BAC Information

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BAC

Clone NameB6Ng01-277E01
Chromosome8 (Build37)
Map Location 67,056,420 - 67,242,727
singlet/doubletdoublet
Overlap geneCpe, Sc4mol, Klhl2
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneLOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E01.bB6Ng01-277E01.g
ACCGA077820GA077821
length1,115560
definitionB6Ng01-277E01.b B6Ng01-277E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,056,420 - 67,057,526)(67,242,160 - 67,242,727)
sequence
gaattcaggcatagatagatagatagataggtagatagatagatagatag
atagatagatagatagatagatagatagatagagaaaccttactctcttt
gaattgtcaaacaaaattaccaagtcaagtaggcttctagtcactcttta
atatatatatagtatatatatggaatatacttggtctcttcgtttggcca
gaacaagtttgaatttctcactatccagttatgtgtctgagaaatacttc
tattattttctataaaataagtggtctttataattgtaataacatactta
agtgtgtttagtttatcctaagccttttaaaaacaaggaaatctactgtc
ccttaattgtgactttgtccaggaaaaagacactagtagattttgtgttc
ctgctctcaagagtgttccagaaccaccagttaaaggagggtctttaatt
ttgttttttgtttatgaaactaagtctgaaacagcatctgggtcatcaga
tattttagaaatctaagctaagcgatcaaggctggattccaatctaggtg
tggctctctaaagctgatccctttcctgggccagctgatgcccttcccag
agtctttaaagaaaaaaaaagtttagggtgcagaagagatggctcagtca
ataaagtgcttgccacgcaaacaggaaacggaaattcagttccacagaac
ccactactaaacggcctggaaaaatcaacactccatcaagagctggcaag
gccttgtgaggctccacccttgctgagagctgtcagcacttggtggctgc
taagggaggagtcgattttcttctgggctgtggccactgataagttgacc
gtgctctggtggatgaccccgcacatgtgcacatttgggcagcattaatt
ggtcagaggagggtattttaaaaaaatgaaaaattttaaaagagaaaata
aacgttggggtggcgggtaataggtgagtcttctgaacggtggaacagaa
ttgcaccacatccaagacgcatcgtgtacatggtggttaacttttccaag
agaataaacttttgaactctcctgaaggaggaagagagaagggaagaatg
gaagagaagagaaaa

tctagtaggctgggctagccagccaagaatctctctgctgagataacaat
gatgcaccaccatgactattttaacctgagttctaaggatccaagtccag
ttctaatgcttgcaaagacatgactgatatatttccccagcccagtattt
ccttactttatttcatgtttttcataagttgtgctcctgtatgagtagaa
gccttgggggcctagaagaaatggacttgaccactacagcaaaagcttat
acacagcaagggatttgaaccaagaacctttgggagactgggttctttct
acagctagatgcctacaaacacaaataacaaaaactcattagttttgctg
tcttgtgagttgaaagacctttctttaaattaaaaaattattattattta
tgtatatgtgtatctatgtgagtgaatgctgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtacagaaggagaccagaagtgggagttggatcctctgga
actggaattatatgcagttgtccatccaagttgggtgttacgatctttgt
acagaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_67056420_67057526
seq2: B6Ng01-277E01.b_41_1155

seq1  GAATTCAGGCATAGATAGATAGATAGATAGGTAGATAGATAGATAGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCATAGATAGATAGATAGATAGGTAGATAGATAGATAGATAG  50

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGAGAAACCTTACTCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGAGAAACCTTACTCTCTTT  100

seq1  GAATTGTCAAACAAAATTACCAAGTCAAGTAGGCTTCTAGTCACTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCAAACAAAATTACCAAGTCAAGTAGGCTTCTAGTCACTCTTTA  150

seq1  ATATATATATAGTATATATATGGAATATACTTGGTCTCTTCGTTTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATAGTATATATATGGAATATACTTGGTCTCTTCGTTTGGCCA  200

seq1  GAACAAGTTTGAATTTCTCACTATCCAGTTATGTGTCTGAGAAATACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTTTGAATTTCTCACTATCCAGTTATGTGTCTGAGAAATACTTC  250

seq1  TATTATTTTCTATAAAATAAGTGGTCTTTATAATTGTAATAACATACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCTATAAAATAAGTGGTCTTTATAATTGTAATAACATACTTA  300

seq1  AGTGTGTTTAGTTTATCCTAAGCCTTTTAAAAACAAGGAAATCTACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTAGTTTATCCTAAGCCTTTTAAAAACAAGGAAATCTACTGTC  350

seq1  CCTTAATTGTGACTTTGTCCAGGAAAAAGACACTAGTAGATTTTGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTGTGACTTTGTCCAGGAAAAAGACACTAGTAGATTTTGTGTTC  400

seq1  CTGCTCTCAAGAGTGTTCCAGAACCACCAGTTAAAGGAGGGTCTTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCAAGAGTGTTCCAGAACCACCAGTTAAAGGAGGGTCTTTAATT  450

seq1  TTGTTTTTTGTTTATGAAACTAAGTCTGAAACAGCATCTGGGTCATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTGTTTATGAAACTAAGTCTGAAACAGCATCTGGGTCATCAGA  500

seq1  TATTTTAGAAATCTAAGCTAAGCGATCAAGGCTGGATTCCAATCTAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAAATCTAAGCTAAGCGATCAAGGCTGGATTCCAATCTAGGTG  550

seq1  TGGCTCTCTAAAGCTGATCCCTTTCCTGGGCCAGCTGATGCCCTTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTAAAGCTGATCCCTTTCCTGGGCCAGCTGATGCCCTTCCCAG  600

seq1  AGTCTTTAAAGAAAAAAAAAGTTTAGGGTGCAGAAGAGATGGCTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAAAGAAAAAAAAAGTTTAGGGTGCAGAAGAGATGGCTCAGTCA  650

seq1  ATAAAGTGCTTGCCACGCAAACAGGAAACGGAAATTCAGTTCCACAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGCTTGCCACGCAAACAGGAAACGGAAATTCAGTTCCACAGAAC  700

seq1  CCACTACTAAACGGCCTGGAAAAATCAACACTCCATCAAGAGCTGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTAAACGGCCTGGAAAAATCAACACTCCATCAAGAGCTGGCAAG  750

seq1  GCCTTGTGAGGCTCCACCCTTGCTGAGAGCTGTCAGCACTTGGTGGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGAGGCTCCACCCTTGCTGAGAGCTGTCAGCACTTGGTGGCTGC  800

seq1  TAAGGGAGGAGTCGATTTTCTTCTGGGCTGTGGCCACTGATAAGTTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGGAGTCGATTTTCTTCTGGGCTGTGGCCACTGATAAGTTGACC  850

seq1  GTGCTCTGGTGGATGACCCCGCACATGTGCACATTTGGGCAGCATTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGGTGGATGACCCCGCACATGTGCACATTTGGGCAGCATTAATT  900

seq1  GGTCAGAGGAGGGTATTTTAAAAAAATGAAAAATTTTAAAAGAGAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGAGGGTATTTTAAAAAAATGAAAAATTTTAAAAGAGAAAATA  950

seq1  AAGGTTGGGGTGGC-GGTAATAGGTGAGTCTTCTGAAC-GTGGAACAGTA  998
      || ||||||||||| ||||||||||||||||||||||| ||||||||| |
seq2  AACGTTGGGGTGGCGGGTAATAGGTGAGTCTTCTGAACGGTGGAACAGAA  1000

seq1  TTGCA-CACAATCAAGACGCATCGTGTACAT-GTGTTAAACTTT--CAAG  1044
      ||||| ||||  ||||||||||||||||||| ||| | ||||||  ||||
seq2  TTGCACCACATCCAAGACGCATCGTGTACATGGTGGTTAACTTTTCCAAG  1050

seq1  AG-ATAAACTTTGAAACTC-CTTGAAGGAGGAAGAG---AGGGAAGATGG  1089
      || |||||||||  ||||| | ||||||||||||||   ||||||||   
seq2  AGAATAAACTTTTGAACTCTCCTGAAGGAGGAAGAGAGAAGGGAAGA--A  1098

seq1  AGGAGGAGAAGAAGAAAA  1107
       ||| |||||| ||||||
seq2  TGGAAGAGAAG-AGAAAA  1115


seq1: chr8_67242160_67242727
seq2: B6Ng01-277E01.g_65_630 (reverse)

seq1  CACTTTCTGTGACAGAAGATCCTAACACCCAACTTGGGTGGACAACTGCC  50
      |||||||||| ||| |||||| ||||||||||||||| ||||||||||| 
seq2  CACTTTCTGT-ACA-AAGATCGTAACACCCAACTTGGATGGACAACTGCA  48

seq1  TATAACTCCAGCTCCAGGGGATCCAACTCCCACTTCTGGTCTCCTTCTGT  100
      ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TATAATTCCAGTTCCAGAGGATCCAACTCCCACTTCTGGTCTCCTTCTGT  98

seq1  ACACACACACACACACACACACACACACACACAGCATTCACTCACATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAGCATTCACTCACATAGA  148

seq1  TACACATATACATAAATAATAATAATTTTTTAATTTAAAGAAAGGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATACATAAATAATAATAATTTTTTAATTTAAAGAAAGGTCTTT  198

seq1  CAACTCACAAGACAGCAAAACTAATGAGTTTTTGTTATTTGTGTTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCACAAGACAGCAAAACTAATGAGTTTTTGTTATTTGTGTTTGTAG  248

seq1  GCATCTAGCTGTAGAAAGAACCCAGTCTCCCAAAGGTTCTTGGTTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAGCTGTAGAAAGAACCCAGTCTCCCAAAGGTTCTTGGTTCAAAT  298

seq1  CCCTTGCTGTGTATAAGCTTTTGCTGTAGTGGTCAAGTCCATTTCTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTGTGTATAAGCTTTTGCTGTAGTGGTCAAGTCCATTTCTTCTA  348

seq1  GGCCCCCAAGGCTTCTACTCATACAGGAGCACAACTTATGAAAAACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCAAGGCTTCTACTCATACAGGAGCACAACTTATGAAAAACATGA  398

seq1  AATAAAGTAAGGAAATACTGGGCTGGGGAAATATATCAGTCATGTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTAAGGAAATACTGGGCTGGGGAAATATATCAGTCATGTCTTTG  448

seq1  CAAGCATTAGAACTGGACTTGGATCCTTAGAACTCAGGTTAAAATAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTAGAACTGGACTTGGATCCTTAGAACTCAGGTTAAAATAGTCA  498

seq1  TGGTGGTGCATCATTGTTATCTCAGCAGAGAGATTCTTGGCTGGCTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCATCATTGTTATCTCAGCAGAGAGATTCTTGGCTGGCTAGCC  548

seq1  CAGCCTACTAGAGAATTC  568
      ||||||||||||||||||
seq2  CAGCCTACTAGAGAATTC  566


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