BAC Information

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BAC

Clone NameB6Ng01-271L01
Chromosome8 (Build37)
Map Location 115,579,541 - 115,702,058
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271L01.bB6Ng01-271L01.g
ACCGA073706GA073707
length950821
definitionB6Ng01-271L01.b B6Ng01-271L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,701,122 - 115,702,058)(115,579,541 - 115,580,425)
sequence
gaattctggacagccaaagctatatagagagacattttctcaaaaaatac
atatggcttataaataaatacaagggttttgcctcttttctgtattttct
cagatgctcattatcttatatatatattcaagggtttagttgagaacagc
atggttttgtttattaggttttgtttaagattttatttttaattatgtgt
ttacatgtgtatacagcaggggtatgtgtttatgagtgcaggtacctgga
aagatcagaagatctgatgccctgacactggaatggtgagcagccatgtg
gatgttgggaactgagcctgggtcctttgcaatagaagaacctgctctta
actgctgaactctctctctctctttctgttctggacgagtttgtcatacc
ctttctagaaaaggaaacaccctccttttaaggatttgtgatgtagttta
ggacagaagtagtaagtagacacccaagtcttaaattgtgatatctttca
tttgtatcctaaggatagtttgaaaaagtaaaattacttaaaaaatatag
caatcttacccctcccgtgtgtgtgtgtgtgtgtgtgcgtgcgcgcgtgc
ataaagtccctgacctggtattggtagatactgtctcttatctctctctt
tactctgcttttatcctctaccgtcccaatatgaagacaagggatgaaat
tacagtgaggagaaatatctagagaggcatactcaagatatgtctgtctg
tgctggagttgtgatgctttgggtgtccggggattacacagataaaagct
tttcaaataaatggaaccatgttgactcctcccatcctgacgtctcgtcg
tgagtcaagcccggcttcattgtatgtgaaaaggcacctgttgtttgccc
ttgtatgacttcccagtccctggagtgatattagaaattactgatataaa

gaattccttgatgaacttgatgataggatttattcattcatttatttagc
agtgctagtgctgggtattgaacccatggctttgcacaggcaggtgctct
accacggagttgtattcctagcagcctcattcttttgacagttgaaggtt
ttaatctttgaggctttttagtttgtattaggaaatttttaaaaaaggaa
ttttcccagaacaaataaaaaaaaaaacactaaagaataatcacaaaacc
aatagcaacaaaataaacacattaagaaagtattcttcaagatttttggt
ccatgctggggctctcttccatagcctggacaatgattttctgaactcag
ggctcagactaaatggaaagctttatgtcttctaaggtctctaaacacat
atccttccaggcctttataaggtcttataatttctcccaatcatttaaat
gcttttgaggctcttgtttttatttaaagaaatctttcccagcctttcct
ccagaactttaggtggtttatcattctgcttctgtagtttatcttaaatt
ggtgtttgtgctattgtttatagttatatttgttctgtgtgtttgtgtgt
gtgtgtgtgtgcatgtgagagagacagacacagagagacataggcagaga
ctgagagagacataaagagaaagagagacaaagagaaagatggagagaca
gaacaaatgtgggaaagccacatgtgacattgcagggtggtgctgggtta
tcgctggccaacaaaaaatacataagcagaaaagttttttttgccaaaat
gaggttttgagaactaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_115701122_115702058
seq2: B6Ng01-271L01.b_40_989 (reverse)

seq1  TTTAT-TCAGTTATTTCT-ATATCACTCCAGCGACTGTGAAGTCCTACAA  48
      ||||| ||||| |||||| |||||||||||| ||||| |||||| |||||
seq2  TTTATATCAGTAATTTCTAATATCACTCCAGGGACTGGGAAGTCATACAA  50

seq1  -GGCAAACAA-AGCTGCC-TTTCACATACAGTGAA-CCAGGCTTTGCTCA  94
       ||||||||| || |||| ||||||||||| |||| || |||||  ||||
seq2  GGGCAAACAACAGGTGCCTTTTCACATACAATGAAGCCGGGCTTGACTCA  100

seq1  GGACGTGAAGTGAGG-TGGGATGAGTC-ACATGGTTCCTTTTATTTG-AA  141
       |||| || || ||| ||||| ||||| |||||||||| |||||||| ||
seq2  CGACGAGACGTCAGGATGGGAGGAGTCAACATGGTTCCATTTATTTGAAA  150

seq1  AGCTTTTATCTGTTTAATCCCC-GACACCC-AAGCATCACAACTCAAGCA  189
      ||||||||||||| |||||||| ||||||| |||||||||||||| ||||
seq2  AGCTTTTATCTGTGTAATCCCCGGACACCCAAAGCATCACAACTCCAGCA  200

seq1  CAGACAGACATCTCTT-CTTATGCCTCTCT-GATATTTCTCCTCACTGTA  237
      ||||||||||| ||||   ||||||||||| |||||||||||||||||||
seq2  CAGACAGACATATCTTGAGTATGCCTCTCTAGATATTTCTCCTCACTGTA  250

seq1  ATTTCATCCCTTGTCTTCATACTGGGACGGTAGAGGCTAAAAGCAGAGTA  287
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ATTTCATCCCTTGTCTTCATATTGGGACGGTAGAGGATAAAAGCAGAGTA  300

seq1  AAGAGAGAGATAAGAGACAGTATCTACCAATACCAGCTCAGGGACTTTCT  337
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  AAGAGAGAGATAAGAGACAGTATCTACCAATACCAGGTCAGGGACTTTAT  350

seq1  GCACGCGCGCACGCACACACACACACACACACACGGGAGGGGTAAGATTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCGCGCACGCACACACACACACACACACACGGGAGGGGTAAGATTG  400

seq1  CTATATTTTTTAAGTAATTTTACTTTTTCAAACTATCCTTAGGATACAAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTTTAAGTAATTTTACTTTTTCAAACTATCCTTAGGATACAAA  450

seq1  TGAAAGATATCACAATTTAAGACTTGGGTGTCTACTTACTACTTCTGTCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATATCACAATTTAAGACTTGGGTGTCTACTTACTACTTCTGTCC  500

seq1  TAAACTACATCACAAATCCTTAAAAGGAGGGTGTTTCCTTTTCTAGAAAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACATCACAAATCCTTAAAAGGAGGGTGTTTCCTTTTCTAGAAAG  550

seq1  GGTATGACAAACTCGTCCAGAACAGAAAGAGAGAGAGAGAGTTCAGCAGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGACAAACTCGTCCAGAACAGAAAGAGAGAGAGAGAGTTCAGCAGT  600

seq1  TAAGAGCAGGTTCTTCTATTGCAAAGGACCCAGGCTCAGTTCCCAACATC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAGGTTCTTCTATTGCAAAGGACCCAGGCTCAGTTCCCAACATC  650

seq1  CACATGGCTGCTCACCATTCCAGTGTCAGGGCATCAGATCTTCTGATCTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTGCTCACCATTCCAGTGTCAGGGCATCAGATCTTCTGATCTT  700

seq1  TCCAGGTACCTGCACTCATAAACACATACCCCTGCTGTATACACATGTAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTACCTGCACTCATAAACACATACCCCTGCTGTATACACATGTAA  750

seq1  ACACATAATTAAAAATAAAATCTTAAACAAAACCTAATAAACAAAACCAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATTAAAAATAAAATCTTAAACAAAACCTAATAAACAAAACCAT  800

seq1  GCTGTTCTCAACTAAACCCTTGAATATATATATAAGATAATGAGCATCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTCAACTAAACCCTTGAATATATATATAAGATAATGAGCATCTG  850

seq1  AGAAAATACAGAAAAGAGGCAAAACCCTTGTATTTATTTATAAGCCATAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACAGAAAAGAGGCAAAACCCTTGTATTTATTTATAAGCCATAT  900

seq1  GTATTTTTTGAGAAAATGTCTCTCTATATAGCTTTGGCTGTCCAGAATTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTGAGAAAATGTCTCTCTATATAGCTTTGGCTGTCCAGAATTC  950

seq1: chr8_115579541_115580425
seq2: B6Ng01-271L01.g_68_888

seq1  GAATTCCTTGATGAACTTGATGATAGGATTTATTCATTCATTTATTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATGAACTTGATGATAGGATTTATTCATTCATTTATTTAGC  50

seq1  AGTGCTAGTGCTGGGTATTGAACCCATGGCTTTGCACAGGCAGGTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGTGCTGGGTATTGAACCCATGGCTTTGCACAGGCAGGTGCTCT  100

seq1  ACCACGGAGTTGTATTCCTAGCAGCCTCATTCTTTTGACAGTTGAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGAGTTGTATTCCTAGCAGCCTCATTCTTTTGACAGTTGAAGGTT  150

seq1  TTAATCTTTGAGGCTTTTTAGTTTGTATTAGGAAATTTTTAAAAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTGAGGCTTTTTAGTTTGTATTAGGAAATTTTTAAAAAAGGAA  200

seq1  TTTTCCCAGAACAAATAAAAAAAAAAACACTAAAGAATAATCACAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGAACAAATAAAAAAAAAAACACTAAAGAATAATCACAAAACC  250

seq1  AATAGCAACAAAATAAACACATTAAGAAAGTATTCTTCAAGATTTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAACAAAATAAACACATTAAGAAAGTATTCTTCAAGATTTTTGGT  300

seq1  CCATGCTGGGGCTCTCTTCCATAGCCTGGACAATGATTTTCTGAACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGGGGCTCTCTTCCATAGCCTGGACAATGATTTTCTGAACTCAG  350

seq1  GGCTCAGACTAAATGGAAAGCTTTATGTCTTCTAAGGTCTCTAAACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGACTAAATGGAAAGCTTTATGTCTTCTAAGGTCTCTAAACACAT  400

seq1  ATCCTTCCAGGCCTTTATAAGGTCTTATAATTTCTCCCAATCATTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCAGGCCTTTATAAGGTCTTATAATTTCTCCCAATCATTTAAAT  450

seq1  GCTTTTGAGGCTCTTGTTTTTATTTAAAGAAATCTTTCCCAGCCTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAGGCTCTTGTTTTTATTTAAAGAAATCTTTCCCAGCCTTTCCT  500

seq1  CCAGAACTTTAGGTGGTTTATCATTCTGCTTCTGTAGTTTATCTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTTTAGGTGGTTTATCATTCTGCTTCTGTAGTTTATCTTAAATT  550

seq1  GGTGTTTGTGCTATTGTTTATAGTTATATTTGTTCTGTGTGTTTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTGCTATTGTTTATAGTTATATTTGTTCTGTGTGTTTGTGTGT  600

seq1  GTGTGTGTGTGCATGTGAGAGAGACAGAGACAGAGAGACAGAGGCAGAGA  650
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GTGTGTGTGTGCATGTGAGAGAGACAGACACAGAGAGACATAGGCAGAGA  650

seq1  CAGAGAGAGACAGAAAGAGAAAGAGAGACAAAGAGAAAGATGGAGAGACA  700
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGACATAAAGAGAAAGAGAGACAAAGAGAAAGATGGAGAGACA  700

seq1  GAGACAAATGTGGG-AAGCCACATGTGCCATTGCAGGGTGGTGCT-GGTT  748
      || ||||||||||| |||||||||||| ||||||||||||||||| ||||
seq2  GA-ACAAATGTGGGAAAGCCACATGTGACATTGCAGGGTGGTGCTGGGTT  749

seq1  ATCGCTGGCC-ACCACACATACATAGGCAGTAAAG-TTTTTTTGCCAAGA  796
      |||||||||| || | | ||||||| |||| |||| |||||||||||| |
seq2  ATCGCTGGCCAACAAAAAATACATAAGCAGAAAAGTTTTTTTTGCCAAAA  799

seq1  TGAGGTTTTGAGAACTAACCAAGCTGGCCACCACACATACATAGGCAGTA  846
      ||||||||||||||||||||||                            
seq2  TGAGGTTTTGAGAACTAACCAA----------------------------  821

seq1  AAGTTTTTTTGCCAAGATGAGGTTTTGAGAACTAACCAA  885
                                             
seq2  ---------------------------------------  821