BAC Information

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BAC

Clone NameB6Ng01-278A14
Chromosome8 (Build37)
Map Location 7,680,312 - 7,812,562
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A14.bB6Ng01-278A14.g
ACCGA078391GA078392
length1,1231,104
definitionB6Ng01-278A14.b B6Ng01-278A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,680,312 - 7,681,443)(7,811,474 - 7,812,562)
sequence
gaattctttaaaatatggttctgcaattacagtatattcaacatagcata
atgagtaaagtaagaatatatcacattccttgtttacagagaccaaagtt
gccatttgaaaagtgtcagtggggtttgcagaggggaaactgggaaaggg
gataaaatttgcaatgtaaacaaatacaatatccaatttaaaaaggagaa
agaaaagtgttggtgaacacagcacaggttcaaaatgatctaaatattct
tctgaaacgccaacagaatgcagataagggtgcatgaaagctacagttta
gaacaatgggcaagctattaccaggtagaggcatggttggttgtgggcaa
agatcgttctaaggatgagaaaccgtgttattaatcaatgtccatgattg
aggtaattaacacagaagaataagcagatgcattcctaagtatgcatgta
tgtctgtgtgtggatgtgtgagtgtaggtgcccataaataccagaaaggg
cggcaagtttccttggacctggaatctcagacaattgttagccatgtgat
atgagtgctagaaacccactggaaaacaaactcaggtcttttgcaagggc
attacatgttcttaactgaggacccatactctcagccccgaagaacaagg
ggctttaatagaaaagtatctgtctgaattttggtcagttgaagttgaaa
tgtcagtatggccaggtatagataatagcaaatcattttacagaagtctg
tgcatgaaaaaccaaaacaaaacaaaaaaacaaagcaaacaaaacaaaac
aaacaagcaaaaaaacccagaaagacaaaaaacaaaaaccagaataaaaa
acacatccacaggacgtggacatatggtacttgtcattattcaaattgtg
gttaagttgcagagcagacatgattaggtattgggtgggggggcaggaag
aaccaaagacctgagggccagcaaaagaatggaaacacacacctcactta
gagtaggatgtgggaacactccagaatgtacagagacctgcaggtgagag
actctctcagactcaaaggagggacttatacaaatgcccttacagtgaga
gagtgaccttgtaagcccacctc

gaattcagaagagatgaatagaaaggaaatggaaggagagagggaaaaca
cctgtgctctgatttagttacagattctgttaaagatcttgacaaacaag
gttccagatgtgttgtgctgttgatttttgctattgattgtggacataaa
agacttgactaaaatgccaccataatgtatcacaatagaaaagaggtgac
agtagggattcaacttcgcctctgtgtgttgcagagtggtggctatagga
accattgattgtacttggtcttaactaggaaacacatctaaagttatgtg
atcgagatactgttagcaaatctgaagggcagtggagtcaatattaatta
gaaatgataggttctctacagtagaaaagaaagctagcatgctattaaaa
tggctagagagcaatagacacaggtagagtcaaagtcactgtccatgaaa
gagtctgcaaattgagaaaaaaaaaaatacatagcattctccttcccctc
aaaatgccgtcttcagggaccttggtcttgtgatttttttttttttaaat
tctttcctatgtcttaaaaactacaaaaaatgacagcaattaagtgaaca
gacagtgacaatgcaagtaagtttcaccttgggaataaggctccggatcc
ttggagagcctgtcacctgcaaggagaaagcctgcgctgctgtttgcaaa
tgtattgcagagccactgcaaatctgtgcatgtgtttcttggtgttgcaa
aatggacttagagctgagtgtagcgcataacaaaatctccacttagttta
agtaaataaaatatttgagctatgtgtacttgcccacccttattattata
ttatctttatatatatatatatgagacctaaatacatcttggtgattcct
ctttgtacgattatcttaaatcgtgtgttcagggtcatctagtaaccact
gaaatagaggatgtattttattttctgctttattaagaaatattttgtgt
taagttgggtatcccattggtggagggagccagtagatgtaggttctggt
atagatgtggatgtatgggtgtgtttgtacaattatgcctgacctcttat
attc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_7680312_7681443
seq2: B6Ng01-278A14.b_45_1167

seq1  GAATTCTTTAAAATATGGTTCTGCAATTACAGTATATTCAACATAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATATGGTTCTGCAATTACAGTATATTCAACATAGCATA  50

seq1  ATGAGTAAAGTAAGAATATATCACATTCCTTGTTTACAGAGACCAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAAAGTAAGAATATATCACATTCCTTGTTTACAGAGACCAAAGTT  100

seq1  GCCATTTGAAAAGTGTCAGTGGGGTTTGCAGAGGGGAAACTGGGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGAAAAGTGTCAGTGGGGTTTGCAGAGGGGAAACTGGGAAAGGG  150

seq1  GATAAAATTTGCAATGTAAACAAATACAATATCCAATTTAAAAAGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATTTGCAATGTAAACAAATACAATATCCAATTTAAAAAGGAGAA  200

seq1  AGAAAAGTGTTGGTGAACACAGCACAGGTTCAAAATGATCTAAATATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGTTGGTGAACACAGCACAGGTTCAAAATGATCTAAATATTCT  250

seq1  TCTGAAACGCCAACAGAATGCAGATAAGGGTGCATGAAAGCTACAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACGCCAACAGAATGCAGATAAGGGTGCATGAAAGCTACAGTTTA  300

seq1  GAACAATGGGCAAGCTATTACCAGGTAGAGGCATGGTTGGTTGTGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGGCAAGCTATTACCAGGTAGAGGCATGGTTGGTTGTGGGCAA  350

seq1  AGATCGTTCTAAGGATGAGAAACCGTGTTATTAATCAATGTCCATGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTTCTAAGGATGAGAAACCGTGTTATTAATCAATGTCCATGATTG  400

seq1  AGGTAATTAACACAGAAGAATAAGCAGATGCATTCCTAAGTATGCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTAACACAGAAGAATAAGCAGATGCATTCCTAAGTATGCATGTA  450

seq1  TGTCTGTGTGTGGATGTGTGAGTGTAGGTGCCCATAAATACCAGAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGGATGTGTGAGTGTAGGTGCCCATAAATACCAGAAAGGG  500

seq1  CGGCAAGTTTCCTTGGACCTGGAATCTCAGACAATTGTTAGCCATGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGTTTCCTTGGACCTGGAATCTCAGACAATTGTTAGCCATGTGAT  550

seq1  ATGAGTGCTAGAAACCCACTGGAAAACAAACTCAGGTCTTTTGCAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGCTAGAAACCCACTGGAAAACAAACTCAGGTCTTTTGCAAGGGC  600

seq1  ATTACATGTTCTTAACTGAGGACCCATACTCTCAGCCCCGAAGAACAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTTCTTAACTGAGGACCCATACTCTCAGCCCCGAAGAACAAGG  650

seq1  GGCTTTAATAGAAAAGTATCTGTCTGAATTTTGGTCAGTTGAAGTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAATAGAAAAGTATCTGTCTGAATTTTGGTCAGTTGAAGTTGAAA  700

seq1  TGTCAGTATGGCCAGGTATAGATAATAGCAAATCATTTTACAGAAGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTATGGCCAGGTATAGATAATAGCAAATCATTTTACAGAAGTCTG  750

seq1  TGCATGAAAAACCAAAACAAAACAAAAAAACAAAGCAAACAAAACAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAAAACCAAAACAAAACAAAAAAACAAAGCAAACAAAACAAAAC  800

seq1  AAACAAGCAAAAAAACCCAGAAAGACAAAAAACAAAAACCAGAATAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCAAAAAAACCCAGAAAGACAAAAAACAAAAACCAGAATAAAAA  850

seq1  ACACATCCACAGGACGTGGACATATGGTACTTGTCATTATTCAAATTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCACAGGACGTGGACATATGGTACTTGTCATTATTCAAATTGTG  900

seq1  GTTAAGTTGCAGAGCAGACATGATTAGGTATTGGGT-GGGGGGCAGGAAG  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTAAGTTGCAGAGCAGACATGATTAGGTATTGGGTGGGGGGGCAGGAAG  950

seq1  AACCAAAGACCTGAGGGCCAGCAAAAGAATGGAAACACACAACCTCACCT  999
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AACCAAAGACCTGAGGGCCAGCAAAAGAATGGAAACACAC-ACCTCA-CT  998

seq1  TAGGAGGTAGGATGTGGGGAACACTCCAGAATGTACCAGAGACCTGGAAG  1049
      |||   ||||||||| ||||||||||||||||||| ||||||||| | ||
seq2  TAG--AGTAGGATGT-GGGAACACTCCAGAATGTA-CAGAGACCT-GCAG  1043

seq1  GTGAGAGACTCTC-AGGACTCAAAGGGAGGGGCCTTATACAAAATGCCC-  1097
      |||||||||||||   ||||||||||   ||| ||||||| |||||||| 
seq2  GTGAGAGACTCTCTCAGACTCAAAGG--AGGGACTTATAC-AAATGCCCT  1090

seq1  TACAGTGAGGAGAGTGAACTTGTAAAGCCCACCTC  1132
      |||||||| |||||||| ||||| |||||||||||
seq2  TACAGTGA-GAGAGTGACCTTGT-AAGCCCACCTC  1123


seq1: chr8_7811474_7812562
seq2: B6Ng01-278A14.g_68_1171 (reverse)

seq1  GAATAT-AGA-GTCAGGGCATAATTGTACA---ACACACATACAT-CACA  44
      |||||| ||| |||| ||||||||||||||   |||| ||||||| ||||
seq2  GAATATAAGAGGTCA-GGCATAATTGTACAAACACACCCATACATCCACA  49

seq1  TCCTATTACAGAA-CTACATCTACTGGCT-CCTC--ACAATGGGATACCC  90
      | ||||  ||||| ||||||||||||||| ||||   |||||||||||||
seq2  T-CTATACCAGAACCTACATCTACTGGCTCCCTCCACCAATGGGATACCC  98

seq1  AACTTAACAC-AAATA-TTCTTAATAAAGCAG-AAATAAAATACAT-CTC  136
      |||||||||| ||||| ||||||||||||||| ||||||||||||| |||
seq2  AACTTAACACAAAATATTTCTTAATAAAGCAGAAAATAAAATACATCCTC  148

seq1  TATTTCAGT-GTTACTAGATGACCCTGAACACACGATTTAAGATAATCGT  185
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTGGTTACTAGATGACCCTGAACACACGATTTAAGATAATCGT  198

seq1  ACAAAGA-GAATCACCAAGATGTATTTAGGTCTCATATATATATATATAA  234
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGGAATCACCAAGATGTATTTAGGTCTCATATATATATATATAA  248

seq1  AGATAATATAATAATAAGGGT-GGCAAGTACACATAGCTCAAATATTTTA  283
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGATAATATAATAATAAGGGTGGGCAAGTACACATAGCTCAAATATTTTA  298

seq1  TTTACTTAAACTAAGTGGAGATTTTGTTATGCGCTACACTCAGCTCTAAG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAAACTAAGTGGAGATTTTGTTATGCGCTACACTCAGCTCTAAG  348

seq1  TCCATTTTGCAACACCAAGAAACACATGCACAGATTTGCAGTGGCTCTGC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGCAACACCAAGAAACACATGCACAGATTTGCAGTGGCTCTGC  398

seq1  AATACATTTGCAAACAGCAGCGCAGGCTTTCTCCTTGCAGGTGACAGGCT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTGCAAACAGCAGCGCAGGCTTTCTCCTTGCAGGTGACAGGCT  448

seq1  CTCCAAGGATCCGGAGCCTTATTCCCAAGGTGAAACTTACTTGCATTGTC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGATCCGGAGCCTTATTCCCAAGGTGAAACTTACTTGCATTGTC  498

seq1  ACTGTCTGTTCACTTAATTGCTGTCATTTTTTGTAGTTTTTAAGACATAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGTTCACTTAATTGCTGTCATTTTTTGTAGTTTTTAAGACATAG  548

seq1  GAAAGAATTTAAAAAAAAAAAAATCACAAGACCAAGGTCCCTGAAGACGG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTTAAAAAAAAAAAAATCACAAGACCAAGGTCCCTGAAGACGG  598

seq1  CATTTTGAGGGGAAGGAGAATGCTATGTATTTTTTTTTTTCTCAATTTGC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGGGGAAGGAGAATGCTATGTATTTTTTTTTTTCTCAATTTGC  648

seq1  AGACTCTTTCATGGACAGTGACTTTGACTCTACCTGTGTCTATTGCTCTC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTCATGGACAGTGACTTTGACTCTACCTGTGTCTATTGCTCTC  698

seq1  TAGCCATTTTAATAGCATGCTAGCTTTCTTTTCTACTGTAGAGAACCTAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTTTAATAGCATGCTAGCTTTCTTTTCTACTGTAGAGAACCTAT  748

seq1  CATTTCTAATTAATATTGACTCCACTGCCCTTCAGATTTGCTAACAGTAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAATTAATATTGACTCCACTGCCCTTCAGATTTGCTAACAGTAT  798

seq1  CTCGATCACATAACTTTAGATGTGTTTCCTAGTTAAGACCAAGTACAATC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCACATAACTTTAGATGTGTTTCCTAGTTAAGACCAAGTACAATC  848

seq1  AATGGTTCCTATAGCCACCACTCTGCAACACACAGAGGCGAAGTTGAATC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTCCTATAGCCACCACTCTGCAACACACAGAGGCGAAGTTGAATC  898

seq1  CCTACTGTCACCTCTTTTCTATTGTGATACATTATGGTGGCATTTTAGTC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTCACCTCTTTTCTATTGTGATACATTATGGTGGCATTTTAGTC  948

seq1  AAGTCTTTTATGTCCACAATCAATAGCAAAAATCAACAGCACAACACATC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTATGTCCACAATCAATAGCAAAAATCAACAGCACAACACATC  998

seq1  TGGAACCTTGTTTGTCAAGATCTTTAACAGAATCTGTAACTAAATCAGAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTTGTTTGTCAAGATCTTTAACAGAATCTGTAACTAAATCAGAG  1048

seq1  CACAGGTGTTTTCCCTCTCTCCTTCCATTTCCTTTCTATTCATCTCTTCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTTTTCCCTCTCTCCTTCCATTTCCTTTCTATTCATCTCTTCT  1098

seq1  GAATTC  1089
      ||||||
seq2  GAATTC  1104


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