTGCCTGAAGAAAAAGAATGGGGATATTTTACATG  550

seq1  GCTGTCATTCAGTAAAGCTCACTAGGTGAGCTATGGGAATATAGTCCTGT  600
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GCTGTCATTCATTAAAGCTCACTATGTGAGCTATGGGAATATAGTCCTGT  600

seq1  GGCCTACTCAAGTGCCATAAGCTAGGTTTATGGCCATCCCTTTAGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACTCAAGTGCCATAAGCTAGGTTTATGGCCATCCCTTTAGGTAGG  650

seq1  GTGGGCTGATTTGCTCCCTGCTATACCCAGAATCACCTCTTATACTTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGATTTGCTCCCTGCTATACCCAGAATCACCTCTTATACTTACC  700

seq1  ATCCTTCCTTTTACATCCTTTCACAAAAGATCCACTCATTCACATTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCTTTTACATCCTTTCACAAAAGATCCACTCATTCACATTGAGA  750

seq1  TGAAAACAAAGTTGAAGAGAACACTTAGCCAAGTGCAGTGTACTATGGCC  800
      |||||||||||||||||||||||||||  | |||||||||||||||||||
seq2  TGAAAACAAAGTTGAAGAGAACACTTA-TCTAGTGCAGTGTACTATGGCC  799

seq1  CTTCTGCAGAAGCTCACTATCCAGGGGAAGATACATGTATTTGGCAGGCA  850
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CTTCTGCAGAAGCTCACTATCCAGGGGAAGATACATGTGTTTGGCATGCA  849

seq1  GTCATATGAAAAAATCT-AAATTGTAGCTCTAAAAATGTATAATAGTGTG  899
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GTCATATG-AAAAATCTAAAATTGTAGCTCTAAAAATGTATAATAGTGTG  898

seq1  CACTGCCTGGGGAGAACCCATGATCCAAATGAA-GGGTCTGTCTTAGTTA  948
      ||||||||||||||||||||||||| | ||||| || |||||||||||||
seq2  CACTGCCTGGGGAGAACCCATGATCTATATGAATGGATCTGTCTTAGTTA  948

seq1  GGGTTTCATTGTTGTGAAGAAATACCATGACCAAGACAACTCTTATGAAG  998
      ||||||||||||||||| |||||||||||| | |||| ||||||||  ||
seq2  GGGTTTCATTGTTGTGACGAAATACCATGATC-AGACTACTCTTATTGAG  997

seq1  AAAACATTTATAGGAGCT--GGCTTACA--GGTTCAGAGGTTCAGTTCAT  1044
      ||||||| ||||| ||||  | ||||||  | |||||| || ||||||||
seq2  AAAACATCTATAGAAGCTAGGACTTACAAGGCTTCAGACGTGCAGTTCAT  1047

seq1  TATCATCAAGGCA-GGAAGCATGACAACCTGCA-GCCA-TATATGGTGAT  1091
       |||||||  ||| | ||||||||| | ||||| || | |||||| ||| 
seq2  GATCATCA--GCATGCAAGCATGAC-AGCTGCATGCGATTATATGCTGAA  1094

seq1  GGAGAAGGAGCTTAA  1106
       ||||||||||||||
seq2  TGAGAAGGAGCTTAA  1109