BAC Information

Click to search

BAC

Clone NameB6Ng01-273E24
Chromosome8 (Build37)
Map Location 89,394,983 - 89,536,846
singlet/doubletdoublet
Overlap geneBC004022, LOC666960
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E24.bB6Ng01-273E24.g
ACCGA074919GA074920
length1,1991,061
definitionB6Ng01-273E24.b B6Ng01-273E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,394,983 - 89,396,160)(89,535,782 - 89,536,846)
sequence
gaattcacgctcactcccactcagcttgctttctcttttcacagtacagg
acccaacccaggaaactgctacctaccacacagttctaggctggattttc
ttacaccaacaaatgaaattaagtcagcttccccacagaccaacctgatg
cacacgatgcctcactgggcttctcttaccaactgattctagactgtgtc
aacgctgacaatgaaaacgatccaccacaaatccttcctcggtacagaaa
aaaaaattcacattttctaacacatataaaatgatactaaatccatgcaa
caggaatcaggatgtcaaaagaaaggaaataaaggaaatcagagtgaaga
gtgctagtaagataagaatatgaagcgaagcatggtgccctaaggctaga
atttcaccactaagaagactggagcaggaggaatggcctaagtttaaggc
cagcctcaggtacagaatgagatccagtctcaaaaaacaccaaatcaatt
ttttaaaaaaaggagaagtggaagtgaaggagggctggagagatggctca
gtggttaagagcatgtcctgctcttgcagaaggcccagggttggttccca
gcacccatgctgagagactcacaaccaccatcttaattccagttccaggg
gtccggacaccagggttaaaggcaaatagctgacatgcccagcctctcct
aattattttaagtttcaaatatactttatttacataaatcaaagaatcag
aaacgcatctcaagaacaattaacaagttgggcatagtgaggctggcctt
ttagttccagcactcgggaggcacaggcagtggagctcagacccagcctg
gtctacacagcaagtgtcaagccagccagggctacagtgagagcctgtct
caaaaaggaaaaaaaggcaataaaaaagatgaagacaaggggtcttttta
taagtagatttcctcaccatgatcagcaaacaaatttaacataattccag
aaaaaaagatttgggagaaacatgcagaaaacagtccagattattattaa
ctgtaatttgcttaaagcatgaaagaaaccttgctttgttcattcacttt
gttcatccaactgtaacattggaggcaaccaagcatggtgcccggtacct
aggtgagcaaaaggtgaaaaggtgggatttcctgatttttccttagaga

gaattccaaagtagatcagtcacatgattccaagttgtcccacctttgtg
tgtatagtcaaggaaatcaaagcaatataagctgaggagctgctgcatgc
tcaaagtaactgtgagatcactcacatggtttgatatggaaaagatgaga
tgcccaacaacagatgactgtctaaataaagtgtgatataaacatacaat
gaagtgttattcagccataaagaagaatgaaaccctgtcatctgccccca
aataaataaaaaaggagtgcgtatgttaagtggaaggcacagaagacaag
tacctcatgtttccctgtgcataagctggaaaatgtggagctgaaagcag
aaccatgacaactatggtggggaggggacatcaacaggacacgctgcatg
catgtgtgtcaaggctacactaaatcccacttaataaatgatgactacat
gctcataaaaataaaagagaacacataagtaacaagtaagtaaatgaaaa
gatacagagaggaagtaagattaaaatcacagtgaagtaagctatacatt
aaccagaatagcttagtgtgtggatggatgcaggtatgtgtgcaccaagt
gtcatacactgcttcacccaatagctgtagactatacattattctcaagt
ctgtatgggcatctcagcaagacacgtggcatcctaagccaggaagttca
ctttaaacaatttaaagtaacagagatcatatgatgtctagtttcagacc
acagtagaattaaaccagaaatttataatgaaaggattcctggaaaatcc
taaaatgctagaaaattaaacaacaccctccccattagtaagcccaaaca
atctcaaaataaaatttaaaatattgtaactagatgaagatacaacccat
ccaaagtcatgctacacaagtgatgttgaggggaaacctggagcagagga
tgctagagcggagatgctagagtggaagatgctagagcagagttgctgcc
agagagagaggagatttctaaaaggcagcactgtaacctaactcagcaaa
caacaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89394983_89396160
seq2: B6Ng01-273E24.b_45_1243

seq1  GAATTCACGCTCACTCCCACTCAGCTTGCTTTCTCTTTTCACAGTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCTCACTCCCACTCAGCTTGCTTTCTCTTTTCACAGTACAGG  50

seq1  ACCCAACCCAGGAAACTGCTACCTACCACACAGTTCTAGGCTGGATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCCAGGAAACTGCTACCTACCACACAGTTCTAGGCTGGATTTTC  100

seq1  TTACACCAACAAATGAAATTAAGTCAGCTTCCCCACAGACCAACCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAACAAATGAAATTAAGTCAGCTTCCCCACAGACCAACCTGATG  150

seq1  CACACGATGCCTCACTGGGCTTCTCTTACCAACTGATTCTAGACTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGATGCCTCACTGGGCTTCTCTTACCAACTGATTCTAGACTGTGTC  200

seq1  AACGCTGACAATGAAAACGATCCACCACAAATCCTTCCTCGGTACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGACAATGAAAACGATCCACCACAAATCCTTCCTCGGTACAGAAA  250

seq1  AAAAAATTCACATTTTCTAACACATATAAAATGATACTAAATCCATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCACATTTTCTAACACATATAAAATGATACTAAATCCATGCAA  300

seq1  CAGGAATCAGGATGTCAAAAGAAAGGAAATAAAGGAAATCAGAGTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCAGGATGTCAAAAGAAAGGAAATAAAGGAAATCAGAGTGAAGA  350

seq1  GTGCTAGTAAGATAAGAATATGAAGCGAAGCATGGTGCCCTAAGGCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGTAAGATAAGAATATGAAGCGAAGCATGGTGCCCTAAGGCTAGA  400

seq1  ATTTCACCACTAAGAAGACTGGAGCAGGAGGAATGGCCTAAGTTTAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCACTAAGAAGACTGGAGCAGGAGGAATGGCCTAAGTTTAAGGC  450

seq1  CAGCCTCAGGTACAGAATGAGATCCAGTCTCAAAAAACACCAAATCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGGTACAGAATGAGATCCAGTCTCAAAAAACACCAAATCAATT  500

seq1  TTTTAAAAAAAGGAGAAGTGGAAGTGAAGGAGGGCTGGAGAGATGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAAGGAGAAGTGGAAGTGAAGGAGGGCTGGAGAGATGGCTCA  550

seq1  GTGGTTAAGAGCATGTCCTGCTCTTGCAGAAGGCCCAGGGTTGGTTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGCATGTCCTGCTCTTGCAGAAGGCCCAGGGTTGGTTCCCA  600

seq1  GCACCCATGCTGAGAGACTCACAACCACCATCTTAATTCCAGTTCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATGCTGAGAGACTCACAACCACCATCTTAATTCCAGTTCCAGGG  650

seq1  GTCCGGACACCAGGGTTAAAGGCAAATAGCTGACATGCCCAGCCTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGACACCAGGGTTAAAGGCAAATAGCTGACATGCCCAGCCTCTCCT  700

seq1  AATTATTTTAAGTTTCAAATATACTTTATTTACATAAATCAAAGAATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTAAGTTTCAAATATACTTTATTTACATAAATCAAAGAATCAG  750

seq1  AAACGCATCTCAAGAACAATTAACAAGTTGGGCATAGTGAGGCTGGCC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACGCATCTCAAGAACAATTAACAAGTTGGGCATAGTGAGGCTGGCCTT  800

seq1  TTAGTTCCAGCACTCGGGAGGCACAGGCAGTGGAGCTCAGACCCAGCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCAGCACTCGGGAGGCACAGGCAGTGGAGCTCAGACCCAGCCTG  850

seq1  GTCTACACAGCAAGTGTCAAGCCAGCCAGGGCTACAGTGAGAGCCTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACAGCAAGTGTCAAGCCAGCCAGGGCTACAGTGAGAGCCTGTCT  900

seq1  CAAAAAGGAAAAAAAGGCAATAAAAAAGATGAAGACAA-GGGTC-TTTTA  947
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CAAAAAGGAAAAAAAGGCAATAAAAAAGATGAAGACAAGGGGTCTTTTTA  950

seq1  TAGGTAGATTTCCTCACCATGATCAGCAAACAAATTTAACAT-ATTCCAG  996
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAGTAGATTTCCTCACCATGATCAGCAAACAAATTTAACATAATTCCAG  1000

seq1  AAAAAAAGAATTTGGAGAAACATGCAG-AAACAGTCCAGATTA-TATTAA  1044
      ||||||||| || |||||||||||||| ||||||||||||||| ||||||
seq2  AAAAAAAGATTTGGGAGAAACATGCAGAAAACAGTCCAGATTATTATTAA  1050

seq1  CTGTAATTTTGCTTAAAGCATGAAAGAA--CTTGCTTTGTTCATTCAC-T  1091
      |||||| |||||||||||||||||||||  |||||||||||||||||| |
seq2  CTGTAA-TTTGCTTAAAGCATGAAAGAAACCTTGCTTTGTTCATTCACTT  1099

seq1  TGTTCATCC-ACTGT-ACATT-GAGGC-ACCAAGCAT-GTG-CCGGGAAC  1135
      ||||||||| ||||| ||||| ||||| ||||||||| ||| |||| | |
seq2  TGTTCATCCAACTGTAACATTGGAGGCAACCAAGCATGGTGCCCGGTACC  1149

seq1  TAGTGAAGCAAAAGGTGAAA--GTGGG--TTCCTG-TTTTTC--TAGAGA  1178
      |||   ||||||||||||||  |||||  |||||| ||||||  ||||||
seq2  TAGGTGAGCAAAAGGTGAAAAGGTGGGATTTCCTGATTTTTCCTTAGAGA  1199


seq1: chr8_89535782_89536846
seq2: B6Ng01-273E24.g_67_1127 (reverse)

seq1  TTTGTTTGTTTGTTTGCTGAGTTTAGGTTTTACAGTGCTGCTTTTTAGAA  50
      |||||||| |||||||||||| |||||  |||||||||||| ||||||||
seq2  TTTGTTTG-TTGTTTGCTGAG-TTAGG--TTACAGTGCTGCCTTTTAGAA  46

seq1  ATCT-CTCTCTCTCTGGCAGCAACCTCTGCTCTAGCATCTTCCACTCTAG  99
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCTCCTCTCTCTCTGGCAGCAA-CTCTGCTCTAGCATCTTCCACTCTAG  95

seq1  CATCCTCCGCTCTAGCATCCTCTGCTCCAGGTTTCCCCTCCACATCACTT  149
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAT-CTCCGCTCTAGCATCCTCTGCTCCAGGTTTCCCCTCAACATCACTT  144

seq1  GTGTAGCATGACTTTGGATGGGTTGTATCTTCATCTAGTTACAATATTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCATGACTTTGGATGGGTTGTATCTTCATCTAGTTACAATATTTT  194

seq1  AAATTTTATTTTGAGATTGTTT-GGCTTACTAATGGGGAGGGTGTTGTTT  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATTTTATTTTGAGATTGTTTGGGCTTACTAATGGGGAGGGTGTTGTTT  244

seq1  AATTTTCTAGCATTTTAGGATTTTCCAGGAATCCTTTCATTATAAATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTAGCATTTTAGGATTTTCCAGGAATCCTTTCATTATAAATTTC  294

seq1  TGGTTTAATTCTACTGTGGTCTGAAACTAGACATCATATGATCTCTGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATTCTACTGTGGTCTGAAACTAGACATCATATGATCTCTGTTA  344

seq1  CTTTAAATTGTTTAAAGTGAACTTCCTGGCTTAGGATGCCACGTGTCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTGTTTAAAGTGAACTTCCTGGCTTAGGATGCCACGTGTCTTG  394

seq1  CTGAGATGCCCATACAGACTTGAGAATAATGTATAGTCTACAGCTATTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCCCATACAGACTTGAGAATAATGTATAGTCTACAGCTATTGG  444

seq1  GTGAAGCAGTGTATGACACTTGGTGCACACATACCTGCATCCATCCACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCAGTGTATGACACTTGGTGCACACATACCTGCATCCATCCACAC  494

seq1  ACTAAGCTATTCTGGTTAATGTATAGCTTACTTCACTGTGATTTTAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTATTCTGGTTAATGTATAGCTTACTTCACTGTGATTTTAATCT  544

seq1  TACTTCCTCTCTGTATCTTTTCATTTACTTACTTGTTACTTATGTGTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTCTCTGTATCTTTTCATTTACTTACTTGTTACTTATGTGTTCT  594

seq1  CTTTTATTTTTATGAGCATGTAGTCATCATTTATTAAGTGGGATTTAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTATGAGCATGTAGTCATCATTTATTAAGTGGGATTTAGTG  644

seq1  TAGCCTTGACACACATGCATGCAGCGTGTCCTGTTGATGTCCCCTCCCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGACACACATGCATGCAGCGTGTCCTGTTGATGTCCCCTCCCCA  694

seq1  CCATAGTTGTCATGGTTCTGCTTTCAGCTCCACATTTTCCAGCTTATGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTGTCATGGTTCTGCTTTCAGCTCCACATTTTCCAGCTTATGCA  744

seq1  CAGGGAAACATGAGGTACTTGTCTTCTGTGCCTTCCACTTAACATACGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAACATGAGGTACTTGTCTTCTGTGCCTTCCACTTAACATACGCA  794

seq1  CTCCTTTTTTATTTATTTGGGGGCAGATGACAGGGTTTCATTCTTCTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTTATTTATTTGGGGGCAGATGACAGGGTTTCATTCTTCTTTA  844

seq1  TGGCTGAATAACACTTCATTGTATGTTTATATCACACTTTATTTAGACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATAACACTTCATTGTATGTTTATATCACACTTTATTTAGACAG  894

seq1  TCATCTGTTGTTGGGCATCTCATCTTTTCCATATCAAACCATGTGAGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTGTTGGGCATCTCATCTTTTCCATATCAAACCATGTGAGTGA  944

seq1  TCTCACAGTTACTTTGAGCATGCAGCAGCTCCTCAGCTTATATTGCTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTTACTTTGAGCATGCAGCAGCTCCTCAGCTTATATTGCTTTG  994

seq1  ATTTCCTTGACTATACACACAAAGGTGGGACAACTTGGAATCATGTGACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTGACTATACACACAAAGGTGGGACAACTTGGAATCATGTGACT  1044

seq1  GATCTACTTTGGAATTC  1065
      |||||||||||||||||
seq2  GATCTACTTTGGAATTC  1061


| Home | SequenceCutter | Blast | Download |