BAC Information

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BAC

Clone NameB6Ng01-274L13
Chromosome8 (Build37)
Map Location 55,454,262 - 55,606,234
singlet/doubletdoublet
Overlap geneSpcs3
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneAsb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274L13.bB6Ng01-274L13.g
ACCGA075950GA075951
length6281,151
definitionB6Ng01-274L13.b B6Ng01-274L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,454,262 - 55,454,889)(55,605,128 - 55,606,234)
sequence
gaattcttgaataacccagacgtatttataagactccagatctgaccctg
agttactcaagacttcagagtttaggacctttaaattgcatgattagaca
atacttcttttttttcctttattattattattattagtagtagtagtagt
agtagtaatagtagtagtagtttttattaattattttatttatatacatc
ccaaatgttgtccctctcctggaccaccccccccactcaaagatttctcc
cccaatcacctctgagagggtgccctgggcatttcccctctttgggacat
ccagtctctacaagattaggtacatcctttctgtaggccactgaggccag
acaaggcagtcctatgctacatgtgtgcctgaaacatcagaccagcacat
ttggctggtgacttagtgtctgggagtttccagggatccaggttagttga
catagttagtcttcctatagggttgacattcccttcagttccttcaacct
ttcctctacctcttccaaagcagtccctaacctcagtccaatgcttggtt
atgtatatctgcatctgtcttagcttctattagaacctctcaaaggatag
ccatgctaggctttgtctgcaagcacaa
gaattcctttgctgggaattgttttacagctcttcagtggtctttctagc
cagttattcctgtgaagaattggactttgaggagctaaagctttgaatgg
gggctggtgcaggggcctgggagtggagagtctgctttcagatactttaa
cctcggagctgtgacctttgattgtagcaaacatcgatttcaaaagcttc
ttttgctttcagtcacaagcctgcgtaccttactgcgagactgccaatgc
ttcaaagatgtatgtttgaaaaagttctttcatagtttttatgaaatttg
ggaagttgtttacttaaacaaatgcacaagaaaataattcataaaaatac
tgaatatatatgtgcaaaatttttcttagctacaataaatgttcaacatt
tttctaataaagattttttttctgagtaaaaatatgcattttaaagactt
ccaggtttatgtgtttttgtgaagctgctaaatcaaaaagaaaaacagta
gtgcacttgagggatggtaaaacttttatcttctagaaaaaaatgtagaa
gactgcacttgaggtttgaggaaggagtgtgcagtggggctttaggggtt
cattcactctgctacccagatgttcccagagtttgtgtcctcaaagggca
ggctgtcagttgtgcttgtatcttgtccagtactcagcacaccgtcttgc
agttgataggcgggtgcccaataaatgacaaagtgcttgtgtctaatgtg
accaggacatagattaccctgtacgctatcccctttgtaaatactgcttt
ttattttttttctctctcacactcatgatttctcctcccttctcttcaag
ctctgttgggattatccaataaaagtaaatgggggggtgttgcccccggg
ggtcttgtccactaaccccttgtcccaggttttcatagtaggaggaccct
acctgataatgactttgttggacaagggttaattaaaggaaacagcccaa
aagccccaaaagaagacctcaaggtaaaatacctccacgaatccaatgcc
aaggcaattgccttctgaagaaatgaattctttgcctgtatatgatttct
tgaaagccagaaagtaatttcttggagcctcaggttcttgggccaatatt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55454262_55454889
seq2: B6Ng01-274L13.b_40_667

seq1  GAATTCTTGAATAACCCAGACGTATTTATAAGACTCCAGATCTGACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATAACCCAGACGTATTTATAAGACTCCAGATCTGACCCTG  50

seq1  AGTTACTCAAGACTTCAGAGTTTAGGACCTTTAAATTGCATGATTAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCAAGACTTCAGAGTTTAGGACCTTTAAATTGCATGATTAGACA  100

seq1  ATACTTCTTTTTTTTCCTTTATTATTATTATTATTAGTAGTAGTAGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTTTTTTTTCCTTTATTATTATTATTATTAGTAGTAGTAGTAGT  150

seq1  AGTAGTAATAGTAGTAGTAGTTTTTATTAATTATTTTATTTATATACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAATAGTAGTAGTAGTTTTTATTAATTATTTTATTTATATACATC  200

seq1  CCAAATGTTGTCCCTCTCCTGGACCACCCCCCCCACTCAAAGATTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTGTCCCTCTCCTGGACCACCCCCCCCACTCAAAGATTTCTCC  250

seq1  CCCAATCACCTCTGAGAGGGTGCCCTGGGCATTTCCCCTCTTTGGGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCACCTCTGAGAGGGTGCCCTGGGCATTTCCCCTCTTTGGGACAT  300

seq1  CCAGTCTCTACAAGATTAGGTACATCCTTTCTGTAGGCCACTGAGGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTACAAGATTAGGTACATCCTTTCTGTAGGCCACTGAGGCCAG  350

seq1  ACAAGGCAGTCCTATGCTACATGTGTGCCTGAAACATCAGACCAGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAGTCCTATGCTACATGTGTGCCTGAAACATCAGACCAGCACAT  400

seq1  TTGGCTGGTGACTTAGTGTCTGGGAGTTTCCAGGGATCCAGGTTAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGTGACTTAGTGTCTGGGAGTTTCCAGGGATCCAGGTTAGTTGA  450

seq1  CATAGTTAGTCTTCCTATAGGGTTGACATTCCCTTCAGTTCCTTCAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAGTCTTCCTATAGGGTTGACATTCCCTTCAGTTCCTTCAACCT  500

seq1  TTCCTCTACCTCTTCCAAAGCAGTCCCTAACCTCAGTCCAATGCTTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTACCTCTTCCAAAGCAGTCCCTAACCTCAGTCCAATGCTTGGTT  550

seq1  ATGTATATCTGCATCTGTCTTAGCTTCTATTAGAACCTCTCAAAGGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATCTGCATCTGTCTTAGCTTCTATTAGAACCTCTCAAAGGATAG  600

seq1  CCATGCTAGGCTTTGTCTGCAAGCACAA  628
      ||||||||||||||||||||||||||||
seq2  CCATGCTAGGCTTTGTCTGCAAGCACAA  628

seq1: chr8_55605128_55606234
seq2: B6Ng01-274L13.g_68_1218 (reverse)

seq1  TAATAT--GCCC-AGAACCTGAGGCTC--AGGAAATACTCT-GGGCTTTC  44
      ||||||  |||| ||||||||||||||  || || |||| |  |||||||
seq2  TAATATTGGCCCAAGAACCTGAGGCTCCAAGAAATTACTTTCTGGCTTTC  50

seq1  AAAGAA--CTATACA-GCAA--GATTCATTTCTTCAGA--GCAAT--GCT  85
      ||  ||   |||||| ||||   |||||||||||||||  |||||   ||
seq2  AAGAAATCATATACAGGCAAAGAATTCATTTCTTCAGAAGGCAATTGCCT  100

seq1  TGGCA-TGGA-TCGTG--AGTATTTTA-CTTGAG----TCTCTTTGGGC-  125
      ||||| |||| |||||   |||||||| ||||||    ||| || |||| 
seq2  TGGCATTGGATTCGTGGAGGTATTTTACCTTGAGGTCTTCTTTTGGGGCT  150

seq1  TTTGGGCTGTTTCC-TTAATT-ACCCTTGTC--AC-AAGTCATTATCA-G  169
      |||||||||||||| |||||| |||||||||  || |||||||||||| |
seq2  TTTGGGCTGTTTCCTTTAATTAACCCTTGTCCAACAAAGTCATTATCAGG  200

seq1  TA-GGTCCTCTTACTATGAAAACCTGGGACA---GGGTAGT-GAC-AGAC  213
      || ||||||| ||||||||||||||||||||   || |||| ||| ||||
seq2  TAGGGTCCTCCTACTATGAAAACCTGGGACAAGGGGTTAGTGGACAAGAC  250

seq1  CCC--GGGGCAACA-CCCCCCATTTACTTTTATTGGATAAT-CCAACAGA  259
      |||  ||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CCCCGGGGGCAACACCCCCCCATTTACTTTTATTGGATAATCCCAACAGA  300

seq1  GCTTGAAGAGAA-GGAGGAGAAATCATGAGTGTGAGAGAGAAAAAAA--T  306
      |||||||||||| ||||||||||||||||||||||||||||||||||   
seq2  GCTTGAAGAGAAGGGAGGAGAAATCATGAGTGTGAGAGAGAAAAAAAATA  350

seq1  AAAAGCAGTATTTACAAAGGGGATAGCGTACAGGGTAATCTATGTCCTGG  356
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTATTTACAAAGGGGATAGCGTACAGGGTAATCTATGTCCTGG  400

seq1  TCACATTAGACACAAGCACTTTGTCATTTATTGGGCACCCGCCTATCAAC  406
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAGACACAAGCACTTTGTCATTTATTGGGCACCCGCCTATCAAC  450

seq1  TGCAAGACGGTGTGCTGAGTACTGGACAAGATACAAGCACAACTGACAGC  456
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACGGTGTGCTGAGTACTGGACAAGATACAAGCACAACTGACAGC  500

seq1  CTGCCCTTTGAGGACACAAACTCTGGGAACATCTGGGTAGCAGAGTGAAT  506
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTTGAGGACACAAACTCTGGGAACATCTGGGTAGCAGAGTGAAT  550

seq1  GAACCCCTAAAGCCCCACTGCACACTCCTTCCTCAAACCTCAAGTGCAGT  556
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTAAAGCCCCACTGCACACTCCTTCCTCAAACCTCAAGTGCAGT  600

seq1  CTTCTACATTTTTTTCTAGAAGATAAAAGTTTTACCATCCCTCAAGTGCA  606
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACATTTTTTTCTAGAAGATAAAAGTTTTACCATCCCTCAAGTGCA  650

seq1  CTACTGTTTTTCTTTTTGATTTAGCAGCTTCACAAAAACACATAAACCTG  656
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTTTCTTTTTGATTTAGCAGCTTCACAAAAACACATAAACCTG  700

seq1  GAAGTCTTTAAAATGCATATTTTTACTCAGAAAAAAAATCTTTATTAGAA  706
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTAAAATGCATATTTTTACTCAGAAAAAAAATCTTTATTAGAA  750

seq1  AAATGTTGAACATTTATTGTAGCTAAGAAAAATTTTGCACATATATATTC  756
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGAACATTTATTGTAGCTAAGAAAAATTTTGCACATATATATTC  800

seq1  AGTATTTTTATGAATTATTTTCTTGTGCATTTGTTTAAGTAAACAACTTC  806
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTATGAATTATTTTCTTGTGCATTTGTTTAAGTAAACAACTTC  850

seq1  CCAAATTTCATAAAAACTATGAAAGAACTTTTTCAAACATACATCTTTGA  856
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTCATAAAAACTATGAAAGAACTTTTTCAAACATACATCTTTGA  900

seq1  AGCATTGGCAGTCTCGCAGTAAGGTACGCAGGCTTGTGACTGAAAGCAAA  906
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGCAGTCTCGCAGTAAGGTACGCAGGCTTGTGACTGAAAGCAAA  950

seq1  AGAAGCTTTTGAAATCGATGTTTGCTACAATCAAAGGTCACAGCTCCGAG  956
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTTGAAATCGATGTTTGCTACAATCAAAGGTCACAGCTCCGAG  1000

seq1  GTTAAAGTATCTGAAAGCAGACTCTCCACTCCCAGGCCCCTGCACCAGCC  1006
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTATCTGAAAGCAGACTCTCCACTCCCAGGCCCCTGCACCAGCC  1050

seq1  CCCATTCAAAGCTTTAGCTCCTCAAAGTCCAATTCTTCACAGGAATAACT  1056
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAAAGCTTTAGCTCCTCAAAGTCCAATTCTTCACAGGAATAACT  1100

seq1  GGCTAGAAAGACCACTGAAGAGCTGTAAAACAATTCCCAGCAAAGGAATT  1106
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAAGACCACTGAAGAGCTGTAAAACAATTCCCAGCAAAGGAATT  1150

seq1  C  1107
      |
seq2  C  1151