BAC Information

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BAC

Clone NameB6Ng01-272H21
Chromosome8 (Build37)
Map Location 104,728,037 - 104,729,208
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H21.bB6Ng01-272H21.g
ACCGA074305GA074306
length1,1851,169
definitionB6Ng01-272H21.b B6Ng01-272H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggaatccaccttcttgatttctttatatatattggttattagtcccc
tatctgatttggacaggtaaagatactttcccaatctgttggtggccttt
ttgtcttattgatggtgtcttttgtcttggagaagctttataattttatg
aggtcccagttgttgattctcaatcttacagcaaaagccattgctgttct
attcaggaatttttcccctgtgcccatatctttgaggcttttccccactt
tctcctctataagtttcagtgtctctggttttatgtggagttacttgatc
cacttagatttgaccttagtacaaggagataggaatggatcaaatcacat
tcttctacatgataacctccagttgtgtcaacaccatttgttgaaaatgc
tatctttttccactggatggttttagctcccttgtcaaagatcaagtgac
cataagtgtttgggttcatatctgggtcttcatttgtattccattggtct
acttgtctgttgctataccagtatcatgcagtttttatcacaattgcttt
gtagtacagctttaggtcaggcatggtgattctgccagaggttcttttat
cattgagaagagtttttgctatcctaggttttttgtttttccagatgaat
ttgcagatagccctttctaattcgttgaagaattgagttggaattttgat
ggggattgcattgaatctatagattgcttttggcaagatagccattttta
ctctattgatcctgccatccatttgcatgggaaatctttccatcttctga
gatcttctttgatttctttcttcagagacttgaagttcttatcatacaga
tctttcacttctttagttagagtcaagccgaggtatttttatactatttg
tgactattatgaagagtgttgttttccctattttttctcacctgttttct
tgtgtagagaaagagcatgactgtttgagtaatttattatcagcctactt
cacttaagctgttacaggttaggagtcactggtgaactttaggtcactta
tatatacctaatcctatcatctaacaaaaagggtaaattgactctctcca
actgtgatatccatggattcttcccattatgatga

gaattctttgtcattctaagcaatatcagctagaaacagtggaaatggaa
aatggttgtcagagaagaaaaggaacgattatcgttttaactcttgttcc
ctgtaattgttccttactaaaagattacctccttcatgcacatctattgc
accattgccatcatgatgtctagaacccgtgataaaaaccttaatttaca
ggggcaaatttgttgaagccttccttcaaggtacatccttggtagacagc
tccattatcgaactactcaagaatgttggaagaacaactgattttgtggc
tacagttggaggagctcagagaaatctctggctattcagaaaatgatgtg
gaagctcatgtgcctggcaaccaaagaatcagtgctctgggtgggaaaat
ttggaggtaacattaattagattgactataacggattggttaaccaaatt
tttcagaaaagggatcctgttaagtgtataggaagggagaagttttataa
ggctggaataaaatgagtcataagactagcaatggtggttaaggaaagaa
gcagtggtcatctcaggaaggacttaaattatggctggagaaaaggtgca
tcctggtgactatagaaagccacatcacttcttagattagaagctgcttc
ctgaagaaggatggattatgaaaaactacattctaaattagttgtagtat
attatattaggactggggatgttaactaaagggaagtaaagtttgtggaa
gtaaaagtaacttaaatataaaatatcacgagtactataaactttaaatt
tggaaggaaacatagagattagaaagaagtagccgggcattgtggcacac
gcctttaatcccaccacttgggaggcaggtgaaatttctgagctcgaggc
cagcctggtctacagagtgagttccaggacagccaggactacacagagaa
accctgtcttcaaacaaacaaacaaacaacaaccaacaaaccaacccaaa
acaaacgaattaagaagtaaggatgtaagatgatataaaataaatgcaag
caagttaaaggagcactaatcactgtacgaactttttaccaagaaatccc
atgaacaggaaagggtggtttgaaattaaccgtattcagacggtactatt
ctgtaactggtaaccaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104728037_104729208
seq2: B6Ng01-272H21.g_67_1235

seq1  GAATTCTTTGTCATTCTAAGCAATATCAGCTAGAAACAGTGGAAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCATTCTAAGCAATATCAGCTAGAAACAGTGGAAATGGAA  50

seq1  AATGGTTGTCAGAGAAGAAAAGGAACGATTATCGTTTTAACTCTTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGTCAGAGAAGAAAAGGAACGATTATCGTTTTAACTCTTGTTCC  100

seq1  CTGTAATTGTTCCTTACTAAAAGATTACCTCCTTCATGCACATCTATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTGTTCCTTACTAAAAGATTACCTCCTTCATGCACATCTATTGC  150

seq1  ACCATTGCCATCATGATGTCTAGAACCCGTGATAAAAACCTTAATTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCCATCATGATGTCTAGAACCCGTGATAAAAACCTTAATTTACA  200

seq1  GGGGCAAATTTGTTGAAGCCTTCCTTCAAGGTACATCCTTGGTAGACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAATTTGTTGAAGCCTTCCTTCAAGGTACATCCTTGGTAGACAGC  250

seq1  TCCATTATCGAACTACTCAAGAATGTTGGAAGAACAACTGATTTTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATCGAACTACTCAAGAATGTTGGAAGAACAACTGATTTTGTGGC  300

seq1  TACAGTTGGAGGAGCTCAGAGAAATCTCTGGCTATTCAGAAAATGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGGAGGAGCTCAGAGAAATCTCTGGCTATTCAGAAAATGATGTG  350

seq1  GAAGCTCATGTGCCTGGCAACCAAAGAATCAGTGCTCTGGGTGGGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCATGTGCCTGGCAACCAAAGAATCAGTGCTCTGGGTGGGAAAAT  400

seq1  TTGGAGGTAACATTAATTAGATTGACTATAACGGATTGGTTAACCAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTAACATTAATTAGATTGACTATAACGGATTGGTTAACCAAATT  450

seq1  TTTCAGAAAAGGGATCCTGTTAAGTGTATAGGAAGGGAGAAGTTTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAAGGGATCCTGTTAAGTGTATAGGAAGGGAGAAGTTTTATAA  500

seq1  GGCTGGAATAAAATGAGTCATAAGACTAGCAATGGTGGTTAAGGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAATAAAATGAGTCATAAGACTAGCAATGGTGGTTAAGGAAAGAA  550

seq1  GCAGTGGTCATCTCAGGAAGGACTTAAATTATGGCTGGAGAAAAGGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTCATCTCAGGAAGGACTTAAATTATGGCTGGAGAAAAGGTGCA  600

seq1  TCCTGGTGACTATAGAAAGCCACATCACTTCTTAGATTAGAAGCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGACTATAGAAAGCCACATCACTTCTTAGATTAGAAGCTGCTTC  650

seq1  CTGAAGAAGGATGGATTATGAAAAACTACATTCTAAATTAGTTGTAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGGATGGATTATGAAAAACTACATTCTAAATTAGTTGTAGTAT  700

seq1  ATTATATTAGGACTGGGGATGTTAACTAAAGGGAAGTAAAGTTTGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTAGGACTGGGGATGTTAACTAAAGGGAAGTAAAGTTTGTGGAA  750

seq1  GTAAAAGTAACTTAAATATAAAATATCACGAGTACTATAAACTTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTAACTTAAATATAAAATATCACGAGTACTATAAACTTTAAATT  800

seq1  TGGAAGGAAACATAGAGATTAGAAAGAAGTAGCCGGGCATTGTGGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAACATAGAGATTAGAAAGAAGTAGCCGGGCATTGTGGCACAC  850

seq1  GCCTTTAATCCCACCACTTGGGAGGCAGGTG-AATTTCTGAGCTCGAGGC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCTTTAATCCCACCACTTGGGAGGCAGGTGAAATTTCTGAGCTCGAGGC  900

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAA  950

seq1  ACCCTGTCTCAAAACAAACAAACAAACAAACAAACAAACAAACAAACACA  999
      |||||||||  ||||||||||||||||||   ||| ||||||| ||| | 
seq2  ACCCTGTCTTCAAACAAACAAACAAACAA--CAACCAACAAACCAAC-CC  997

seq1  AAAACAAAAACAGAAATAAAGAAGTAAGGATGTAAGATGATATAAAATAA  1049
      |||||||    |  ||| ||||||||||||||||||||||||||||||||
seq2  AAAACAA----ACGAATTAAGAAGTAAGGATGTAAGATGATATAAAATAA  1043

seq1  ATGCAAGCAAGTT-AAGGAGCACTAAATCACTGTACGGAC-TTTTACCAA  1097
      ||||||||||||| |||||||||| |||||||||||| || |||||||||
seq2  ATGCAAGCAAGTTAAAGGAGCACT-AATCACTGTACGAACTTTTTACCAA  1092

seq1  GAA--TCCATGAACAGG-AAGGGT-GTTTGAAA-TAACAGTATTCAGACA  1142
      |||   ||||||||||| |||||| |||||||| |||| |||||||||| 
seq2  GAAATCCCATGAACAGGAAAGGGTGGTTTGAAATTAACCGTATTCAGAC-  1141

seq1  GGTACTTTATTCTGTATCTGTGAACCAATG  1172
      |||||  ||||||||| |||  ||||||||
seq2  GGTAC--TATTCTGTAACTGGTAACCAATG  1169


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