BAC Information

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BAC

Clone NameB6Ng01-270P11
Chromosome8 (Build37)
Map Location 78,269,726 - 78,323,363
singlet/doubletdoublet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270P11.bB6Ng01-270P11.g
ACCGA073171GA073172
length1,151224
definitionB6Ng01-270P11.b B6Ng01-270P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,322,219 - 78,323,363)(78,269,726 - 78,269,949)
sequence
gaattcttgcttacaatcaggtactttgagatatcttctttaagaatctg
tgaaaatattctctccagtgatgaataagtaagccaattggtattataaa
ccagatctgccatctagactataactatcctgaagaaagcatttttaaat
cgtcttggtctccttagtgtctaaaacattataaatattcggtgtttgat
gaataaaatcaacttacatgattacagaagagcataatcaggaaggtgag
gtactgtaatcataaatgacagaagatattgcagttatgtagattaatag
aaaagaaagttcctggtgtaatgaacaacagctataatttacctgttcat
ggctccatatactttttattttattcattttagttttgaacacatatata
tgtggcatatatgcaagtgtatgcatgatcacttttatgcaaacacatgt
gtatatatgggtgcaaacatgaagaatgagcacatgcatttggagaccaa
agttaacaatagatgtccccctctatcactctccattttggttatgaaga
aaggaccccttaactgaaatcagagatttcaaattccaaatactcgatct
agacagctaacttgtcctggggatttccaattccatgtgctggaataaca
agccattggtagacctgcctagcttttgcatgttttctgtgtatccaaaa
tccattcctcacatttaattcaaatgctttttatctctgagtcatctctc
caaccctgctttagattctttctgaataagctatacaatattgaaaaaaa
taaattaaaatgcagagaaatctgaccaataaataaaaggtccaccaata
taaaaacaaaaactttagtgaataatataaaaataatgtaaatcacattt
aagaaaggaaataaaaagcaattccaaattcctcctgctacaaaacctca
gaatcattagtaaggagaaaacttaggagaaggctaacacttgttagctt
tgggagaggaggtactagagccaaaggcaacagtgctaatatggagcacc
tccacctaggagactgttttgtcactatgacatcaatagctcaggggaga
ctgcacatggagaaatataggcaccacaagtgacttggatgtcagcagta
c
aatacctgtaagagatacagtgagtttcaggcaagtttgaggaacttaat
aagaccatgtctcaaaagaaaaaaaaaataaaacaagaaaacaatctccc
caaactaaaacaaaacaaaacaaaaacctgggaatataactcaatggtag
atttctatgaggccctggcctcaatccttactactgaagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78322219_78323363
seq2: B6Ng01-270P11.b_46_1196 (reverse)

seq1  GTACTGCTGACATTCCAGTCACTTGTTGGTGCCTATATCT---CATGTGC  47
      ||||||||||||| | ||||||||| |||||||||||| |   |||||||
seq2  GTACTGCTGACATCCAAGTCACTTG-TGGTGCCTATATTTCTCCATGTGC  49

seq1  AGTCT-CCCTGAGCTATGGATGTCATAGTGAC-AAACAGTCTTCTAGGT-  94
      ||||| ||||||||||| |||||||||||||| ||||||||| |||||| 
seq2  AGTCTCCCCTGAGCTATTGATGTCATAGTGACAAAACAGTCTCCTAGGTG  99

seq1  GAGGTGCTCCATATTAGCACTGTTGCCTTTGGCTCTAGTACTTCTTCT-C  143
      ||||||||||||||||||||||||||||||||||||||||| || ||| |
seq2  GAGGTGCTCCATATTAGCACTGTTGCCTTTGGCTCTAGTACCTCCTCTCC  149

seq1  CAAAGCTAACAAGTGTTAG-CTTCTCCTAAGTTTTTCTCCTTACTAATGA  192
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CAAAGCTAACAAGTGTTAGCCTTCTCCTAAG-TTTTCTCCTTACTAATGA  198

seq1  TTCTGAGGTTTTGTAGCAGGAGGAATTTGGAATTGCTTTTTATTTCCTTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGTTTTGTAGCAGGAGGAATTTGGAATTGCTTTTTATTTCCTTT  248

seq1  CTTAAATGTGATTTACATTATTTTTATATTATTCACTAAAGTTTTTGTTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGTGATTTACATTATTTTTATATTATTCACTAAAGTTTTTGTTT  298

seq1  TTATATTGGTGGACCTTTTATTTATTGGTCAGATTTCTCTGCATTTTAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGGTGGACCTTTTATTTATTGGTCAGATTTCTCTGCATTTTAAT  348

seq1  TTATTTTTTTCAATATTGTATAGCTTATTCAGAAAGAATCTAAAGCAGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTCAATATTGTATAGCTTATTCAGAAAGAATCTAAAGCAGGG  398

seq1  TTGGAGAGATGACTCAGAGATAAAAAGCATTTGAATTAAATGTGAGGAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGATGACTCAGAGATAAAAAGCATTTGAATTAAATGTGAGGAAT  448

seq1  GGATTTTGGATACACAGAAAACATGCAAAAGCTAGGCAGGTCTACCAATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGGATACACAGAAAACATGCAAAAGCTAGGCAGGTCTACCAATG  498

seq1  GCTTGTTATTCCAGCACATGGAATTGGAAATCCCCAGGACAAGTTAGCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTATTCCAGCACATGGAATTGGAAATCCCCAGGACAAGTTAGCTG  548

seq1  TCTAGATCGAGTATTTGGAATTTGAAATCTCTGATTTCAGTTAAGGGGTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCGAGTATTTGGAATTTGAAATCTCTGATTTCAGTTAAGGGGTC  598

seq1  CTTTCTTCATAACCAAAATGGAGAGTGATAGAGGGGGACATCTATTGTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCATAACCAAAATGGAGAGTGATAGAGGGGGACATCTATTGTTA  648

seq1  ACTTTGGTCTCCAAATGCATGTGCTCATTCTTCATGTTTGCACCCATATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTCTCCAAATGCATGTGCTCATTCTTCATGTTTGCACCCATATA  698

seq1  TACACATGTGTTTGCATAAAAGTGATCATGCATACACTTGCATATATGCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTGTTTGCATAAAAGTGATCATGCATACACTTGCATATATGCC  748

seq1  ACATATATATGTGTTCAAAACTAAAATGAATAAAATAAAAAGTATATGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATGTGTTCAAAACTAAAATGAATAAAATAAAAAGTATATGGA  798

seq1  GCCATGAACAGGTAAATTATAGCTGTTGTTCATTACACCAGGAACTTTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAACAGGTAAATTATAGCTGTTGTTCATTACACCAGGAACTTTCT  848

seq1  TTTCTATTAATCTACATAACTGCAATATCTTCTGTCATTTATGATTACAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAATCTACATAACTGCAATATCTTCTGTCATTTATGATTACAG  898

seq1  TACCTCACCTTCCTGATTATGCTCTTCTGTAATCATGTAAGTTGATTTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACCTTCCTGATTATGCTCTTCTGTAATCATGTAAGTTGATTTTA  948

seq1  TTCATCAAACACCGAATATTTATAATGTTTTAGACACTAAGGAGACCAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAACACCGAATATTTATAATGTTTTAGACACTAAGGAGACCAAG  998

seq1  ACGATTTAAAAATGCTTTCTTCAGGATAGTTATAGTCTAGATGGCAGATC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTAAAAATGCTTTCTTCAGGATAGTTATAGTCTAGATGGCAGATC  1048

seq1  TGGTTTATAATACCAATTGGCTTACTTATTCATCACTGGAGAGAATATTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATAATACCAATTGGCTTACTTATTCATCACTGGAGAGAATATTT  1098

seq1  TCACAGATTCTTAAAGAAGATATCTCAAAGTACCTGATTGTAAGCAAGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATTCTTAAAGAAGATATCTCAAAGTACCTGATTGTAAGCAAGAA  1148

seq1  TTC  1145
      |||
seq2  TTC  1151

seq1: chr8_78269726_78269949
seq2: B6Ng01-270P11.g_72_295

seq1  AATACCTGTAAGAGATACAGTGAGTTTCAGGCAAGTTTGAGGAACTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGTAAGAGATACAGTGAGTTTCAGGCAAGTTTGAGGAACTTAAT  50

seq1  AAGACCATGTCTCAAAAGAAAAAAAAAATAAAACAAGAAAACAATCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATGTCTCAAAAGAAAAAAAAAATAAAACAAGAAAACAATCTCCC  100

seq1  CAAACTAAAACAAAACAAAACAAAAACCTGGGAATATAACTCAATGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAAACAAAACAAAACAAAAACCTGGGAATATAACTCAATGGTAG  150

seq1  ATTTCTATGAGGCCCTGGCCTCAATCCTTACTACTGAAGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGAGGCCCTGGCCTCAATCCTTACTACTGAAGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGAGAGA  224
      ||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGAGAGA  224