BAC Information

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BAC

Clone NameB6Ng01-272L21
Chromosome8 (Build37)
Map Location 100,820,684 - 100,932,798
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272L21.bB6Ng01-272L21.g
ACCGA074491GA074492
length1,187937
definitionB6Ng01-272L21.b B6Ng01-272L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,931,577 - 100,932,798)(100,820,684 - 100,821,593)
sequence
gaattcaaaccacagtttcatcaaaagggtgagagaatgaagatacaatc
ccacatgccacccaggtataagaaaactctgaaaaatctttgcatgggta
aaataatacaagcacatgtgggtgggtttgatttattatatactcccact
taagaccttgttgtaacatgtgaatctagcaattagattaggaatgcatt
ataggatatttgtatttatataaaaaactttcataaaacctcaatcttat
tgctattgctctattattaaaagtcagctggaggagactgcaatcatttt
taataaaaatgcttacattactgtgtgacaagagatttggcgctttttgt
gactcttccgatgacacagctggtcattgcgtacatttattttctatgac
ttctattctgcaattattacgcttcattgaaacttgtattgtagtatgga
caaatgaaacaacatgaaaagcacactaatgtgagtcaaaatgactgcat
acatgacaaaatttccctatgcattttgtttactaagttagaaattcttt
cagtaccaacacacataagaaaacgttgtttatttgctcgcttgttcctt
ggagacagaagctcattttatagccctggctggcccataatccacatgta
gggcagacgggcctggaattcagagattcaccttcttcagtctcctgaac
gccttaattaaaagtaaacaatgatgcacttggcttccaggtaaatttgt
aaacaactttggagaacagtcacacgatgaattgtgttatatattgatta
taactgtttctcaaaaattcaccatacatctgttgatgaccataagccag
agtatttttgatctgtagttacccaaggaacaactttgaagacacatgct
tgtgagtgactgaaagataaatatgtatctatttgactaaacacttgaat
agtaaaattccatgatagtgatacttttagaaataatatatttttgactt
gggaatgctatagtaaatatagcacagatgagttttctagtcacacttag
caggcaagagaaatttacaattcataatagtctaaaattaagtatatctt
ggataccattagaatgtacatgacctttctgaaaacaaggcagcaagctt
ctaagcctagagacggtaattgggagatctattttta

gaattctctgaattcttattaactgaaatttctagcacctcacgttgact
gtgatatgaaaattaagctaaaattttctccatgagattgtccataagat
tggtcaaaatgaggggagacgtagaagtagaaagaaggaagaaggtgtat
gtgagatgaactgttggttaagtcagaaaaagtcgggtatacaaagagag
agagagaaagagagagagagagagattaaaggagggagcaagagggagga
aggaaaagagggagagacagagagaaaaaatgcacacacagagacagata
cagagagtataatatactttatttcaggaagattcatctcctaaactctc
tataacatcccaagagcagctccaccatctggagatcaagctttcaaaca
caaggctgcaggagacactttatactctaactctaaaagactccaaatgc
taactttcatttaaacagacaggcacaggatctaattatcactccttcaa
aaacccattcctgtttttttttctttaagttttacagttcactggagagt
ttagaatgtttattatttaaggacatcataaaagaaaaataaatgaatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatacatagatatatatatatctttataaaaaaatgaatggaaaaatta
tttattttgtttctgtaataatatttcaatggaaaaataccacccataaa
tcaagtggggaaaaattagtctttagactagtgagagagagcgtgtgtgt
tgatagatatgtgaaggaaaaaaaacttttggatatacctactaattcaa
aatggtaccctgagagaataacgcgaataaaataacaatagaggaagcta
ccgcctaattcctgtattggtttatatttttcaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_100931577_100932798
seq2: B6Ng01-272L21.b_48_1234 (reverse)

seq1  TAAAAATAGATCT-CCATTTACTTGTCTTCTTTTATGGCCCTTAGAAAGA  49
      ||||||||||||| ||| ||||    | ||| |   ||  |||||||   
seq2  TAAAAATAGATCTCCCAATTAC----CGTCTCT--AGG--CTTAGAA---  39

seq1  CTTTGCTTTTCTTTTTTTTTTTTTCAGAAAGTTCATGTACATTCCTCATT  99
          ||||     |   || ||||||||||| ||||||||||| || || 
seq2  ----GCTT---GCTGCCTTGTTTTCAGAAAGGTCATGTACATT-CTAAT-  80

seq1  GGGTTTATTTCAAGATATACTTTATTTTTAGACCTATTATGAATGGTAAA  149
       |||    | |||||||||| ||| ||||||| ||||||||||| |||||
seq2  -GGT---ATCCAAGATATAC-TTAATTTTAGA-CTATTATGAATTGTAAA  124

seq1  TTTTCTCCTGCCTGCTAAAGTGTGACCTAGGAAAACTTCATCTGTGCTAT  199
       |||||| |||||||| |||||||| ||| |||||| |||||||||||||
seq2  -TTTCTCTTGCCTGCT-AAGTGTGA-CTA-GAAAAC-TCATCTGTGCTAT  169

seq1  ATTTACTTATTAGCAATTCCCAAGTCAAAAATATATTATTTCTAAAAGTA  249
      |||||||   |||| |||||||||||||||||||||||||||||||||||
seq2  ATTTACT--ATAGC-ATTCCCAAGTCAAAAATATATTATTTCTAAAAGTA  216

seq1  TCACTTATCATGGAATTTTACTATTCAAGTGTTTAGTCAAATAGATACAT  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAC-TATCATGGAATTTTACTATTCAAGTGTTTAGTCAAATAGATACAT  265

seq1  ATTTTATCTTTCAGTCACTCACAAGCATGTGTCTTCAAAGTTGTTCCTTG  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTATCTTTCAGTCACTCACAAGCATGTGTCTTCAAAGTTGTTCCTTG  314

seq1  GGTAACTACAGATCAAAAATACTCTGGCTTATGGTCATCAACAGATGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTACAGATCAAAAATACTCTGGCTTATGGTCATCAACAGATGTAT  364

seq1  GGTGAATTTTTGAGAAACAGTTATAATCAATATATAACACAATTCATCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTTTGAGAAACAGTTATAATCAATATATAACACAATTCATCGT  414

seq1  GTGACTGTTCTCCAAAGTTGTTTACAAATTTACCTGGAAGCCAAGTGCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTTCTCCAAAGTTGTTTACAAATTTACCTGGAAGCCAAGTGCAT  464

seq1  CATTGTTTACTTTTAATTAAGGCGTTCAGGAGACTGAAGAAGGTGAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTACTTTTAATTAAGGCGTTCAGGAGACTGAAGAAGGTGAATCT  514

seq1  CTGAATTCCAGGCCCGTCTGCCCTACATGTGGATTATGGGCCAGCCAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCCAGGCCCGTCTGCCCTACATGTGGATTATGGGCCAGCCAGGG  564

seq1  CTATAAAATGAGCTTCTGTCTCCAAGGAACAAGCGAGCAAATAAACAACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATGAGCTTCTGTCTCCAAGGAACAAGCGAGCAAATAAACAACG  614

seq1  TTTTCTTATGTGTGTTGGTACTGAAAGAATTTCTAACTTAGTAAACAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATGTGTGTTGGTACTGAAAGAATTTCTAACTTAGTAAACAAAA  664

seq1  TGCATAGGGAAATTTTGTCATGTATGCAGTCATTTTGACTCACATTAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGGGAAATTTTGTCATGTATGCAGTCATTTTGACTCACATTAGTG  714

seq1  TGCTTTTCATGTTGTTTCATTTGTCCATACTACAATACAAGTTTCAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCATGTTGTTTCATTTGTCCATACTACAATACAAGTTTCAATGA  764

seq1  AGCGTAATAATTGCAGAATAGAAGTCATAGAAAATAAATGTACGCAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAATAATTGCAGAATAGAAGTCATAGAAAATAAATGTACGCAATGA  814

seq1  CCAGCTGTGTCATCGGAAGAGTCACAAAAAGCGCCAAATCTCTTGTCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGTCATCGGAAGAGTCACAAAAAGCGCCAAATCTCTTGTCACA  864

seq1  CAGTAATGTAAGCATTTTTATTAAAAATGATTGCAGTCTCCTCCAGCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGTAAGCATTTTTATTAAAAATGATTGCAGTCTCCTCCAGCTGA  914

seq1  CTTTTAATAATAGAGCAATAGCAATAAGATTGAGGTTTTATGAAAGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATAATAGAGCAATAGCAATAAGATTGAGGTTTTATGAAAGTTTT  964

seq1  TTATATAAATACAAATATCCTATAATGCATTCCTAATCTAATTGCTAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAATACAAATATCCTATAATGCATTCCTAATCTAATTGCTAGAT  1014

seq1  TCACATGTTACAACAAGGTCTTAAGTGGGAGTATATAATAAATCAAACCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTTACAACAAGGTCTTAAGTGGGAGTATATAATAAATCAAACCC  1064

seq1  ACCCACATGTGCTTGTATTATTTTACCCATGCAAAGATTTTTCAGAGTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATGTGCTTGTATTATTTTACCCATGCAAAGATTTTTCAGAGTTT  1114

seq1  TCTTATACCTGGGTGGCATGTGGGATTGTATCTTCATTCTCTCACCCTTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACCTGGGTGGCATGTGGGATTGTATCTTCATTCTCTCACCCTTT  1164

seq1  TGATGAAACTGTGGTTTGAATTC  1222
      |||||||||||||||||||||||
seq2  TGATGAAACTGTGGTTTGAATTC  1187


seq1: chr8_100820684_100821593
seq2: B6Ng01-272L21.g_63_999

seq1  GAATTCTCTGAATTCTTATTAACTGAAATTTCTAGCACCTCACGTTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAATTCTTATTAACTGAAATTTCTAGCACCTCACGTTGACT  50

seq1  GTGATATGAAAATTAAGCTAAAATTTTCTCCATGAGATTGTCCATAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATGAAAATTAAGCTAAAATTTTCTCCATGAGATTGTCCATAAGAT  100

seq1  TGGTCAAAATGAGGGGAGACGTAGAAGTAGAAAGAAGGAAGAAGGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAAATGAGGGGAGACGTAGAAGTAGAAAGAAGGAAGAAGGTGTAT  150

seq1  GTGAGATGAACTGTTGGTTAAGTCAGAAAAAGTCGGGTATACAAAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGAACTGTTGGTTAAGTCAGAAAAAGTCGGGTATACAAAGAGAG  200

seq1  AGAGAGAAAGAGAGAGAGAGAGAGATTAAAGGAGGGAGCAAGAGGGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGAGAGAGAGAGAGAGATTAAAGGAGGGAGCAAGAGGGAGGA  250

seq1  AGGAAAAGAGGGAGAGACAGAGAGAAAAAATGCACACACAGAGACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAGGGAGAGACAGAGAGAAAAAATGCACACACAGAGACAGATA  300

seq1  CAGAGAGTATAATATACTTTATTTCAGGAAGATTCATCTCCTAAACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTATAATATACTTTATTTCAGGAAGATTCATCTCCTAAACTCTC  350

seq1  TATAACATCCCAAGAGCAGCTCCACCATCTGGAGATCAAGCTTTCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATCCCAAGAGCAGCTCCACCATCTGGAGATCAAGCTTTCAAACA  400

seq1  CAAGGCTGCAGGAGACACTTTATACTCTAACTCTAAAAGACTCCAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCAGGAGACACTTTATACTCTAACTCTAAAAGACTCCAAATGC  450

seq1  TAACTTTCATTTAAACAGACAGGCACAGGATCTAATTATCACTCCTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCATTTAAACAGACAGGCACAGGATCTAATTATCACTCCTTCAA  500

seq1  AAACCCATTCCTGTTTTTTTTTCTTTAAGTTTTACAGTTCACTGGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATTCCTGTTTTTTTTTCTTTAAGTTTTACAGTTCACTGGAGAGT  550

seq1  TTAGAATGTTTATTATTTAAGGACATCATAAAAGAAAAATAAATGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTTTATTATTTAAGGACATCATAAAAGAAAAATAAATGAATAT  600

seq1  ATATATATATATATATATATATATATATATATATATATATATATATAT--  648
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  650

seq1  ---CACCAAGGTTTTTTTTTTTACTTTATTAAAAAATGATTGGAAAA--T  693
          ||  || | | | | | | |||||| ||||||||| |||||||  |
seq2  ATATACATAGATATATATATAT-CTTTATAAAAAAATGAATGGAAAAATT  699

seq1  TTTTATTTTGTTTCTGTAATAATTTTTCACTGGAAAAATACCA-CCAT-A  741
       |||||||||||||||||||||| ||||| ||||||||||||| |||| |
seq2  ATTTATTTTGTTTCTGTAATAATATTTCAATGGAAAAATACCACCCATAA  749

seq1  ATCAAAT-GGGAAAAATTA-TCTTTA-ACTA-TTAAAGAAAACGT-AGTT  786
      ||||| | ||||||||||| |||||| |||| | | ||| | |||  || 
seq2  ATCAAGTGGGGAAAAATTAGTCTTTAGACTAGTGAGAGAGAGCGTGTGTG  799

seq1  TTTTTTTATAT-TTAAGG-AAGAAAACTTT--GATATACCTACTAATTCA  832
      ||  |  |||| | |||| || ||||||||  ||||||||||||||||||
seq2  TTGATAGATATGTGAAGGAAAAAAAACTTTTGGATATACCTACTAATTCA  849

seq1  AAAT-GTA-CCTAATA-AATAAC-CCAATAAAAT-ACAAT--AAGTAGCT  875
      |||| ||| ||| | | |||||| | |||||||| |||||  | | ||||
seq2  AAATGGTACCCTGAGAGAATAACGCGAATAAAATAACAATAGAGGAAGCT  899

seq1  A-CTTCTAATT-CTGTATT-GTTTATATTTTTCAAACA  910
      | |  |||||| ||||||| ||||||||||||||||||
seq2  ACCGCCTAATTCCTGTATTGGTTTATATTTTTCAAACA  937


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