BAC Information

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BAC

Clone NameB6Ng01-277N01
Chromosome8 (Build37)
Map Location 96,396,649 - 96,543,584
singlet/doubletdoublet
Overlap geneGnao1, Amfr, Nudt21
Upstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneOgfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277N01.bB6Ng01-277N01.g
ACCGA078229GA078230
length1,1181,098
definitionB6Ng01-277N01.b B6Ng01-277N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,396,649 - 96,397,780)(96,542,486 - 96,543,584)
sequence
gaattccagtacaggcctgatttttttttttaaggtaggtgcttctctgc
ctctgactgcctccctgccctagatttgctttttgttgtttgtggtttag
gcatggtgtttgtttttatttttgagacaaggtcttgctatgtagcatag
aatttgagattgcagacattcaccatcatgcctctgtagcttacagtcta
gaacttgtcctccatgcctagctactcttgagtcttacagtgctctgcca
tgcctggtgaacctgcattcttacagtgctgtttgctcatccttaagttg
aagaattgtatgtgtctttccttgtccttctgcttgggattctgtgcacc
ttttcagtctgcacgcaaggctttctcagttaggacttctgcttgctatt
tgattactgactctcatccatcactttctctttcttctagaactcccaat
atgcctgcccagtctgatctgcttgggtctgccctgcacatcattgcttt
ttctgttcacatgtgctctctgtattctcctggaagtatatctgtatact
tggaagttttattcccattagttcctgagggcctcacacccacaactcag
cagggagagacccttgtactgcagttgggaagacagtattgtactgtgta
gaacatcttctgcatgtgtcctgcattgctctctgggtactgggatggtc
tggtcatactgttatatgcctcctaaggcactgagcatgtgcactgtttc
cgactgctcttctgctggggctttaatcattcagtaatgcgttccctgtg
gttgtttgtgggacctgagtagcagcagttctgcagctggtggcatggga
ttctcactccctctagttttgatggtattgaggaaagtgacccaccaatc
tacttttgggacactggatcaatccttttccctcacattctggttctctt
caccctcgggctaaggtttgcaacttatgaacttgctattgcttggcttc
taagcacagggacttgagatgtgagccttattagatcgagctactctctc
tctcccttactccacttatctaaacaagagatctgctctctttcatcagc
tcatgccttataattttt
gaattcctgtatgcagaagtaaaagaagccgtctctatgagcacagctta
cacgtgtagaagagtaactgtagaacaagttttggttttctcttgttccc
taaattgccaccaccttcctgtttgaagagtaaaatgaatatgaccgaga
tagtggtggaaacatgtggcagtgttcattagcttttggttctactcata
cttttttttgtacattaaagaaagtgaatttcttatttgtattttttttt
aagtttctcattaaactctgaaaagtcttagagccgaggatccttttttc
cctgctttagactggggaatgttaaaacatgatcatggatgagataaggt
gagattgtgggccctttgctccagtagtgttggaagcatatggtcctagg
ctgttacaggtgtttgtaatgaggactttcctttactctggggaactaaa
tttctctgattaagttcaaggtacagtgtgtaccaaactacactctgtta
caaagaattcccaatatattacctgacgagtatattttataaaactctct
aggccttacttcacaagtcaagacattaaacatttgggagtacattaaaa
ataggtaagctgaaaaccattggaattggtataaaaagaagtccatctag
aactcattgcagtattttcatataatggcatagtgattgtttgcactgct
gtggattgcttcttactgagtgagccatgacaaaattacatgagttttta
aactctcaaattatagagttacagttatgggaatctgaggtgttgtatac
gtaatgataaacatgattttagtaagcagcaaagcttttcaaaagtattt
tagagtaggctgggtatggcggtacatacgtagaaccccggcacctgggt
gcctaatgctgggggaaccagaatcccagtatagctgagatacttagcaa
gtccctacttcaaaataatagaaacaagggatagtctgatcaactggatt
ctagaggtcaagaacaagttttgttcagcccaaggaaacagcactttcaa
tttctaggtacactgcctggcatggttagtatgaatttatagaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96396649_96397780
seq2: B6Ng01-277N01.b_42_1159

seq1  GAATTCCAGTACAGGCCTGATTTTTTTTTTTAAGGTAGGTGCTTCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAGGCCTGATTTTTTTTTTTAAGGTAGGTGCTTCTCTGC  50

seq1  CTCTGACTGCCTCCCTGCCCTAGATTTGCTTTTTGTTGTTTGTGGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGCCTCCCTGCCCTAGATTTGCTTTTTGTTGTTTGTGGTTTAG  100

seq1  GCATGGTGTTTGTTTTTATTTTTGAGACAAGGTCTTGCTATGTAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGTTTGTTTTTATTTTTGAGACAAGGTCTTGCTATGTAGCATAG  150

seq1  AATTTGAGATTGCAGACATTCACCATCATGCCTCTGTAGCTTACAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGATTGCAGACATTCACCATCATGCCTCTGTAGCTTACAGTCTA  200

seq1  GAACTTGTCCTCCATGCCTAGCTACTCTTGAGTCTTACAGTGCTCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTCCTCCATGCCTAGCTACTCTTGAGTCTTACAGTGCTCTGCCA  250

seq1  TGCCTGGTGAACCTGCATTCTTACAGTGCTGTTTGCTCATCCTTAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGAACCTGCATTCTTACAGTGCTGTTTGCTCATCCTTAAGTTG  300

seq1  AAGAATTGTATGTGTCTTTCCTTGTCCTTCTGCTTGGGATTCTGTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTATGTGTCTTTCCTTGTCCTTCTGCTTGGGATTCTGTGCACC  350

seq1  TTTTCAGTCTGCACGCAAGGCTTTCTCAGTTAGGACTTCTGCTTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTCTGCACGCAAGGCTTTCTCAGTTAGGACTTCTGCTTGCTATT  400

seq1  TGATTACTGACTCTCATCCATCACTTTCTCTTTCTTCTAGAACTCCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGACTCTCATCCATCACTTTCTCTTTCTTCTAGAACTCCCAAT  450

seq1  ATGCCTGCCCAGTCTGATCTGCTTGGGTCTGCCCTGCACATCATTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCCAGTCTGATCTGCTTGGGTCTGCCCTGCACATCATTGCTTT  500

seq1  TTCTGTTCACATGTGCTCTCTGTATTCTCCTGGAAGTATATCTGTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCACATGTGCTCTCTGTATTCTCCTGGAAGTATATCTGTATACT  550

seq1  TGGAAGTTTTATTCCCATTAGTTCCTGAGGGCCTCACACCCACAACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTTATTCCCATTAGTTCCTGAGGGCCTCACACCCACAACTCAG  600

seq1  CAGGGAGAGACCCTTGTACTGCAGTTGGGAAGACAGTATTGTACTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGACCCTTGTACTGCAGTTGGGAAGACAGTATTGTACTGTGTA  650

seq1  GAACATCTTCTGCATGTGTCCTGCATTGCTCTCTGGGTACTGGGATGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTCTGCATGTGTCCTGCATTGCTCTCTGGGTACTGGGATGGTC  700

seq1  TGGTCATACTGTTATATGCCTCCTAAGGCACTGAGCATGTGCACTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATACTGTTATATGCCTCCTAAGGCACTGAGCATGTGCACTGTTTC  750

seq1  CGACTGCTCTTCTGCTGGGGCTTTAATCATTCAGTAATGCGTTCCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCTCTTCTGCTGGGGCTTTAATCATTCAGTAATGCGTTCCCTGTG  800

seq1  GTTGTTTGTGGGACCTGAGTAGCAGCAG-TCTGCAGCTGGTGGCATGGGA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTGTTTGTGGGACCTGAGTAGCAGCAGTTCTGCAGCTGGTGGCATGGGA  850

seq1  TTCTCACTCCCTCTAG-TTTGATGGTATTGAGGAAAGTGACCCACCAATC  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTCACTCCCTCTAGTTTTGATGGTATTGAGGAAAGTGACCCACCAATC  900

seq1  TACTTTTGGGACAACTGGATCAATCCTTTTCCCTCACATTCTGGTTCTCC  948
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TACTTTTGGGAC-ACTGGATCAATCCTTTTCCCTCACATTCTGGTTCT-C  948

seq1  TTCAACCCTCGGGCTAAGGTTTGCAACTTATGAACTTGCTATTGCTTGGC  998
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTC-ACCCTCGGGCTAAGGTTTGCAACTTATGAACTTGCTATTGCTTGG-  996

seq1  CTCCTAAGCAACAGGGAACTGGAGATGTGAGCCCTA-TAGATCCGAGCTA  1047
      || |||||| |||||| ||| |||||||||||| || ||||| |||||||
seq2  CTTCTAAGC-ACAGGG-ACTTGAGATGTGAGCCTTATTAGAT-CGAGCTA  1043

seq1  CTCTCTCTCTCCCCTACTCCCACCTTATCCTAAACAAAGAGGATCTGCTC  1097
      ||||||||||||| ||||||   ||||| |||||| |||| |||||||||
seq2  CTCTCTCTCTCCCTTACTCC--ACTTAT-CTAAAC-AAGA-GATCTGCTC  1088

seq1  TCTTTCACTCAGGCTCATGCCTTATTTATATTTTT  1132
      ||||||| ||| |||||||||||||    ||||||
seq2  TCTTTCA-TCA-GCTCATGCCTTAT---AATTTTT  1118

seq1: chr8_96542486_96543584
seq2: B6Ng01-277N01.g_66_1163 (reverse)

seq1  TTACTCCTATAATTTCATACTAACCATG-CAGGCAGTGTA-CTAGAAATT  48
      ||||| |||||| ||||||||||||||| ||||||||||| |||||||||
seq2  TTACTTCTATAAATTCATACTAACCATGCCAGGCAGTGTACCTAGAAATT  50

seq1  TAAAGTTGCTGTTTTCCTTGGGCTG-ACAAAACTTG-TCTTGACCTCTAG  96
       |||| ||||| ||||||||||||| |||||||||| |||||||||||||
seq2  GAAAG-TGCTG-TTTCCTTGGGCTGAACAAAACTTGTTCTTGACCTCTAG  98

seq1  AATCCAGTTGATTCAGACTATTCCTTTGTTTCTATTATTTTTGAGGTAGG  146
      ||||||||||| |||||||| ||| |||||||||||| |||||| |||||
seq2  AATCCAGTTGA-TCAGACTA-TCCCTTGTTTCTATTA-TTTTGAAGTAGG  145

seq1  GACTTGCTAAGTATCTCAGCTATACTGGGATTCTGGTTCCCCCAGCATTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTAAGTATCTCAGCTATACTGGGATTCTGGTTCCCCCAGCATTA  195

seq1  GGCACCCAGGTGCCGGGGTTCTACGTATGTACCGCCATACCCAGCCTACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCAGGTGCCGGGGTTCTACGTATGTACCGCCATACCCAGCCTACT  245

seq1  CTAAAATACTTTTGAAAAGCTTTGCTGCTTACTAAAATCATGTTTATCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATACTTTTGAAAAGCTTTGCTGCTTACTAAAATCATGTTTATCAT  295

seq1  TACGTATACAACACCTCAGATTCCCATAACTGTAACTCTATAATTTGAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATACAACACCTCAGATTCCCATAACTGTAACTCTATAATTTGAGA  345

seq1  GTTTAAAAACTCATGTAATTTTGTCATGGCTCACTCAGTAAGAAGCAATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAACTCATGTAATTTTGTCATGGCTCACTCAGTAAGAAGCAATC  395

seq1  CACAGCAGTGCAAACAATCACTATGCCATTATATGAAAATACTGCAATGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGTGCAAACAATCACTATGCCATTATATGAAAATACTGCAATGA  445

seq1  GTTCTAGATGGACTTCTTTTTATACCAATTCCAATGGTTTTCAGCTTACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGATGGACTTCTTTTTATACCAATTCCAATGGTTTTCAGCTTACC  495

seq1  TATTTTTAATGTACTCCCAAATGTTTAATGTCTTGACTTGTGAAGTAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATGTACTCCCAAATGTTTAATGTCTTGACTTGTGAAGTAAGG  545

seq1  CCTAGAGAGTTTTATAAAATATACTCGTCAGGTAATATATTGGGAATTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGTTTTATAAAATATACTCGTCAGGTAATATATTGGGAATTCT  595

seq1  TTGTAACAGAGTGTAGTTTGGTACACACTGTACCTTGAACTTAATCAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAGAGTGTAGTTTGGTACACACTGTACCTTGAACTTAATCAGAG  645

seq1  AAATTTAGTTCCCCAGAGTAAAGGAAAGTCCTCATTACAAACACCTGTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTTCCCCAGAGTAAAGGAAAGTCCTCATTACAAACACCTGTAA  695

seq1  CAGCCTAGGACCATATGCTTCCAACACTACTGGAGCAAAGGGCCCACAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGACCATATGCTTCCAACACTACTGGAGCAAAGGGCCCACAAT  745

seq1  CTCACCTTATCTCATCCATGATCATGTTTTAACATTCCCCAGTCTAAAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTATCTCATCCATGATCATGTTTTAACATTCCCCAGTCTAAAGC  795

seq1  AGGGAAAAAAGGATCCTCGGCTCTAAGACTTTTCAGAGTTTAATGAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAAGGATCCTCGGCTCTAAGACTTTTCAGAGTTTAATGAGAAA  845

seq1  CTTAAAAAAAAATACAAATAAGAAATTCACTTTCTTTAATGTACAAAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAATACAAATAAGAAATTCACTTTCTTTAATGTACAAAAAA  895

seq1  AAGTATGAGTAGAACCAAAAGCTAATGAACACTGCCACATGTTTCCACCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAGTAGAACCAAAAGCTAATGAACACTGCCACATGTTTCCACCA  945

seq1  CTATCTCGGTCATATTCATTTTACTCTTCAAACAGGAAGGTGGTGGCAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCGGTCATATTCATTTTACTCTTCAAACAGGAAGGTGGTGGCAAT  995

seq1  TTAGGGAACAAGAGAAAACCAAAACTTGTTCTACAGTTACTCTTCTACAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAACAAGAGAAAACCAAAACTTGTTCTACAGTTACTCTTCTACAC  1045

seq1  GTGTAAGCTGTGCTCATAGAGACGGCTTCTTTTACTTCTGCATACAGGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGCTGTGCTCATAGAGACGGCTTCTTTTACTTCTGCATACAGGAA  1095

seq1  TTC  1099
      |||
seq2  TTC  1098