BAC Information

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BAC

Clone NameB6Ng01-272A03
Chromosome8 (Build37)
Map Location 101,619,680 - 101,714,603
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272A03.bB6Ng01-272A03.g
ACCGA073939GA073940
length1,1311,050
definitionB6Ng01-272A03.b B6Ng01-272A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,619,680 - 101,620,827)(101,713,551 - 101,714,603)
sequence
gaattcatagaggaaaaattgcaggaggacctatctacttaagaaagatc
atgagaattctgagttgaaagccatggccacaagtttcttagacatgcca
agtattttctaaagatcaaagtaattgagaaattatttcattcatcaagt
gtagatttggatatattggatatttcaaaaatttacaatggtttattctc
agagacttaaatctataaattatctcagttgagaagcataaatttctaat
catttaaaagtccaaattatggacaaaataaatgattactagctataaat
ataattagaccatttgattttatcttatgtttataacattaaagatatct
cattaagtaataatgtaaaaatatcaccattacctttgcattctcacaag
catcattaacagtgaaaatactgacagattatctatgtactaacttttat
aatctatgtgtctatctaacatatatccatacaactatgtaaacatttta
aaattgacaaatattttgatgatttcaattgcttctgtatattattagga
catcttattttcacagcaattattcatacagcaaagcagtattagcctat
gtagcaaagtctatgaatttataatctaggcaaaggcaaaaagagcataa
actttacatatataatccaaaggcctcaggttcatgatttatttcatgag
ggtttgttgaatgtttggatcctgaatccagaagcacaatgaacaaatac
cctacgttctataagacagtcctagtttatggtgttttgcagacataaat
atgaacagcagcttcttccactttaataaaaatattccccgttggaataa
caaattttccagtcaccatttgcaaaacaaatgactatatgatttaaaat
gaaaaattgttgtgtacgaaatgcctttttaaatcctaagtcactgtgta
acacccagagtgttttcagacctgggagatagccaaagtttgggcttctg
tttctagaaacaaaacaagacatcatgcactttaaatatctgtttagagc
tctgaaatttatgacgagcatccctgtgcattttttctacagttcacatt
tcgagaaacttgaaattcattatccaaatga
gaattccaagtgaaatgagtaaaatacaacagaacaataggagattagac
tctcctagcttgtataataaaaaagtatcaataaaggcctgtaaaattta
caggttgacactgggggaaacgtagcccattaagagtcacaaactagctt
aaatgggaatcacttccatccatccacattatactcatttgttcttgatg
ctgtggtttagtgagaagaattcatctttgtcatttttttaacagcctct
ggactttgagaccaaaaaatcctatactctgaaggtggaagcagccaata
tccacatcgacccacgtttcagtagcaggggaccctttaaggatacagca
acagtcaaaattgtcgtagaggatgctgatgagcctccggtcttctcttc
accaacttacctccttgaagttcatgaaaatgctgctttgaactctgtga
ttggccaagtgacagctcgtgaccctgatatcacttccagtccaataagg
tattttgtttctaactgttgtacacggtgcttcattggacaagagaagga
gccctgggactgtgcccctgtgatgaaggactttacattatttatctccc
ccccccctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctg
tgcatccacagtctactaagtcacaaacaatggctaggaataggaatatc
aaaataagtcaagtttttccagctcttggaaagcttgaaggggatgaaaa
attacaaatgttttgtagcactttgggaagaatcttttacatttcatgct
ttatatagtttatattttagtattgcatgagcaagggcagtttgtacttt
gtcgcttctaacagaaatagtgaattatatttagaattcagaagtatgag
accaccgtgtcaatgcattgggatgtccctatctgttctgaatatggctt
ggaaattaccttattctctgcttctgagcttctgatagtcagcatatcta
aatcaggtcattgtactaacaaagatacttgcaggtgtcatttttaaatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101619680_101620827
seq2: B6Ng01-272A03.b_50_1180

seq1  GAATTCATAGAGGAAAAATTGCAGGAGGACCTATCTACTTAAGAAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGGAAAAATTGCAGGAGGACCTATCTACTTAAGAAAGATC  50

seq1  ATGAGAATTCTGAGTTGAAAGCCATGGCCACAAGTTTCTTAGACATGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTCTGAGTTGAAAGCCATGGCCACAAGTTTCTTAGACATGCCA  100

seq1  AGTATTTTCTAAAGATCAAAGTAATTGAGAAATTATTTCATTCATCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTCTAAAGATCAAAGTAATTGAGAAATTATTTCATTCATCAAGT  150

seq1  GTAGATTTGGATATATTGGATATTTCAAAAATTTACAATGGTTTATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTGGATATATTGGATATTTCAAAAATTTACAATGGTTTATTCTC  200

seq1  AGAGACTTAAATCTATAAATTATCTCAGTTGAGAAGCATAAATTTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTAAATCTATAAATTATCTCAGTTGAGAAGCATAAATTTCTAAT  250

seq1  CATTTAAAAGTCCAAATTATGGACAAAATAAATGATTACTAGCTATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAGTCCAAATTATGGACAAAATAAATGATTACTAGCTATAAAT  300

seq1  ATAATTAGACCATTTGATTTTATCTTATGTTTATAACATTAAAGATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGACCATTTGATTTTATCTTATGTTTATAACATTAAAGATATCT  350

seq1  CATTAAGTAATAATGTAAAAATATCACCATTACCTTTGCATTCTCACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTAATAATGTAAAAATATCACCATTACCTTTGCATTCTCACAAG  400

seq1  CATCATTAACAGTGAAAATACTGACAGATTATCTATGTACTAACTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAACAGTGAAAATACTGACAGATTATCTATGTACTAACTTTTAT  450

seq1  AATCTATGTGTCTATCTAACATATATCCATACAACTATGTAAACATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGTGTCTATCTAACATATATCCATACAACTATGTAAACATTTTA  500

seq1  AAATTGACAAATATTTTGATGATTTCAATTGCTTCTGTATATTATTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACAAATATTTTGATGATTTCAATTGCTTCTGTATATTATTAGGA  550

seq1  CATCTTATTTTCACAGCAATTATTCATACAGCAAAGCAGTATTAGCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTTTCACAGCAATTATTCATACAGCAAAGCAGTATTAGCCTAT  600

seq1  GTAGCAAAGTCTATGAATTTATAATCTAGGCAAAGGCAAAAAGAGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGTCTATGAATTTATAATCTAGGCAAAGGCAAAAAGAGCATAA  650

seq1  ACTTTACATATATAATCCAAAGGCCTCAGGTTCATGATTTATTTCATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATATATAATCCAAAGGCCTCAGGTTCATGATTTATTTCATGAG  700

seq1  GGTTTGTTGAATGTTTGGATCCTGAATCCAGAAGCACAATGAACAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTGAATGTTTGGATCCTGAATCCAGAAGCACAATGAACAAATAC  750

seq1  CCTACGTTCTATAAGACAGTCCTAGTTTATGGTGTTTTGCAGACATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGTTCTATAAGACAGTCCTAGTTTATGGTGTTTTGCAGACATAAAT  800

seq1  ATGAACAGCAGCTTCTTCCACTTTAATAAAAATATTCCCCGTTGGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGCAGCTTCTTCCACTTTAATAAAAATATTCCCCGTTGGAATAA  850

seq1  CAAATTTTCCAGTCACCATTTGCAAAACAAATGACTATATGATTTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTCCAGTCACCATTTGCAAAACAAATGACTATATGATTTAAAAT  900

seq1  GAAAAATTGTTGTGTACGAAATGCCTTTTTAAATCCTAAGTCACTGTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGTTGTGTACGAAATGCCTTTTTAAATCCTAAGTCACTGTGTA  950

seq1  ACACCCAGAGTTGTTTTCAGACCTGGGAGATAGGCCAAAGTTTGGGCTTC  1000
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  ACACCCAGAG-TGTTTTCAGACCTGGGAGATA-GCCAAAGTTTGGGCTTC  998

seq1  TGTTTTCTAGAAACAAAACAAGACAATCCATGCAACTTTAAATATTCTGT  1050
      || ||||||||||||||||||||||   ||||| |||||||||| |||||
seq2  TG-TTTCTAGAAACAAAACAAGACA--TCATGC-ACTTTAAATA-TCTGT  1043

seq1  TTAGAGCTTCTTGAAATTTATGACAGAGCATTCCCTGTGCATTTTTTCTA  1100
      ||||||||   ||||||||||||| ||||| |||||||||||||||||||
seq2  TTAGAGCT--CTGAAATTTATGAC-GAGCA-TCCCTGTGCATTTTTTCTA  1089

seq1  CAAGTTTCAACATTTCAGAGAAAACATATGAAATCCATTAT-CAAATGA  1148
      | ||||   ||||||| |||||   |  |||||| |||||| |||||||
seq2  C-AGTT--CACATTTC-GAGAA---ACTTGAAATTCATTATCCAAATGA  1131

seq1: chr8_101713551_101714603
seq2: B6Ng01-272A03.g_66_1115 (reverse)

seq1  CATTTAAAAATGACA-CTG-AAATAT-TTTTTTTGTAAAATAAACTGGTT  47
      ||||||||||||||| ||| || ||| ||| || ||| ||| | ||| ||
seq2  CATTTAAAAATGACACCTGCAAGTATCTTTGTTAGTACAATGACCTGATT  50

seq1  TAGATATGCTGACTTATCAGAAAAGCTCAGAAGCAGAGAATAAGGTAATT  97
      ||||||||||||| ||||||  ||||||||||||||||||||||||||||
seq2  TAGATATGCTGAC-TATCAG--AAGCTCAGAAGCAGAGAATAAGGTAATT  97

seq1  TCAAAGCCATATTCAGAAACAAGATAGGGACAT-CCAATGCATTGACACG  146
      || |||||||||||||||   |||||||||||| ||||||||||||||||
seq2  TCCAAGCCATATTCAGAA--CAGATAGGGACATCCCAATGCATTGACACG  145

seq1  GTGGTCTCATACTTCTGAATTCTAAAATATAATTCACTATTTCTGTTAGA  196
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGGTCTCATACTTCTGAATTCT-AAATATAATTCACTATTTCTGTTAGA  194

seq1  AGCGACAAAGTACAAACTGCCCTTGCTCATGCAATACTAAAAATATAAAC  246
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGCGACAAAGTACAAACTGCCCTTGCTCATGCAATACT-AAAATATAAAC  243

seq1  TATATAAAGCATGAAATGTAAAAGATTCTTCCCAAAGTGCTACAAAACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGCATGAAATGTAAAAGATTCTTCCCAAAGTGCTACAAAACAT  293

seq1  TTGTAATTTTTCATCCCCTTCAAGCTTTCCAAGAGCTGGAAAAACTTGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTTTCATCCCCTTCAAGCTTTCCAAGAGCTGGAAAAACTTGAC  343

seq1  TTATTTTGATATTCCTATTCCTAGCCATTGTTTGTGACTTAGTAGACTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGATATTCCTATTCCTAGCCATTGTTTGTGACTTAGTAGACTGT  393

seq1  GGATGCACAGCACACACACACACACACACACACACACACACACACAGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCACAGCACACACACACACACACACACACACACACACACACAGAGA  443

seq1  GGGGGGGGGGAGATAAATAATGTAAAGTCCTTCATCACAGGGGCACAGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGAGATAAATAATGTAAAGTCCTTCATCACAGGGGCACAGTC  493

seq1  CCAGGGCTCCTTCTCTTGTCCAATGAAGCACCGTGTACAACAGTTAGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTCCTTCTCTTGTCCAATGAAGCACCGTGTACAACAGTTAGAAA  543

seq1  CAAAATACCTTATTGGACTGGAAGTGATATCAGGGTCACGAGCTGTCACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACCTTATTGGACTGGAAGTGATATCAGGGTCACGAGCTGTCACT  593

seq1  TGGCCAATCACAGAGTTCAAAGCAGCATTTTCATGAACTTCAAGGAGGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATCACAGAGTTCAAAGCAGCATTTTCATGAACTTCAAGGAGGTA  643

seq1  AGTTGGTGAAGAGAAGACCGGAGGCTCATCAGCATCCTCTACGACAATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGAAGAGAAGACCGGAGGCTCATCAGCATCCTCTACGACAATTT  693

seq1  TGACTGTTGCTGTATCCTTAAAGGGTCCCCTGCTACTGAAACGTGGGTCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGCTGTATCCTTAAAGGGTCCCCTGCTACTGAAACGTGGGTCG  743

seq1  ATGTGGATATTGGCTGCTTCCACCTTCAGAGTATAGGATTTTTTGGTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATATTGGCTGCTTCCACCTTCAGAGTATAGGATTTTTTGGTCTC  793

seq1  AAAGTCCAGAGGCTGTTAAAAAAATGACAAAGATGAATTCTTCTCACTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAGAGGCTGTTAAAAAAATGACAAAGATGAATTCTTCTCACTAA  843

seq1  ACCACAGCATCAAGAACAAATGAGTATAATGTGGATGGATGGAAGTGATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCATCAAGAACAAATGAGTATAATGTGGATGGATGGAAGTGATT  893

seq1  CCCATTTAAGCTAGTTTGTGACTCTTAATGGGCTACGTTTCCCCCAGTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAAGCTAGTTTGTGACTCTTAATGGGCTACGTTTCCCCCAGTGT  943

seq1  CAACCTGTAAATTTTACAGGCCTTTATTGATACTTTTTTATTATACAAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTAAATTTTACAGGCCTTTATTGATACTTTTTTATTATACAAGC  993

seq1  TAGGAGAGTCTAATCTCCTATTGTTCTGTTGTATTTTACTCATTTCACTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTCTAATCTCCTATTGTTCTGTTGTATTTTACTCATTTCACTT  1043

seq1  GGAATTC  1053
      |||||||
seq2  GGAATTC  1050