BAC Information

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BAC

Clone NameB6Ng01-271O24
Chromosome8 (Build37)
Map Location 72,870,782 - 73,029,242
singlet/doubletdoublet
Overlap geneUpf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik
Upstream geneLOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1
Downstream geneUba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271O24.bB6Ng01-271O24.g
ACCGA073890GA073891
length1,2071,104
definitionB6Ng01-271O24.b B6Ng01-271O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,870,782 - 72,871,983)(73,028,139 - 73,029,242)
sequence
gaattctgggagggcacatcctgctgagctgtaaaccagccaccaagcca
ggtcaagaaacagcctttcaagccgggcgtagtggcacacgcctttaatc
ccagcacttgcgaggcagaggcaggcggatttctgagttcgaggccagcc
tggtctacaaagtgagctccaggacagccagggctacacagagaaaccct
gtctcaaaaacaaaaagaaaaagaataaacaacaacaacaaaaaagaaac
agcctttctggaccaactatagtggtgtaggagtcagagagaagcagatc
tctgagagtccaagcccagcctgactacacagagtttcaggttagccagg
agatcctgtctcaaaaataaaattaaaaatgaagagaggaagctttctgc
atgtgcaaccagtcaggtgtggggctggtaccaccagaacactgagatcc
actgggctcacatccaccatgcaagctaagggacaggataccctcgtcac
cctgagagacaaatacaggattctccagcaccccacaaaggccaagctga
actggctatgtcaccaatcacagctgggcctcctctactacattttgtga
ctgttaaagagcaagcaccttaaggttctcagagacacatctggttctag
acggcaacaagatgaactaagacgaagggacagcaccttacacacaacag
ggccagagcccacagcaggtaacacagtaagacactattgccttagtcag
cacagggctgcaaattcttgtcccttggggaagtccagtttccatctcac
cagactgaaaggcaggctgtcaggtcactgtcccaattcaagggccaagg
ctgggtctctcagccccactcaggagaaagtctgctctaacacagtaaca
tttaggcacaccctaaagttctcgagtgaatcacggctaaaatggttgcc
tgcctgaagactaattctaattcctacagagacacagaattcagactctg
tgacagagcttccagaagaaacttataaaactaagtccccattgtgagct
gctatgactcagaccagagcatacttccaaagttcacagcaccaacactc
tttagtcctgcagctggcctcctagggacatggctttgccatgctgccct
cacccctcaagctagttgcctaaatgaatctccacgcgtgtgttcacagc
agcacct
gaattcttagtgcagaatcccaaactctgcagagttccatttccatccta
gaattcgaactccatgtccggccactggggtggaggccacacccaccata
cctgccaccattccctggtttttccaaactgtgaccatattctgtacctc
cttccataggagagccctaaaagcaagtcatacgctacctcccactcaag
ctctgctctccttagagtccactcctggccctccttccctctgtgtggct
tttgtctactgtaactcccatttcctcctccaggtggcactgttgcaggt
gatggggacaccaggagtgtcagaacaggaccctgaaaagttgcaccagc
tgaaaataaagtgagccctgttggccccttggcttgccaccttagattgg
caccttagattgagtcagcccagcgcagagccagtcagagagggcagaca
ctctgatgcactctggtgctcccagatgcgtacttcctaggatgtgcatg
tatatcacatctcttacagtttccactgctttcaggagtttgaatgtgac
cagtcacttgctcccctgtgaacccctctaggtctattgcaggtctctat
gcatagataggcatgcacaaacatcccctccccccaccaccatggccttt
cccatgagcctactgtgacccaacgagccacccggcctcctgggcatgct
cccaggctgggcttgaggtttggcagcaagcaggagggcccaaggcttgc
catagcccccctccccgctagctgtgcagctcagctaattcaccccatct
gggttttatttatagtttccatccgctcttgtagggtaattaaaaccatg
gaggcgatcggcgagggttctgcaggaactcaggtttgatgcggaatctg
ccgagtgagggcggctctccagggaccagaggaagccgggaaagaggccc
atggcgtcgagcccagcctgaccgccagctggctgaggtcgtgcctgctg
gctgcccttcaattgttgcctcacgcataaagagtctcccctcttgcagc
ttttccatcagctctgtatcttgggatggattcagccatctggggttgag
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72870782_72871983
seq2: B6Ng01-271O24.b_47_1253

seq1  GAATTCTGGGAGGGCACATCCTGCTGAGCTGTAAACCAGCCACCAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGGGCACATCCTGCTGAGCTGTAAACCAGCCACCAAGCCA  50

seq1  GGTCAAGAAACAGCCTTTCAAGCCGGGCGTAGTGGCACACGCCTTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGAAACAGCCTTTCAAGCCGGGCGTAGTGGCACACGCCTTTAATC  100

seq1  CCAGCACTTGCGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGCGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  150

seq1  TGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  200

seq1  GTCTCAAAAACAAAAAGAAAAAGAATAAACAACAACAACAAAAAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAACAAAAAGAAAAAGAATAAACAACAACAACAAAAAAGAAAC  250

seq1  AGCCTTTCTGGACCAACTATAGTGGTGTAGGAGTCAGAGAGAAGCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTGGACCAACTATAGTGGTGTAGGAGTCAGAGAGAAGCAGATC  300

seq1  TCTGAGAGTCCAAGCCCAGCCTGACTACACAGAGTTTCAGGTTAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGTCCAAGCCCAGCCTGACTACACAGAGTTTCAGGTTAGCCAGG  350

seq1  AGATCCTGTCTCAAAAATAAAATTAAAAATGAAGAGAGGAAGCTTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGTCTCAAAAATAAAATTAAAAATGAAGAGAGGAAGCTTTCTGC  400

seq1  ATGTGCAACCAGTCAGGTGTGGGGCTGGTACCACCAGAACACTGAGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAACCAGTCAGGTGTGGGGCTGGTACCACCAGAACACTGAGATCC  450

seq1  ACTGGGCTCACATCCACCATGCAAGCTAAGGGACAGGATACCCTCGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTCACATCCACCATGCAAGCTAAGGGACAGGATACCCTCGTCAC  500

seq1  CCTGAGAGACAAATACAGGATTCTCCAGCACCCCACAAAGGCCAAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGACAAATACAGGATTCTCCAGCACCCCACAAAGGCCAAGCTGA  550

seq1  ACTGGCTATGTCACCAATCACAGCTGGGCCTCCTCTACTACATTTTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTATGTCACCAATCACAGCTGGGCCTCCTCTACTACATTTTGTGA  600

seq1  CTGTTAAAGAGCAAGCACCTTAAGGTTCTCAGAGACACATCTGGTTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAGAGCAAGCACCTTAAGGTTCTCAGAGACACATCTGGTTCTAG  650

seq1  ACGGCAACAAGATGAACTAAGACGAAGGGACAGCACCTTACACACAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAACAAGATGAACTAAGACGAAGGGACAGCACCTTACACACAACAG  700

seq1  GGCCAGAGCCCACAGCAGGTAACACAGTAAGACACTATTGCCTTAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGCCCACAGCAGGTAACACAGTAAGACACTATTGCCTTAGTCAG  750

seq1  CACAGGGCTGCAAATTCTTGTCCCTTGGGGAAGTCCAGTTTCCATCTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCTGCAAATTCTTGTCCCTTGGGGAAGTCCAGTTTCCATCTCAC  800

seq1  CAGACTGAAAGGCAGGCTGTCAGGTCACTGTCCCAATTCAAGGGCCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAAAGGCAGGCTGTCAGGTCACTGTCCCAATTCAAGGGCCAAGG  850

seq1  CTGGGTCTCTCAGGCCCCACTCAGGAGAAAGTCTGCTCTAACACAGTAAC  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTCTCA-GCCCCACTCAGGAGAAAGTCTGCTCTAACACAGTAAC  899

seq1  ATTTAGGCACACCCTAAAGTTCTCGAGTGAATCACGGCTAAAATGGTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCACACCCTAAAGTTCTCGAGTGAATCACGGCTAAAATGGTTGC  949

seq1  CTGCCTGAAGACTAATTCTAATTCCTACAAGAGACACAGAATTCAGACCC  1000
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CTGCCTGAAGACTAATTCTAATTCCTAC-AGAGACACAGAATTCAGACTC  998

seq1  TGTGACAGAGCTTCCAGAAGAAACTTATAAAAACTAAGTCCCCATTGTGA  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTGACAGAGCTTCCAGAAGAAACTTAT-AAAACTAAGTCCCCATTGTGA  1047

seq1  GCTGCTATGACCTCAGACCAGAGGCATAC-TCCAAGGTTCACAGGCACCA  1099
      |||||||||| ||||||||||| |||||| ||||| ||||||| ||||||
seq2  GCTGCTATGA-CTCAGACCAGA-GCATACTTCCAAAGTTCACA-GCACCA  1094

seq1  CACCTCTTTAGTCTGCCAGCTGGCCCTCTA-GGACCTTGCTTGGCACATG  1148
         ||||||||||   |||||||||  ||| |||| | |||| || ||||
seq2  ACACTCTTTAGTCCTGCAGCTGGCCTCCTAGGGACATGGCTTTGC-CATG  1143

seq1  CTGCCCTCA-CCCTC-AGCTAGGTTGGCTAAATGATTCTCCAGGTGT---  1193
      ||||||||| ||||| ||||| |||| |||||||| |||||| | ||   
seq2  CTGCCCTCACCCCTCAAGCTA-GTTGCCTAAATGAATCTCCACGCGTGTG  1192

seq1  ------ACAGCACCT  1202
             ||||||||
seq2  TTCACAGCAGCACCT  1207

seq1: chr8_73028139_73029242
seq2: B6Ng01-271O24.g_64_1167 (reverse)

seq1  CCCCCTCACCCCAAGATGGCTG-ACCCATCCCAAGATACAGAGCTGATGG  49
      |||||||| ||| ||||||||| | |||||||||||||||||||||||||
seq2  CCCCCTCAACCCCAGATGGCTGAATCCATCCCAAGATACAGAGCTGATGG  50

seq1  GAAAGCTGC-AGAGGGAGAATTCTTTATTGCGTGAGGCA--CATTGGAGG  96
       |||||||| ||||||   | |||||| |||||||||||   |||| |||
seq2  AAAAGCTGCAAGAGGGGAGACTCTTTA-TGCGTGAGGCAACAATTGAAGG  99

seq1  GCAGCCCAGCAGGGCACGACCTCAGCCAGCTGGCGGTCAGGGCTGGGCTC  146
      |||| |||||| ||||||||||||||||||||||||||| ||||||||||
seq2  GCAG-CCAGCA-GGCACGACCTCAGCCAGCTGGCGGTCA-GGCTGGGCTC  146

seq1  GACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCCTGGGGAGCCGCC  196
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GACGCCATGGGCCTC-TTTCCCGGCTTCCTCTGGTCCCTGGAGAGCCGCC  195

seq1  CTCACTCGGCAGATTCCGCATCAAACCTGAGTTCCTGCAGAA-CCTCGCC  245
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCACTCGGCAGATTCCGCATCAAACCTGAGTTCCTGCAGAACCCTCGCC  245

seq1  GATCGCCTCCATGGTTTTAATTACCCTACAAGAGCGGATGGAAACTATAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCCTCCATGGTTTTAATTACCCTACAAGAGCGGATGGAAACTATAA  295

seq1  ATAAAACCCAGATGGGGTGAATTAGCTGAGCTGCACAGCTAGCGGGGAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCCAGATGGGGTGAATTAGCTGAGCTGCACAGCTAGCGGGGAGG  345

seq1  GGGGCTATGGCAAGCCTTGGGCCCTCCTGCTTGCTGCCAAACCTCAAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATGGCAAGCCTTGGGCCCTCCTGCTTGCTGCCAAACCTCAAGCC  395

seq1  CAGCCTGGGAGCATGCCCAGGAGGCCGGGTGGCTCGTTGGGTCACAGTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGAGCATGCCCAGGAGGCCGGGTGGCTCGTTGGGTCACAGTAG  445

seq1  GCTCATGGGAAAGGCCATGGTGGTGGGGGGAGGGGATGTTTGTGCATGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGGAAAGGCCATGGTGGTGGGGGGAGGGGATGTTTGTGCATGCC  495

seq1  TATCTATGCATAGAGACCTGCAATAGACCTAGAGGGGTTCACAGGGGAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGCATAGAGACCTGCAATAGACCTAGAGGGGTTCACAGGGGAGC  545

seq1  AAGTGACTGGTCACATTCAAACTCCTGAAAGCAGTGGAAACTGTAAGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGGTCACATTCAAACTCCTGAAAGCAGTGGAAACTGTAAGAGA  595

seq1  TGTGATATACATGCACATCCTAGGAAGTACGCATCTGGGAGCACCAGAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATACATGCACATCCTAGGAAGTACGCATCTGGGAGCACCAGAGT  645

seq1  GCATCAGAGTGTCTGCCCTCTCTGACTGGCTCTGCGCTGGGCTGACTCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAGTGTCTGCCCTCTCTGACTGGCTCTGCGCTGGGCTGACTCAA  695

seq1  TCTAAGGTGCCAATCTAAGGTGGCAAGCCAAGGGGCCAACAGGGCTCACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTGCCAATCTAAGGTGGCAAGCCAAGGGGCCAACAGGGCTCACT  745

seq1  TTATTTTCAGCTGGTGCAACTTTTCAGGGTCCTGTTCTGACACTCCTGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAGCTGGTGCAACTTTTCAGGGTCCTGTTCTGACACTCCTGGT  795

seq1  GTCCCCATCACCTGCAACAGTGCCACCTGGAGGAGGAAATGGGAGTTACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATCACCTGCAACAGTGCCACCTGGAGGAGGAAATGGGAGTTACA  845

seq1  GTAGACAAAAGCCACACAGAGGGAAGGAGGGCCAGGAGTGGACTCTAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAAAGCCACACAGAGGGAAGGAGGGCCAGGAGTGGACTCTAAGG  895

seq1  AGAGCAGAGCTTGAGTGGGAGGTAGCGTATGACTTGCTTTTAGGGCTCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGCTTGAGTGGGAGGTAGCGTATGACTTGCTTTTAGGGCTCTC  945

seq1  CTATGGAAGGAGGTACAGAATATGGTCACAGTTTGGAAAAACCAGGGAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAGGAGGTACAGAATATGGTCACAGTTTGGAAAAACCAGGGAAT  995

seq1  GGTGGCAGGTATGGTGGGTGTGGCCTCCACCCCAGTGGCCGGACATGGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGTATGGTGGGTGTGGCCTCCACCCCAGTGGCCGGACATGGAG  1045

seq1  TTCGAATTCTAGGATGGAAATGGAACTCTGCAGAGTTTGGGATTCTGCAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAATTCTAGGATGGAAATGGAACTCTGCAGAGTTTGGGATTCTGCAC  1095

seq1  TAAGAATTC  1104
      |||||||||
seq2  TAAGAATTC  1104