BAC Information

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BAC

Clone NameB6Ng01-275N11
Chromosome3 (Build37)8 (Build37)
Map Location 89,498,923 - 89,499,42187,795,389 - 87,796,471
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275N11.bB6Ng01-275N11.g
ACCGA076773GA076774
length4131,079
definitionB6Ng01-275N11.b B6Ng01-275N11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,498,923 - 89,499,421)(87,795,389 - 87,796,471)
sequence
ttggatcctccagtaccatgtctgcctgcaccccatgctgtgaataccat
gtttcccaccatgatgatagtggactgaacctctaagactttagccaacc
ccaattaatgtttacctttaaaagagttgccttggggctggagagatggc
tcagcagttaagagcaccgactgctcttccaaaggtcctgagttcaaatc
ccagcaaccacatggtggctcacaaccacccgtaatgagatctgacgccc
tcttctggagtgtctgaaggcagctacagtgtacttacatataataaata
aataaataaatcttaaaaaaaaaaaagagttgccttggatatggtgtctc
ttcacagcaatggaaccctaactagaacagaagttggtaccaggtacggg
gggtggggggggg

gaattctttagtgtttatatttgcgtgtttatgtaggtgcacctgaaggt
taaaggtcagcatcaagtcaggtactttccattgtgtttttctagacagg
gttcctcagtgagctcctggagtcagctgcttctgccttcccagtgctgg
gactgcagttgcatggctgcgcctggccttttatgaagatgttgggaatc
taaactcagcttatgctagaagcattttactgactgaaccatctgcccaa
tcctttggttttccttttcttttcttcttttctttctgaaccaaccatac
atttgtttcatacggctttttaaattatattgtagttttcttaatttaag
tgtgcttaggaagtttgatctacctgtaaggataaataattaaggttata
ggaagatctaaaagattagagtttagacaaccccaaatagctagaacagg
ctttatttaattccagaaagatggtttctctaattctggccaactaatca
tggcataggccccagtcactcagtggtcagagttcaagagaatgaggggt
tatatgtagccttttgaagctaaggataggaaaggtggaaaggggaattt
agccgctttccttagataacctgggttttttgtttgtttgtttgttttct
ggttttggagactgcggggtctgtcatctctttctgcaaccacaaggtgt
ttgaggcagctactttttccaaatagctggcttcctggagctctgagctc
agtttagggccttgacttttaggagtgattctcctactcctacacacaca
ccagagccgtttttccataattgcctacttttctgagcacatactttgtg
caaggtattgatgacataattgaaactttgtgtcatttaatcttcccaac
agtttttataggaatatgctacctcatttttcaagtgaaatttatgctaa
gaggaaggcagtatgagacttatccttgggagatgcaactcaagaacatc
tctcactgctattaggaatagatttcagaccatttatgtcattggccaac
aagtgagtttattggatacttacaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89498923_89499421
seq2: B6Ng01-275N11.b_185_463

seq1  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAA  50
      ||||||| ||||||||||||  | |||||||| |||||||||||||||||
seq2  GGGCTGGAGAGATGGCTCAGCAGTTAAGAGCA-CCGACTGCTCTTCCAAA  49

seq1  GGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCAT  100
      ||||| ||||||||||||||||||||||||||||||||||||||| || |
seq2  GGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGT  99

seq1  AACGAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTA  150
      || ||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  AATGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGGCAGCTACAGTGTA  149

seq1  CTTACATAT----AATTAATAAATAAATTTTAAAAAATAGTTAATAATGA  196
      |||||||||    ||| ||||||||||| ||||||||     || || ||
seq2  CTTACATATAATAAATAAATAAATAAATCTTAAAAAA-----AAAAAAGA  194

seq1  -TTTACTAGCATCTTAAAGCATCTT-AAAGCGTTGGTTTTCCTCCCAGAG  244
       ||  || | ||  |   |  |||| | |||  |||    |   | ||| 
seq2  GTTGCCTTGGAT-ATGGTGTCTCTTCACAGCAATGGAACCCTAACTAGAA  243

seq1  CTGA---TGGGAAAAAGGAC---AGCTATGAGCCAAACGCCATTTACCCT  288
      | ||   ||| |  | | ||    | |  | |                  
seq2  CAGAAGTTGGTACCAGGTACGGGGGGTGGGGGGGGG--------------  279

seq1  TGACCCAAATGCTCCAGAGATTTTTTTTTTTTTTAAAGCTTACCATCCAG  338
                                                        
seq2  --------------------------------------------------  279

seq1  GGCAGCAGTTGACTGTGTAAGTGTGTGAACAGCAAACTAACCGACTTGGG  388
                                                        
seq2  --------------------------------------------------  279

seq1  TGCCTTTCTTCAAAGACAGAGCCACTGAAGTCCCAACATTGTGAAAGTTG  438
                                                        
seq2  --------------------------------------------------  279

seq1  TGACTGACTGCAGGGGGAGCCTCGAGCACACCTTCCAAGGCTGACGGGGG  488
                                                        
seq2  --------------------------------------------------  279

seq1  GTGGGGGGGGG  499
                 
seq2  -----------  279


seq1: chr8_87795389_87796471
seq2: B6Ng01-275N11.g_66_1144 (reverse)

seq1  ACTCCTGTAAGTAATCCCAATAAACTCACTTGTTGGCCAAATTGAACATT  50
      |||||||||||||   ||||||||||||||||||||||||  || ||| |
seq2  ACTCCTGTAAGTA--TCCAATAAACTCACTTGTTGGCCAA--TG-ACA-T  44

seq1  AAATGGTCTGAAATCTATTCCTAATAGCAGTGAAGAGATGT--CTGAGTT  98
      |||||||||||||||||||||||||||||||| ||||||||   ||||||
seq2  AAATGGTCTGAAATCTATTCCTAATAGCAGTG-AGAGATGTTCTTGAGTT  93

seq1  GCATCTCCCAAGGATAAGTCTCATACTGCCTTCCTCTTAGCATAAATTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCCAAGGATAAGTCTCATACTGCCTTCCTCTTAGCATAAATTTC  143

seq1  ACTTGAAAAATGAGGTAGCATATTCCTAT-AAAACTGTTGGGAAGATTAA  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTTGAAAAATGAGGTAGCATATTCCTATAAAAACTGTTGGGAAGATTAA  193

seq1  ATGACACAAAGTTTCAATTATGTCATCAATACCTTGCACAAAGTATGTGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAAAGTTTCAATTATGTCATCAATACCTTGCACAAAGTATGTGC  243

seq1  TCAGAAAAGTAGGCAATTATGGAAAAACGGCTCTGGTGTGTGTGTAGGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGTAGGCAATTATGGAAAAACGGCTCTGGTGTGTGTGTAGGAG  293

seq1  TAGGAGAATCACTCCTAAAAGTCAAGGCCCTAAACTGAGCTCAGAGCTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATCACTCCTAAAAGTCAAGGCCCTAAACTGAGCTCAGAGCTCC  343

seq1  AGGAAGCCAGCTATTTGGAAAAAGTAGCTGCCTCAAACACCTTGTGGTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCAGCTATTTGGAAAAAGTAGCTGCCTCAAACACCTTGTGGTTG  393

seq1  CAGAAAGAGATGACAGACCCCGCAGTCTCCAAAACCAGAAAACAAACAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGATGACAGACCCCGCAGTCTCCAAAACCAGAAAACAAACAAA  443

seq1  CAAACAAAAAACCCAGGTTATCTAAGGAAAGCGGCTAAATTCCCCTTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAACCCAGGTTATCTAAGGAAAGCGGCTAAATTCCCCTTTCC  493

seq1  ACCTTTCCTATCCTTAGCTTCAAAAGGCTACATATAACCCCTCATTCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTATCCTTAGCTTCAAAAGGCTACATATAACCCCTCATTCTCT  543

seq1  TGAACTCTGACCACTGAGTGACTGGGGCCTATGCCATGATTAGTTGGCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTGACCACTGAGTGACTGGGGCCTATGCCATGATTAGTTGGCCA  593

seq1  GAATTAGAGAAACCATCTTTCTGGAATTAAATAAAGCCTGTTCTAGCTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAGAAACCATCTTTCTGGAATTAAATAAAGCCTGTTCTAGCTAT  643

seq1  TTGGGGTTGTCTAAACTCTAATCTTTTAGATCTTCCTATAACCTTAATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTGTCTAAACTCTAATCTTTTAGATCTTCCTATAACCTTAATTA  693

seq1  TTTATCCTTACAGGTAGATCAAACTTCCTAAGCACACTTAAATTAAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTTACAGGTAGATCAAACTTCCTAAGCACACTTAAATTAAGAAA  743

seq1  ACTACAATATAATTTAAAAAGCCGTATGAAACAAATGTATGGTTGGTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATATAATTTAAAAAGCCGTATGAAACAAATGTATGGTTGGTTCA  793

seq1  GAAAGAAAAGAAGAAAAGAAAAGGAAAACCAAAGGATTGGGCAGATGGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAGAAGAAAAGAAAAGGAAAACCAAAGGATTGGGCAGATGGTT  843

seq1  CAGTCAGTAAAATGCTTCTAGCATAAGCTGAGTTTAGATTCCCAACATCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTAAAATGCTTCTAGCATAAGCTGAGTTTAGATTCCCAACATCT  893

seq1  TCATAAAAGGCCAGGCGCAGCCATGCAACTGCAGTCCCAGCACTGGGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAGGCCAGGCGCAGCCATGCAACTGCAGTCCCAGCACTGGGAAG  943

seq1  GCAGAAGCAGCTGACTCCAGGAGCTCACTGAGGAACCCTGTCTAGAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAGCTGACTCCAGGAGCTCACTGAGGAACCCTGTCTAGAAAAA  993

seq1  CACAATGGAAAGTACCTGACTTGATGCTGACCTTTAACCTTCAGGTGCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGAAAGTACCTGACTTGATGCTGACCTTTAACCTTCAGGTGCAC  1043

seq1  CTACATAAACACGCAAATATAAACACTAAAGAATTC  1083
      ||||||||||||||||||||||||||||||||||||
seq2  CTACATAAACACGCAAATATAAACACTAAAGAATTC  1079


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