BAC Information

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BAC

Clone NameB6Ng01-272F21
Chromosome8 (Build37)
Map Location 17,736,406 - 17,901,407
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272F21.bB6Ng01-272F21.g
ACCGA074213GA074214
length1,028565
definitionB6Ng01-272F21.b B6Ng01-272F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,736,406 - 17,737,431)(17,900,837 - 17,901,407)
sequence
gaattcaccttcaggaaggactcagatccacagtagttggacttatggcc
actgacaatgagaagaggcttagcacagtgagtatttcaaattgtaaagt
cataaggtgaaatgatatgaaataactgataatttttatgtgcaagcaaa
tgcattctcggagaacagaaaaaactaaagttgtatctgtcagcacaagt
gatctagaacagattgttggaatttaaagaaattattcactgataaacaa
tatttgtgtttttcataagcacatgatataatgactctaaaatgtgtcac
atgtggcataaagaatagcatttaaaaccatatatcatacgaagaaatag
tgatgtttaatccatactcagttaccccaagatggtccagagattacaat
gggcaatgtcggatttagcatcttaccaatactgcagtcataaaatcatg
ggaaaatatacttataatgaatacaagaatatttttttcaggtatgaata
gaagtttaagaaaataaaaaaaaaatgaatctagaattagaagatgatat
agggttaagagtactgactgttattccagagaacctaggattttgttcct
agcacccacatggcagaatatggccatctgtaacttcagttcctgggaat
tcagttagctattctggcctttgtaggcaatgaaagtgtgaggtaaacgt
acatacatgcagatgacatgcccagacaaactttcaaaatattaatattt
taaagttaaaatctaaataacatttgagttcttttgtgattgggttacct
cactcaggataatgccctccaggtccaaccatttgcctaggaatttcata
aattcattctttttaatagctgagtagtactccattgtgtaaatgtacca
cattttttgtatccattcctctgttgagggacatctggggttctttccag
cttctgggcgattataaataaaagctgctatgaacatagtgggagcatgt
ttctttttactaggtggacatcttctgg

atggactcaaaatcaaaacccctaatgcaaaaaccctggaagaaactgct
gatactaaagtcgagactaaagacactaaggaatgttcaaatctcaggtc
atgtcaagagacaagatagagagtcaccaccatagcctaaagtcattttc
tgggttatttgtatctaaactagttctgatttattttgagatatttgttc
tgagtatatttattggaagacacccccaaagtcacacagaacaaatgtac
acattagataacatctgtacttcaggcaaagaaataatacagtttgttgt
catactggtatgtgtggatatggactagtgatacaaaggagcctgtgcag
gtgtagagaatgacctacacattgttggtgttaggagggagctcaccaac
ctgcatagtcactttcctgtgtatgtatgtgtgtgtgtgtgtatatatat
atatatgtgaaaaatgataaattaaagcagtgaagtatgatgtatatttc
ctctttttaagtagttttttttcaaaaactatttgaataggattctattg
gagcaatctgatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17736406_17737431
seq2: B6Ng01-272F21.b_50_1077

seq1  GAATTCACCTTCAGGAAGGACTCAGATCCACAGTAGTTGGACTTATGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCAGGAAGGACTCAGATCCACAGTAGTTGGACTTATGGCC  50

seq1  ACTGACAATGAGAAGAGGCTTAGCACAGTGAGTATTTCAAATTGTAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAATGAGAAGAGGCTTAGCACAGTGAGTATTTCAAATTGTAAAGT  100

seq1  CATAAGGTGAAATGATATGAAATAACTGATAATTTTTATGTGCAAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTGAAATGATATGAAATAACTGATAATTTTTATGTGCAAGCAAA  150

seq1  TGCATTCTCGGAGAACAGAAAAAACTAAAGTTGTATCTGTCAGCACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCGGAGAACAGAAAAAACTAAAGTTGTATCTGTCAGCACAAGT  200

seq1  GATCTAGAACAGATTGTTGGAATTTAAAGAAATTATTCACTGATAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGAACAGATTGTTGGAATTTAAAGAAATTATTCACTGATAAACAA  250

seq1  TATTTGTGTTTTTCATAAGCACATGATATAATGACTCTAAAATGTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTTTTTCATAAGCACATGATATAATGACTCTAAAATGTGTCAC  300

seq1  ATGTGGCATAAAGAATAGCATTTAAAACCATATATCATACGAAGAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCATAAAGAATAGCATTTAAAACCATATATCATACGAAGAAATAG  350

seq1  TGATGTTTAATCCATACTCAGTTACCCCAAGATGGTCCAGAGATTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTAATCCATACTCAGTTACCCCAAGATGGTCCAGAGATTACAAT  400

seq1  GGGCAATGTCGGATTTAGCATCTTACCAATACTGCAGTCATAAAATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGTCGGATTTAGCATCTTACCAATACTGCAGTCATAAAATCATG  450

seq1  GGAAAATATACTTATAATGAATACAAGAATATTTTTTTCAGGTATGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATACTTATAATGAATACAAGAATATTTTTTTCAGGTATGAATA  500

seq1  GAAGTTTAAGAAAATAAAAAAAAAATGAATCTAGAATTAGAAGATGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAAGAAAATAAAAAAAAAATGAATCTAGAATTAGAAGATGATAT  550

seq1  AGGGTTAAGAGTACTGACTGTTATTCCAGAGAACCTAGGATTTTGTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAAGAGTACTGACTGTTATTCCAGAGAACCTAGGATTTTGTTCCT  600

seq1  AGCACCCACATGGCAGAATATGGCCATCTGTAACTTCAGTTCCTGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACATGGCAGAATATGGCCATCTGTAACTTCAGTTCCTGGGAAT  650

seq1  TCAGTTAGCTATTCTGGCCTTTGTAGGCAATGAAAGTGTGAGGTAAACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCTATTCTGGCCTTTGTAGGCAATGAAAGTGTGAGGTAAACGT  700

seq1  ACATACATGCAGATGACATGCCCAGACAAACTTTCAAAATATTAATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCAGATGACATGCCCAGACAAACTTTCAAAATATTAATATTT  750

seq1  TAAAGTTAAAATCTAAATAACATTTGAGTTCTTTTGTGATTGGGTTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAAAATCTAAATAACATTTGAGTTCTTTTGTGATTGGGTTACCT  800

seq1  CACTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATA  850

seq1  AATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCA  900

seq1  CATTTTTTGTATCCATTCCTCTGTTGAGGGACATCT-GGGTTCTTTCCAG  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATTTTTTGTATCCATTCCTCTGTTGAGGGACATCTGGGGTTCTTTCCAG  950

seq1  CTTCT-GGCGATTATAAAT-AAAGCTGCTATGAACATAGT-GGAGCATGT  996
      ||||| ||||||||||||| |||||||||||||||||||| |||||||||
seq2  CTTCTGGGCGATTATAAATAAAAGCTGCTATGAACATAGTGGGAGCATGT  1000

seq1  TTCTTTTTTACTAGTTGGAACATCTTCTGG  1026
      ||| |||||||||| ||| |||||||||||
seq2  TTC-TTTTTACTAGGTGG-ACATCTTCTGG  1028


seq1: chr8_17900837_17901407
seq2: B6Ng01-272F21.g_65_635 (reverse)

seq1  AAAATCAGATTGCTCCAATAGAATCCTATTCAAATAGTTTTTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGATTGCTCCAATAGAATCCTATTCAAATAGTTTTTGAAAAAAA  50

seq1  ACTACTTAAAAAGAGGAAATATACATCATACTTAATTGCTTTATTTTATC  100
      ||||||||||||||||||||||||||||||||| | ||||||| ||||||
seq2  ACTACTTAAAAAGAGGAAATATACATCATACTTCACTGCTTTAATTTATC  100

seq1  ATTTTTCACATATATATATATATACACACACACACACATACATACACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCACATATATATATATATACACACACACACACATACATACACAGG  150

seq1  AAAGTGACTATGCAGGTTGGTGAGCTCCCTCCTAACACCAACAATGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACTATGCAGGTTGGTGAGCTCCCTCCTAACACCAACAATGTGTA  200

seq1  GGTCATTCTCTACACCTGCACAGGCTCCTTTGTATCACTAGTCCATATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCTCTACACCTGCACAGGCTCCTTTGTATCACTAGTCCATATCC  250

seq1  ACACATACCAGTATGACAACAAACTGTATTATTTCTTTGCCTGAAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACCAGTATGACAACAAACTGTATTATTTCTTTGCCTGAAGTACA  300

seq1  GATGTTATCTAATGTGTACATTTGTTCTGTGTGACTTTGGGGGTGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATCTAATGTGTACATTTGTTCTGTGTGACTTTGGGGGTGTCTTC  350

seq1  CAATAAATATACTCAGAACAAATATCTCAAAATAAATCAGAACTAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATATACTCAGAACAAATATCTCAAAATAAATCAGAACTAGTTTA  400

seq1  GATACAAATAACCCAGAAAATGACTTTAGGCTATGGTGGTGACTCTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAATAACCCAGAAAATGACTTTAGGCTATGGTGGTGACTCTCTAT  450

seq1  CTTGTCTCTTGACATGACCTGAGATTTGAACATTCCTTAGTGTCTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCTTGACATGACCTGAGATTTGAACATTCCTTAGTGTCTTTAGT  500

seq1  CTCGACTTTAGTATCAGCAGTTTCTTCCAGGGTTTTTGCATTAGGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTTAGTATCAGCAGTTTCTTCCAGGGTTTTTGCATTAGGGGTTT  550

seq1  TGATTTTGAGTCCATGAATTC  571
      |||||||||||||||||||||
seq2  TGATTTTGAGTCCATGAATTC  571


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