BAC Information

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BAC

Clone NameB6Ng01-273A11
Chromosome17 (Build37)8 (Build37)
Map Location 35,132,233 - 35,132,58972,950,029 - 72,951,163
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneH2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2
Downstream geneVars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273A11.bB6Ng01-273A11.g
ACCGA074703GA074704
length2601,130
definitionB6Ng01-273A11.b B6Ng01-273A11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,132,233 - 35,132,589)(72,950,029 - 72,951,163)
sequence
caggacagccaagggctacagagagagaaaccctgtctaaaaaagaaaag
aaagaaaaaaagaaagagagagatggcgggggcgggggagggagagaggg
agagagagagagagagagatagagagatagatagagagagagagagagag
agagaatatacacacatatacacactatcaaaaaaaaaaaaaaattaggg
ggtggtgagatggctcagtgggtaagagcacccgactgcttttccgaagg
tctgaagttc
gaattcaaccccactcagagctatctctagctttcccttgaaaactgtcc
ttctgggacaggacagcacacagagtaagggttggcatgaagaccaagct
caggctcaagcaggaagttcaccagcagcagtgtccaagaagacagcgct
tgtagaggctctagggcaggcccaggtcagagccaggcctgaccatgtgc
tttttcaggagttgaggacacctgccaccaaacttgccaccaattcctag
aacccacagaaaggcaggaaagaactgactccacaaacttcctccacatg
agcaccacagtgcagtagcccccgctccccctacaacccccaaaccacag
acacacacaactgtgctaaatgaaaaggcagagtggaagggccatggggc
tctggagaactgttcagagctctcatggagggaggcccagggcctcttct
gaacccttcaacagcctttttgattctttaggtggccaaacaggaagcag
agaaacacacagcgcccagcaggggaagcaagctcacagctcacagctca
caaagcaactgtagggctgagcaatgggacaggcacaaggtagaagatag
ctcccatttgaggaactaaacagaaatacacaggaaagagcatgagtaaa
ggacctggggtcacagggtgagtatgctgtggagtcactccataagcaag
gaggtggtggcagtcagctctggaccacaagagcccaagccacaggaggt
tcacccaatgagacctaatgagccctcagccaggcctctggcagggatga
agcccagttaaatgtagacaaatgggagggaggttcccaggtacagagat
gcctgcccaggaagcaaggctacagagacccgccttcccagggaggcaag
cctctgcaggctctagggtctcagtctctgtcacccacacaggaatttcc
ctgtctctaacagcaatgcctctctctcacacccaggctttaacctgggc
ctcgagctacacccccagagagtcctgaagcccagagctatccctgcttg
ttcttctggaacagtagaatgcacctgctatggactggccaatgcataag
atgaaagacttgtaacaacatatgtagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35132233_35132589
seq2: B6Ng01-273A11.b_44_303 (reverse)

seq1  GAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCA  50
      ||||||  ||||||||||| ||||||||||||||||||||||||||||||
seq2  GAACTTCAGACCTTCGGAAAAGCAGTCGGGTGCTCTTACCCACTGAGCCA  50

seq1  TCTCACTAGCCCCT-CTTTCTAGTTTTTTGTGTAAGGCTTATGTCTTATC  99
      |||||| | |||||  ||| |  |||||| ||  ||   | ||| |    
seq2  TCTCACCACCCCCTAATTTTTTTTTTTTTTTGATAG---TGTGTAT----  93

seq1  AATCTGCTTTTCACAATTTTACTTTTCTCTGTATTTCTAAAGTCTTTCTT  149
       || ||           | || | |||||| | | ||     ||| ||| 
seq2  -ATGTG-----------TGTA-TATTCTCTCTCTCTC-----TCTCTCT-  124

seq1  TTCGAGGGCACAGAAAGCTACTCTGGCTATTAAGACTCAAATATGAGCCA  199
                          ||||  ||||     |||            
seq2  --------------------CTCTATCTAT-----CTC------------  137

seq1  TATTGAGCCAATATCAATAAAATCATCTAT-TCTTTTTTTCTTTCTCTAA  248
                               ||||| ||| | | ||| |||||  
seq2  -------------------------TCTATCTCTCTCTCTCTCTCTCT--  160

seq1  AGCCATCATGATATTTCCCATTCTTATG---CAGCTTATTCTTTTTTGGT  295
        || ||      | ||||  ||    |   | ||    ||| | ||  |
seq2  --CCCTC------TCTCCC--TCCCCCGCCCCCGCCATCTCTCTCTTTCT  200

seq1  TTTTTGGTTGGTTGGTTTGGTTTTTCGAGACAGGGTT--TCTCTGTGTAG  343
      ||||   ||  ||  |||  |||||  ||||||||||  ||||| |||||
seq2  TTTT---TTCTTTCTTTTCTTTTTT--AGACAGGGTTTCTCTCTCTGTAG  245

seq1  CCC-TGGCTGTCCTG  357
      ||| |||||||||||
seq2  CCCTTGGCTGTCCTG  260

seq1: chr8_72950029_72951163
seq2: B6Ng01-273A11.g_64_1193

seq1  GAATTCAACCCCACTCAGAGCTATCTCTAGCTTTCCCTTGAAAACTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCCACTCAGAGCTATCTCTAGCTTTCCCTTGAAAACTGTCC  50

seq1  TTCTGGGACAGGACAGCACACAGAGTAAGGGTTGGCATGAAGACCAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGACAGGACAGCACACAGAGTAAGGGTTGGCATGAAGACCAAGCT  100

seq1  CAGGCTCAAGCAGGAAGTTCACCAGCAGCAGTGTCCAAGAAGACAGCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAAGCAGGAAGTTCACCAGCAGCAGTGTCCAAGAAGACAGCGCT  150

seq1  TGTAGAGGCTCTAGGGCAGGCCCAGGTCAGAGCCAGGCCTGACCATGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGCTCTAGGGCAGGCCCAGGTCAGAGCCAGGCCTGACCATGTGC  200

seq1  TTTTTCAGGAGTTGAGGACACCTGCCACCAAACTTGCCACCAATTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGAGTTGAGGACACCTGCCACCAAACTTGCCACCAATTCCTAG  250

seq1  AACCCACAGAAAGGCAGGAAAGAACTGACTCCACAAACTTCCTCCACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAGAAAGGCAGGAAAGAACTGACTCCACAAACTTCCTCCACATG  300

seq1  AGCACCACAGTGCAGTAGCCCCCGCTCCCCCTACAACCCCCAAACCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACAGTGCAGTAGCCCCCGCTCCCCCTACAACCCCCAAACCACAG  350

seq1  ACACACACAACTGTGCTAAATGAAAAGGCAGAGTGGAAGGGCCATGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAACTGTGCTAAATGAAAAGGCAGAGTGGAAGGGCCATGGGGC  400

seq1  TCTGGAGAACTGTTCAGAGCTCTCATGGAGGGAGGCCCAGGGCCTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAACTGTTCAGAGCTCTCATGGAGGGAGGCCCAGGGCCTCTTCT  450

seq1  GAACCCTTCAACAGCCTTTTTGATTCTTTAGGTGGCCAAACAGGAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTTCAACAGCCTTTTTGATTCTTTAGGTGGCCAAACAGGAAGCAG  500

seq1  AGAAACACACAGCGCCCAGCAGGGGAAGCAAGCTCACAGCTCACAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACACAGCGCCCAGCAGGGGAAGCAAGCTCACAGCTCACAGCTCA  550

seq1  CAAAGCAACTGTAGGGCTGAGCAATGGGACAGGCACAAGGTAGAAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACTGTAGGGCTGAGCAATGGGACAGGCACAAGGTAGAAGATAG  600

seq1  CTCCCATTTGAGGAACTAAACAGAAATACACAGGAAAGAGCATGAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTTGAGGAACTAAACAGAAATACACAGGAAAGAGCATGAGTAAA  650

seq1  GGACCTGGGGTCACAGGGTGAGTATGCTGTGGAGTCACTCCATAAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGGGTCACAGGGTGAGTATGCTGTGGAGTCACTCCATAAGCAAG  700

seq1  GAGGTGGTGGCAGTCAGCTCTGGACCACAAGAGCCCAAGCCACAGGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTGGCAGTCAGCTCTGGACCACAAGAGCCCAAGCCACAGGAGGT  750

seq1  TCACCCAATGAGACCTAATGAGCCCTCAGCCAGGCCTCTGGCAGGGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAATGAGACCTAATGAGCCCTCAGCCAGGCCTCTGGCAGGGATGA  800

seq1  AGCCCAGTTAAATGTAGACAAATGGGAGGGAGGTTCCCAGGTACAGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTTAAATGTAGACAAATGGGAGGGAGGTTCCCAGGTACAGAGAT  850

seq1  GCCTGCCCAGGGAAGCAAGGCTACAGAGACCCGCCTTCCCAGGGAGGCAA  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCA-GGAAGCAAGGCTACAGAGACCCGCCTTCCCAGGGAGGCAA  899

seq1  GCCTCTGCAGGCTCTAGGGTCTCAGTCTCTGTCACCCACACAGGAA-TTC  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTCTGCAGGCTCTAGGGTCTCAGTCTCTGTCACCCACACAGGAATTTC  949

seq1  CCTGTCCTCTAACAGCAATGCCTCTCTCTCCACACCCAGGCTTTAACCTG  999
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGT-CTCTAACAGCAATGCCTCTCTCT-CACACCCAGGCTTTAACCTG  997

seq1  GGCCTCGAGGCTACA-CCCCAGAGAGTCCTGAAGGCCCAGAGCTATCCCT  1048
      |||||||| |||||| ||||||||||||||||| ||||||||||||||||
seq2  GGCCTCGA-GCTACACCCCCAGAGAGTCCTGAA-GCCCAGAGCTATCCCT  1045

seq1  GCTTGTTC-TCTGGGACAGTAGATGGCACCTGCTATGGACTGGCCATTGC  1097
      |||||||| ||||| ||||||||  ||||||||||||||||||||| || 
seq2  GCTTGTTCTTCTGGAACAGTAGAATGCACCTGCTATGGACTGGCCAATG-  1094

seq1  CATAAGATGAAGGACTTGTACCAACATATGTTAAGTGT  1135
      ||||||||||| |||||||| ||||||||||  |||||
seq2  CATAAGATGAAAGACTTGTAACAACATATGT--AGTGT  1130