BAC Information

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BAC

Clone NameB6Ng01-274F09
Chromosome8 (Build37)
Map Location 108,355,498 - 108,508,585
singlet/doubletdoublet
Overlap geneTsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10
Downstream geneDpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274F09.bB6Ng01-274F09.g
ACCGA075662GA075663
length1,018275
definitionB6Ng01-274F09.b B6Ng01-274F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,507,572 - 108,508,585)(108,355,498 - 108,355,772)
sequence
gaattccttcgatccctaagaagggaatgtgactggatggtgaataactt
tcattcttgtttggacaaaggccagactgccaggacatataatagtcatg
ggcctccaatggttggactcccttacatgtggtattcgccagaccccagg
aagttcctctctaccaggtactaactacttaggcatccattctatcctgc
tcctgggccctgagcagacatcaataacaactgcaataattacaggtaat
attaagagctaatactgggctgttgatgtagctcagctggtagagagggc
ttgcccagcatgcaggaagccctggatttgatcccctgcccccaacacta
catacaaccagtcttggagagtcctgcgactccagcacttgtgaggtaga
gtcaggaagaatgggcatttcaagatataaccagcctgtggtacatgggc
tcatgactcccaagaaaaaatgaagagttggggatgaggggggatagctt
gctcagtcagtgaaacccttgccatacaggcctgaggacctgagttcaat
cttccaaactcaaagtttaaaaagcccaggagctagagatgctcagtggt
taggaacactggttgcaccaggctctgcactggcagagcagccatggttc
tgtctacattggtggtcagtggagggcattgctgaagagggctcagcctt
ccaaggcagctaccagcttgtcctctctgtggctaccatttgtcaccaag
cttcaatttcaggcgaggaatttttgcaccgggacagcctagatcttgat
ctgactcttcctgaactcgatgtctcttaggagccccgctggacgatgac
ttctcctcttgctcagcctttgcaggtgtgggaagcggcgcatctccgta
gacacggtagcctccaatcaggcagtatgtctctccatgccaggccatct
gggcttgcgcatgcccttttgtagaggacgtggtagtattcgggggtaag
aagggagctggtgggaag
tgcagaacagagtgtcccaactgggttcacatgtttgagtaatactagtc
ttactttttatttgttttttattttctttaggtttttggaaacaaggttt
ctccttgtagctctggttgtcctggaattctctctgtagaccaagctggc
ctagaactcagagatctacctgcctctgcatccagagtgctgggattaaa
ggcgtgtgccactagcacctggctctagtctcacttttttttctttgaaa
gatttatttaagctgggcatggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108507572_108508585
seq2: B6Ng01-274F09.b_46_1063 (reverse)

seq1  CCTCCCA-CAGCT-CCTTCTT-CCCCCGAATACTACCACGTCCTCTAC-A  46
      | ||||| ||||| ||||||| |||||||||||||||||||||||||| |
seq2  CTTCCCACCAGCTCCCTTCTTACCCCCGAATACTACCACGTCCTCTACAA  50

seq1  AAGGGCATGCGCAAGCCCAGATGGCCTGGCATGGAGAGACATACTGCCTG  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATGCGCAAGCCCAGATGGCCTGGCATGGAGAGACATACTGCCTG  100

seq1  ATTGGAGGCTACCGTGTCTACGGAGATGCGCCGCTTCCCACACCTGCAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGCTACCGTGTCTACGGAGATGCGCCGCTTCCCACACCTGCAAA  150

seq1  GGCTGAGCAAGAGGAGAAGTCATCGTCCAGCGGGGCTCCTAAGAGACATC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCAAGAGGAGAAGTCATCGTCCAGCGGGGCTCCTAAGAGACATC  200

seq1  GAGTTCAGGAAGAGTCAGATCAAGATCTAGGCTGTCCCGGTGCAAAAATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGGAAGAGTCAGATCAAGATCTAGGCTGTCCCGGTGCAAAAATT  250

seq1  CCTCGCCTGAAATTGAAGCTTGGTGACAAATGGTAGCCACAGAGAGGACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCTGAAATTGAAGCTTGGTGACAAATGGTAGCCACAGAGAGGACA  300

seq1  AGCTGGTAGCTGCCTTGGAAGGCTGAGCCCTCTTCAGCAATGCCCTCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTAGCTGCCTTGGAAGGCTGAGCCCTCTTCAGCAATGCCCTCCAC  350

seq1  TGACCACCAATGTAGACAGAACCATGGCTGCTCTGCCAGTGCAGAGCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCAATGTAGACAGAACCATGGCTGCTCTGCCAGTGCAGAGCCTG  400

seq1  GTGCAACCAGTGTTCCTAACCACTGAGCATCTCTAGCTCCTGGGCTTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACCAGTGTTCCTAACCACTGAGCATCTCTAGCTCCTGGGCTTTTT  450

seq1  AAACTTTGAGTTTGGAAGATTGAACTCAGGTCCTCAGGCCTGTATGGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGAGTTTGGAAGATTGAACTCAGGTCCTCAGGCCTGTATGGCAA  500

seq1  GGGTTTCACTGACTGAGCAAGCTATCCCCCCTCATCCCCAACTCTTCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCACTGACTGAGCAAGCTATCCCCCCTCATCCCCAACTCTTCATT  550

seq1  TTTTCTTGGGAGTCATGAGCCCATGTACCACAGGCTGGTTATATCTTGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGGGAGTCATGAGCCCATGTACCACAGGCTGGTTATATCTTGAA  600

seq1  ATGCCCATTCTTCCTGACTCTACCTCACAAGTGCTGGAGTCGCAGGACTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATTCTTCCTGACTCTACCTCACAAGTGCTGGAGTCGCAGGACTC  650

seq1  TCCAAGACTGGTTGTATGTAGTGTTGGGGGCAGGGGATCAAATCCAGGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACTGGTTGTATGTAGTGTTGGGGGCAGGGGATCAAATCCAGGGC  700

seq1  TTCCTGCATGCTGGGCAAGCCCTCTCTACCAGCTGAGCTACATCAACAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCATGCTGGGCAAGCCCTCTCTACCAGCTGAGCTACATCAACAGC  750

seq1  CCAGTATTAGCTCTTAATATTACCTGTAATTATTGCAGTTGTTATTGATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTAGCTCTTAATATTACCTGTAATTATTGCAGTTGTTATTGATG  800

seq1  TCTGCTCAGGGCCCAGGAGCAGGATAGAATGGATGCCTAAGTAGTTAGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCAGGGCCCAGGAGCAGGATAGAATGGATGCCTAAGTAGTTAGTA  850

seq1  CCTGGTAGAGAGGAACTTCCTGGGGTCTGGCGAATACCACATGTAAGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGAGAGGAACTTCCTGGGGTCTGGCGAATACCACATGTAAGGGA  900

seq1  GTCCAACCATTGGAGGCCCATGACTATTATATGTCCTGGCAGTCTGGCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACCATTGGAGGCCCATGACTATTATATGTCCTGGCAGTCTGGCCT  950

seq1  TTGTCCAAACAAGAATGAAAGTTATTCACCATCCAGTCACATTCCCTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAAACAAGAATGAAAGTTATTCACCATCCAGTCACATTCCCTTCT  1000

seq1  TAGGGATCGAAGGAATTC  1014
      ||||||||||||||||||
seq2  TAGGGATCGAAGGAATTC  1018

seq1: chr8_108355498_108355772
seq2: B6Ng01-274F09.g_72_346

seq1  TGCAGAACAGAGTGTCCCAACTGGGTTCACATGTTTGAGTAATACTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACAGAGTGTCCCAACTGGGTTCACATGTTTGAGTAATACTAGTC  50

seq1  TTACTTTTTATTTGTTTTTTATTTTCTTTAGGTTTTTGGAAACAAGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTATTTGTTTTTTATTTTCTTTAGGTTTTTGGAAACAAGGTTT  100

seq1  CTCCTTGTAGCTCTGGTTGTCCTGGAATTCTCTCTGTAGACCAAGCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTAGCTCTGGTTGTCCTGGAATTCTCTCTGTAGACCAAGCTGGC  150

seq1  CTAGAACTCAGAGATCTACCTGCCTCTGCATCCAGAGTGCTGGGATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCAGAGATCTACCTGCCTCTGCATCCAGAGTGCTGGGATTAAA  200

seq1  GGCGTGTGCCACTAGCACCTGGCTCTAGTCTCACTTTTTTTTCTTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGCCACTAGCACCTGGCTCTAGTCTCACTTTTTTTTCTTTGAAA  250

seq1  GATTTATTTAAGCTGGGCATGGTGG  275
      |||||||||||||||||||||||||
seq2  GATTTATTTAAGCTGGGCATGGTGG  275