BAC Information

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BAC

Clone NameB6Ng01-278D23
Chromosome8 (Build37)2 (Build37)
Map Location 66,610,959 - 66,611,242124,224,576 - 124,225,695
singlet/doubletsingletsinglet
Overlap geneTll1
Upstream geneSpock3, LOC384831, EG244495
Downstream geneLOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278D23.bB6Ng01-278D23.g
ACCGA078543GA078544
length6891,108
definitionB6Ng01-278D23.b B6Ng01-278D23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,610,959 - 66,611,242)(124,224,576 - 124,225,695)
sequence
gaattctctctctctctctctctctctttctttctttctttctttctttc
tttctttctttctttctttctttctctctctctctctctctctctctctc
tctttctttcttttttctttcttcctttctttctttctttcttctttttt
ttaaagcatgttcttttaaaaatacattgctcttggggagcaatgttgta
tatggaaggagttagaagacaggtatggacacttcctaccctacacctgc
cctttccatcagtagcaacttacatcagcatagtgcacttactattgtta
gagtgactctaagatttagctactagccaacatctacagcctagatgtcc
acagctttcatctaatcttttcctgctctaggatcagggtctaggatctt
catggacaccatgtacatgaagtctgtgtgtgtttgtgttctggtctgtg
ttgttctcttaagtttgcctaatgttgatgaccttgaatgtttttgaagg
atacttatgtcagacagttttgtttaaatgtacctttggggctggtgaga
tgactcagagggtgtggtagtttgtatatgcttggctcttggagtggcac
tatcaggaggtgtggccttgttgggtaggtgtggccttgttggagtaggt
gtgtcactgttggagtgggctttaagaccctcattctag
gaattcagatgcaggttctctggtctttgttttcatggactgctaggaaa
ggggcttccagaggtaaggcacaaagaaagatgctgccctttcacctctg
gcctgcagtggagatgaaaagaatcatatggaacaaaaatattaaaagct
atgcagtaattggtaaggcctgtgacccgaactatgtggctgtgacagga
acaggtcacaccatctttgaaaggttagcctcttctacctccgtaaatga
aaacaaatccccagactatttcctgtcatagaaatgctcactgggacgtg
aaatgtatcttgacgctaccttcatgtaccaacactgttctgcctgctac
catccctgcatcctgtgaccctcaccttagatccacaaaacatcccacct
gagagtgagaactatttgtctcaggtggaagtcaatctcaccgtgatttc
cttggacggaccaatgagactgggaaagattatgacactttggtctcctt
cgaccacccagtttcatctttgtttaaagcctagagcgctttgtgttttt
gccatgacatttgatgtaaaatatcagtaattacattggtttgtgttttg
atagacaagagatgtcaagtacggtttcctgctttgagtagtatctatat
attttgagtaatataatacaaaagtctgcatcagccagagttttaaaatc
tcaaattacattttggacatcttggggaagagtagctttcattatgaaca
aagatggaattctaatgttctctgctattacatctattatgagagaaatg
gtttttttctgtgttgattttccttgaagtaaacccgcaccttggtcact
attcatcatgctgacttttaattccaagtctaagctgcactttaccaggt
agagaaaagaaagtgatttaggctccagcagatccctggacatctgctgc
tcctggagagactcaagtcacctgggtgagctcaggaaggaggagggctt
acgtagcagctgccctgtgctagagcacataaatgacagtgcagtcctgg
gtccttagtatgggaatgtaatcatacaggacttcaatgaggaataagtg
tgcctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_66610959_66611242
seq2: B6Ng01-278D23.b_51_255

seq1  --TCTCTCTTTCTCTCTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTC  48
        ||||||| ||||||||| ||||||| ||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50

seq1  TTTCTTTCTTTCTTTCTTT-TCTTCCTTTGATGAGGGTAGGTAGTATAGT  97
      ||||||||||||||||||| |||  || |                     
seq2  TTTCTTTCTTTCTTTCTTTCTCTCTCTCT---------------------  79

seq1  AGAATTGCTATATAAAAGAAAGTTACACTATGGATTATTGATTATGGGAG  147
          |  || | |         |  | || |   || ||  ||       
seq2  ---CTCTCTCTCT--------CTCTCTCTCT---TTCTTTCTT-------  108

seq1  AGATGGAAACTATTCAAACAGGTTCTAATCTTTGAAATCCCTTCAAACAA  197
                | |||   |   |||   |||||       |||       
seq2  ----------TTTTCTTTC---TTCCTTTCTTT-------CTT-------  131

seq1  CATGGATGTTTTTTCTAGTTAGATGGTTCTCTTCAA--ATATTCATTAAA  245
            | ||| ||||          || | || ||  || ||| || ||
seq2  ------TCTTTCTTCT----------TTTTTTTAAAGCATGTTCTTTTAA  165

seq1  TTGCGAAATAAAATGTAAGTGG------ATGTTGTATATGGAAGG  284
           ||||| | ||    |||      |||||||||||||||||
seq2  -----AAATACATTGCTCTTGGGGAGCAATGTTGTATATGGAAGG  205

seq1: chr2_124224576_124225695
seq2: B6Ng01-278D23.g_66_1173

seq1  GAATTCAGATGCAGGTTCTCTGGTCTTTGTTTTCATGGACTGCTAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGCAGGTTCTCTGGTCTTTGTTTTCATGGACTGCTAGGAAA  50

seq1  GGGGCTTCCAGAGGTAAGGCACAAAGAAAGATGCTGCCCTTTCACCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCCAGAGGTAAGGCACAAAGAAAGATGCTGCCCTTTCACCTCTG  100

seq1  GCCTGCAGTGGAGATGAAAAGAATCATATGGAACAAAAATATTAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGTGGAGATGAAAAGAATCATATGGAACAAAAATATTAAAAGCT  150

seq1  ATGCAGTAATTGGTAAGGCCTGTGACCCGAACTATGTGGCTGTGACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAATTGGTAAGGCCTGTGACCCGAACTATGTGGCTGTGACAGGA  200

seq1  ACAGGTCACACCATCTTTGAAAGGTTAGCCTCTTCTACCTCCGTAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCACACCATCTTTGAAAGGTTAGCCTCTTCTACCTCCGTAAATGA  250

seq1  AAACAAATCCCCAGACTATTTCCTGTCATAGAAATGCTCACTGGGACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCCCCAGACTATTTCCTGTCATAGAAATGCTCACTGGGACGTG  300

seq1  AAATGTATCTTGACGCTACCTTCATGTACCAACACTGTTCTGCCTGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATCTTGACGCTACCTTCATGTACCAACACTGTTCTGCCTGCTAC  350

seq1  CATCCCTGCATCCTGTGACCCTCACCTTAGATCCACAAAACATCCCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGCATCCTGTGACCCTCACCTTAGATCCACAAAACATCCCACCT  400

seq1  GAGAGTGAGAACTATTTGTCTCAGGTGGAAGTCAATCTCACCGTGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGAACTATTTGTCTCAGGTGGAAGTCAATCTCACCGTGATTTC  450

seq1  CTTGGACGGACCAATGAGACTGGGAAAGATTATGACACTTTGGTCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACGGACCAATGAGACTGGGAAAGATTATGACACTTTGGTCTCCTT  500

seq1  CGACCACCCAGTTTCATCTTTGTTTAAAGCCTAGAGCGCTTTGTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCACCCAGTTTCATCTTTGTTTAAAGCCTAGAGCGCTTTGTGTTTTT  550

seq1  GCCATGACATTTGATGTAAAATATCAGTAATTACATTGGTTTGTGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGACATTTGATGTAAAATATCAGTAATTACATTGGTTTGTGTTTTG  600

seq1  ATAGACAAGAGATGTCAAGTACGGTTTCCTGCTTTGAGTAGTATCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAGAGATGTCAAGTACGGTTTCCTGCTTTGAGTAGTATCTATAT  650

seq1  ATTTTGAGTAATATAATACAAAAGTCTGCATCAGCCAGAGTTTTAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGTAATATAATACAAAAGTCTGCATCAGCCAGAGTTTTAAAATC  700

seq1  TCAAATTACATTTTGGACATCTTGGGGAAGAGTAGCTTTCATTATGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTACATTTTGGACATCTTGGGGAAGAGTAGCTTTCATTATGAACA  750

seq1  AAGATGGAATTCTAATGTTCTCTGCTATTACATCTATTATGAGAGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAATTCTAATGTTCTCTGCTATTACATCTATTATGAGAGAAATG  800

seq1  G-TTTTTTCTGTGTTGATTTTCCTTGAAGTAAACCCGCACCTTGGTCACT  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCTGTGTTGATTTTCCTTGAAGTAAACCCGCACCTTGGTCACT  850

seq1  ATTCATCATGCTGACTTTTAATTCCAAGTCTAAGCTGCACTTTACCAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCATGCTGACTTTTAATTCCAAGTCTAAGCTGCACTTTACCAGGT  900

seq1  AGAG-AAAGAAAGTGATTTAGGCTCCAGCAGATCCCTGGACATCTGCTGC  948
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGAAAGTGATTTAGGCTCCAGCAGATCCCTGGACATCTGCTGC  950

seq1  TCCTGGAGAGACTCCAAAGTCACCTGGGTGAGCTCAGGGAAGGAGGAAGG  998
      ||||||||||||||  |||||||||||||||||||| ||||||||| |||
seq2  TCCTGGAGAGACTC--AAGTCACCTGGGTGAGCTCA-GGAAGGAGG-AGG  996

seq1  GCTTTACGGTAGCCAGCTGCCCTGTGCTAGAGCACCATAAATGACCAAGT  1048
      || |||| |||| ||||||||||||||||||||| ||||||||||  || 
seq2  GC-TTAC-GTAG-CAGCTGCCCTGTGCTAGAGCA-CATAAATGAC--AG-  1039

seq1  TGCAGTCCCTGGGTCTTTAGTATGGGGATTGTAATCAATACAGAATTTCC  1098
      |||||| |||||||| ||||||| |||| ||||||| |||||| | ||| 
seq2  TGCAGT-CCTGGGTCCTTAGTAT-GGGAATGTAATC-ATACAGGACTTCA  1086

seq1  ATGAAG-ATAAGTGTGCCCTGTA  1120
      |||| | ||||||||| ||||||
seq2  ATGAGGAATAAGTGTG-CCTGTA  1108