BAC Information

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BAC

Clone NameB6Ng01-277O02
Chromosome8 (Build37)
Map Location 107,955,749 - 108,120,105
singlet/doubletdoublet
Overlap geneLrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik
Upstream geneDync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19
Downstream geneLOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277O02.bB6Ng01-277O02.g
ACCGA078277GA078278
length1,1261,143
definitionB6Ng01-277O02.b B6Ng01-277O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,955,749 - 107,956,873)(108,118,942 - 108,120,105)
sequence
gaattcagtttcatttacatcaccttacatcattagagctccctaaaatt
acacctcccatccccgaggctcctgcacattgattgcggcgataattgag
ataattgatttccttagagactggtgagtcatctgcatccattgctgcga
atactctcaacctccctggcttctcaaccaagctcctccccagctgcaga
atctcttgtgtttgcaacctgtaacgtaactgccattaacagaacagtat
tacattagcacagacaaaaattcatgacttaaaatatacaatgagttaaa
gtatacaatctccattgagaataaactgccttagtagacagcccattttc
caagggctttagaaacaccactgttggttttccggtacaaattaaggtga
ttgtaccacattaatggccacgcctcagactcagagaaagctttctgttg
tatctgatgcacccttgtgaattagcctgccattcttaaacagatgacct
tcacttaagagagttttatttggcctcaaggcttagtccccttaaaagac
ctattcaattgtacataaagtctaagaagcagtagactgtgttcaaagtc
ccagaaagaactctagtaacaagagactcactgtgcagtttagatattca
atgtcttcagttgctgacatacaatgcttcattttcctgactttttaatc
tattcatgtggacatgactttgacagagtttcttgataaaccataataag
gtaatattttccttttcctttttccctttgatgtctctgtgcatataaaa
gaggagtatgggttgtttgtttttgaatttaaaagcatttttatatttca
aatagatgccattttgaaattattttggtaaatgctgaagtgcgtgaaga
gcaacattccggttcctcagagtctcccacaaggcgagaatcccaatgac
tacgttgggttataatagcctagattttttctctgggtacacacatttat
gtatccattttcagacaggaaagtgctttggagcacaatttggactggcc
ttatatggagctgattggattagtctacatacgtatatagcattaagtgt
attgttaaagactcacccattgagct
gaattctaattgcttctctctggctagctctctttctggttcttgggggc
tgggtctccttccctcttccttggtatcctaacagtttccagggccctgc
ttctgaatccacagtagcgtcttgagtttctctcagtcccttcacttagg
atgacccttggggacctcaaactcagtgtgtgaagttgatctcatctcct
cgcagttgtgttcctgtggccatttctctgacattccactttcttctatc
tgtaaatagaggtggaccctgtccacccttacccatctatctgaaactct
gtccttgattttcctgacttattctactcttcataggatgggttccctct
ataggttggaccctgcccctcctcgctttcttactggtttctcatctctg
gccagttccccaataggagggcctaagtcctgtcagacttcatgttcccc
gactgcaccccctcttatctctctgtctctgcacagggtggtctgtgcac
ctgaatgctttcactgcttttgcctacctgactcacacccccttccttgt
gagctcccagctgggatgctagtgccttttggatcattcctagagactcc
aggcttggtcaggaatctgtcctttgtcctcaggatgtcctaaatttgtc
acttatcaacaccctcatctgcctgttcttacatggagtaccctcctcca
aggccatatcaaggctgaatcacctgactgcttagtttcctatgcccaga
agacctagatatcaaaaaccagtgagttctaaggataggaaggtcacagt
cgctggtcatcacggtaaaccggtgaccaagttaagctgagacctaggtt
cttaccttcctctcccgagtttctttgcttcccaagatgccattgtgaac
tgaggagtcttgaaggtctgatagactagacaggaagagagttgtcctag
ttgatcttgtctttggacagcagccatgagctcgggtcattagaacccag
gactgtcccaggacaccgaaggagctgtatagtgaccacagtcaaccatc
tgatgaatctctgaactcccttgcctccggcatgcgtggagtgctggccg
acgtcatcggaagactgaattcttaagggtcctgtgtggcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107955749_107956873
seq2: B6Ng01-277O02.b_44_1169

seq1  GAATTCAGTTTCATTTACATCACCTTACATCATTAGAGCTCCCTAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCATTTACATCACCTTACATCATTAGAGCTCCCTAAAATT  50

seq1  ACACCTCCCATCCCCGAGGCTCCTGCACATTGATTGCGGCGATAATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCCATCCCCGAGGCTCCTGCACATTGATTGCGGCGATAATTGAG  100

seq1  ATAATTGATTTCCTTAGAGACTGGTGAGTCATCTGCATCCATTGCTGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATTTCCTTAGAGACTGGTGAGTCATCTGCATCCATTGCTGCGA  150

seq1  ATACTCTCAACCTCCCTGGCTTCTCAACCAAGCTCCTCCCCAGCTGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAACCTCCCTGGCTTCTCAACCAAGCTCCTCCCCAGCTGCAGA  200

seq1  ATCTCTTGTGTTTGCAACCTGTAACGTAACTGCCATTAACAGAACAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGTGTTTGCAACCTGTAACGTAACTGCCATTAACAGAACAGTAT  250

seq1  TACATTAGCACAGACAAAAATTCATGACTTAAAATATACAATGAGTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGCACAGACAAAAATTCATGACTTAAAATATACAATGAGTTAAA  300

seq1  GTATACAATCTCCATTGAGAATAAACTGCCTTAGTAGACAGCCCATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAATCTCCATTGAGAATAAACTGCCTTAGTAGACAGCCCATTTTC  350

seq1  CAAGGGCTTTAGAAACACCACTGTTGGTTTTCCGGTACAAATTAAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTTAGAAACACCACTGTTGGTTTTCCGGTACAAATTAAGGTGA  400

seq1  TTGTACCACATTAATGGCCACGCCTCAGACTCAGAGAAAGCTTTCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCACATTAATGGCCACGCCTCAGACTCAGAGAAAGCTTTCTGTTG  450

seq1  TATCTGATGCACCCTTGTGAATTAGCCTGCCATTCTTAAACAGATGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATGCACCCTTGTGAATTAGCCTGCCATTCTTAAACAGATGACCT  500

seq1  TCACTTAAGAGAGTTTTATTTGGCCTCAAGGCTTAGTCCCCTTAAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAGAGAGTTTTATTTGGCCTCAAGGCTTAGTCCCCTTAAAAGAC  550

seq1  CTATTCAATTGTACATAAAGTCTAAGAAGCAGTAGACTGTGTTCAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATTGTACATAAAGTCTAAGAAGCAGTAGACTGTGTTCAAAGTC  600

seq1  CCAGAAAGAACTCTAGTAACAAGAGACTCACTGTGCAGTTTAGATATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGAACTCTAGTAACAAGAGACTCACTGTGCAGTTTAGATATTCA  650

seq1  ATGTCTTCAGTTGCTGACATACAATGCTTCATTTTCCTGACTTTTTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCAGTTGCTGACATACAATGCTTCATTTTCCTGACTTTTTAATC  700

seq1  TATTCATGTGGACATGACTTTGACAGAGTTTCTTGATAAACCATAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTGGACATGACTTTGACAGAGTTTCTTGATAAACCATAATAAG  750

seq1  GTAATATTTTCCTTTTCCTTTTTCCCTTTGATGTCTCTGTGCATATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTTCCTTTTCCTTTTTCCCTTTGATGTCTCTGTGCATATAAAA  800

seq1  GAGGAGTATGGGTTGTTTG-TTTTGAATTTAAAAGCATTTTTATATTTCA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGGAGTATGGGTTGTTTGTTTTTGAATTTAAAAGCATTTTTATATTTCA  850

seq1  AATAGATGCCATTTTGAAATTATTTTGGTAAATGCTGAAGTGCGTGAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGCCATTTTGAAATTATTTTGGTAAATGCTGAAGTGCGTGAAGA  900

seq1  GCAACATTCCGGTTCCTCAGAGTCTCCCCACAA-GCGAGAATCCCAATGA  948
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GCAACATTCCGGTTCCTCAGAGTCT-CCCACAAGGCGAGAATCCCAATGA  949

seq1  CTACGTT-GGTTAT-ATAGCCTAGATTTTTTCTCTGGGTACACACATTTA  996
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CTACGTTGGGTTATAATAGCCTAGATTTTTTCTCTGGGTACACACATTTA  999

seq1  TGTATCCATTTTCAGACAGGAAAAGTGCTTTGAAGCACAATTT-GACTGG  1045
      |||||||||||||||||||| ||||||||||| |||||||||| ||||||
seq2  TGTATCCATTTTCAGACAGG-AAAGTGCTTTGGAGCACAATTTGGACTGG  1048

seq1  CCCTTATAT-GAGCTGAATTGAATTAGTCTACATTAACGTAATATAGCAT  1094
       |||||||| |||||| |||| ||||||||||||  |||| |||||||||
seq2  -CCTTATATGGAGCTG-ATTGGATTAGTCTACAT--ACGT-ATATAGCAT  1093

seq1  T-AGTGTAT--GTAAAGACTTCACCCCATGAGCT  1125
      | |||||||   ||||||| ||||||  ||||||
seq2  TAAGTGTATTGTTAAAGAC-TCACCCATTGAGCT  1126

seq1: chr8_108118942_108120105
seq2: B6Ng01-277O02.g_68_1210 (reverse)

seq1  GCTGCCAC-CAGCACCCTTTAGGAATTCAGGCCCTCCCCGAATGACGTGC  49
      |||||||| ||| |||| ||| ||||||||    ||  |  ||||||| |
seq2  GCTGCCACACAGGACCC-TTAAGAATTCAG----TCTTCCGATGACGT-C  44

seq1  GGCCAGCACTCCCACGGCATAGCCCCGAAGGCAAAGGGAGTCTCAGGAAG  99
      |||||||||| |||| ||||    ||| |||| |||||||| ||||  ||
seq2  GGCCAGCACT-CCAC-GCAT---GCCGGAGGC-AAGGGAGT-TCAG--AG  85

seq1  ATTTCATCAGATGGGTTGACCTGTGGTCACTATACCAGCTCCCTCGGTGT  149
      | |||||||||| |||||| |||||||||||||| ||||||| |||||||
seq2  A-TTCATCAGAT-GGTTGA-CTGTGGTCACTATA-CAGCTCCTTCGGTGT  131

seq1  CCTGGGACAGTTCCTGGGTTCTAATGAACCCGAGCTCATGGCTGCTGTCC  199
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  CCTGGGACAG-TCCTGGGTTCTAATG-ACCCGAGCTCATGGCTGCTGTCC  179

seq1  AAAGACAAGATCACCTAGGACAACTCTCTTCCTGTCTAGTCTTATCAGAC  249
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AAAGACAAGATCAACTAGGACAACTCTCTTCCTGTCTAGTC-TATCAGAC  228

seq1  CTTCAAGACTCCTCAGTTCACAATGGCATCTTGGGAAGCAAAGAAACTCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGACTCCTCAGTTCACAATGGCATCTTGGGAAGCAAAGAAACTCG  278

seq1  GGAGAGGAAGGTAAGAACCTAGGTCTCAGCTTAACTTGGTCACCGGTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAGGTAAGAACCTAGGTCTCAGCTTAACTTGGTCACCGGTTTA  328

seq1  CCGTGATGACCAGCGACTGTGACCTTCCTATCCTTAGAACTCACTGGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATGACCAGCGACTGTGACCTTCCTATCCTTAGAACTCACTGGTTT  378

seq1  TTGATATCTAGGTCTTCTGGGCATAGGAAACTAAGCAGTCAGGTGATTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATCTAGGTCTTCTGGGCATAGGAAACTAAGCAGTCAGGTGATTCA  428

seq1  GCCTTGATATGGCCTTGGAGGAGGGTACTCCATGTAAGAACAGGCAGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATATGGCCTTGGAGGAGGGTACTCCATGTAAGAACAGGCAGATG  478

seq1  AGGGTGTTGATAAGTGACAAATTTAGGACATCCTGAGGACAAAGGACAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTGATAAGTGACAAATTTAGGACATCCTGAGGACAAAGGACAGA  528

seq1  TTCCTGACCAAGCCTGGAGTCTCTAGGAATGATCCAAAAGGCACTAGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCAAGCCTGGAGTCTCTAGGAATGATCCAAAAGGCACTAGCAT  578

seq1  CCCAGCTGGGAGCTCACAAGGAAGGGGGTGTGAGTCAGGTAGGCAAAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGGGAGCTCACAAGGAAGGGGGTGTGAGTCAGGTAGGCAAAAGC  628

seq1  AGTGAAAGCATTCAGGTGCACAGACCACCCTGTGCAGAGACAGAGAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGCATTCAGGTGCACAGACCACCCTGTGCAGAGACAGAGAGATA  678

seq1  AGAGGGGGTGCAGTCGGGGAACATGAAGTCTGACAGGACTTAGGCCCTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGTGCAGTCGGGGAACATGAAGTCTGACAGGACTTAGGCCCTCC  728

seq1  TATTGGGGAACTGGCCAGAGATGAGAAACCAGTAAGAAAGCGAGGAGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGGAACTGGCCAGAGATGAGAAACCAGTAAGAAAGCGAGGAGGGG  778

seq1  CAGGGTCCAACCTATAGAGGGAACCCATCCTATGAAGAGTAGAATAAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCAACCTATAGAGGGAACCCATCCTATGAAGAGTAGAATAAGTC  828

seq1  AGGAAAATCAAGGACAGAGTTTCAGATAGATGGGTAAGGGTGGACAGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCAAGGACAGAGTTTCAGATAGATGGGTAAGGGTGGACAGGGT  878

seq1  CCACCTCTATTTACAGATAGAAGAAAGTGGAATGTCAGAGAAATGGCCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTATTTACAGATAGAAGAAAGTGGAATGTCAGAGAAATGGCCAC  928

seq1  AGGAACACAACTGCGAGGAGATGAGATCAACTTCACACACTGAGTTTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACAACTGCGAGGAGATGAGATCAACTTCACACACTGAGTTTGAG  978

seq1  GTCCCCAAGGGTCATCCTAAGTGAAGGGACTGAGAGAAACTCAAGACGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAAGGGTCATCCTAAGTGAAGGGACTGAGAGAAACTCAAGACGCT  1028

seq1  ACTGTGGATTCAGAAGCAGGGCCCTGGAAACTGTTAGGATACCAAGGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGATTCAGAAGCAGGGCCCTGGAAACTGTTAGGATACCAAGGAAG  1078

seq1  AGGGAAGGAGACCCAGCCCCCAAGAACCAGAAAGAGAGCTAGCCAGAGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGAGACCCAGCCCCCAAGAACCAGAAAGAGAGCTAGCCAGAGAG  1128

seq1  AAGCAATTAGAATTC  1164
      |||||||||||||||
seq2  AAGCAATTAGAATTC  1143