BAC Information

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BAC

Clone NameB6Ng01-278J23
Chromosome8 (Build37)
Map Location 83,243,056 - 83,380,174
singlet/doubletdoublet
Overlap geneSmarca5, Gab1, LOC666237
Upstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278J23.bB6Ng01-278J23.g
ACCGA078817GA078818
length4691,102
definitionB6Ng01-278J23.b B6Ng01-278J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,379,700 - 83,380,174)(83,243,056 - 83,244,158)
sequence
cttctgtagatcaggccagacttgaacttttgagagatcgacctgctctg
cctcctcccaagtgctgggattacaggtgtgaaataccacacccagattt
ttaactttaattttttaaaagtatcttaggagatatttggtaagttgacc
tttgtccagcaggtttgaagctttttctgggaggcagactttcttctggg
aggttttgtgtgtgtgtgtgttgtgcgggtgcctatgtaaacccataaat
gcttctaccaggacagacagggtaaactatggcccctgtagagtgatgct
cacattataaagatgccatatctgtagcctgggatctgtgtctgtccttg
acacgtgatcaagaccaaaactttgggttctaatattagaattgaaagag
aaggcttctagatgtgttcatttgtactgttttgtttgtttgtttttgtt
tgtgtgtgtgtgtgtgggg
gaattcagaatactgtaagtagaaatacttttgagtacatgtaaataata
tttaagtaaatatttttaaattcataaaagaaaataacaggaacacaaca
tcactgtctaacaaagtatctgggaaaggtgtatgtaggaaaggcattcc
tggtatcttatgaaaaagatgaaatttctaggaaacctacatgaagttaa
aatggtcgctactctgcatgtttatcattttctataagaatttaagccta
aaattaagggaagaggatttggctgaaatttttagatctttttaaacatt
taacatttcaactttaaaaactgttagaatagacatttcaaaatgttgta
tttcatcctcttaattctagaatttttaaagtcttcattactttacaatt
aaacgccagtaatatagataccttgttctttcagtttagggagtagcttg
tctaacaccaccatcttgccactgttggtaactagatgcatatctgttgt
gtacggtggaccaggttcagctccatcgaagagataaggatgattgcagc
atttcctcaactgcatcaaaatgttcaatagcctcattttgtccatcttc
cctgctgagtttaatatgtctatatctttcattaatatccgagtatacct
attaaaaagaaaaattgtttaatatgcctaccacattgcatacttaatcc
cctcacccatcccaaccacaaaatatttaataatttgaaaaaccactgcc
tgaaatttgcttccaatggtctaggaataaactggtataacagagactta
aaaagtttcccatgtttatacaaaagcaaaaagcaaaaaaaaaaaaaagt
atttctcagcttatgggggtgatgatgcatgaaaaaacatgaatctagga
cttgggtgcatgttaaacactttaacaaatgtactgcagcttggagccat
catttttttggttggttggtttcatggatctaatctgtctattttgtctt
ccatgactgggcagcaaaatgctgtactttttaataacaggaaattatga
acttggggcaattaaaagagcgccgagcagtgtggagcactactttaatc
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83379700_83380174
seq2: B6Ng01-278J23.b_48_522 (reverse)

seq1  CCCCACACACACACACACAAACAAAAACAAACAAACAAAACAGTACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACACACACACACAAACAAAAACAAACAAACAAAACAGTACAAAT  50

seq1  GAACACATCTAGAAGCCTTCTCTTTCAATTCTAATATTAGAACCCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATCTAGAAGCCTTCTCTTTCAATTCTAATATTAGAACCCAAAGT  100

seq1  TTTGGTCTTGATCACGTGTCAAGGACAGACACAGATCCCAGGCTACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTGATCACGTGTCAAGGACAGACACAGATCCCAGGCTACAGAT  150

seq1  ATGGCATCTTTATAATGTGAGCATCACTCTACAGGGGCCATAGTTTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCTTTATAATGTGAGCATCACTCTACAGGGGCCATAGTTTACCC  200

seq1  TGTCTGTCCTGGTAGAAGCATTTATGGGTTTACATAGGCACCCGCACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCTGGTAGAAGCATTTATGGGTTTACATAGGCACCCGCACAAC  250

seq1  ACACACACACACAAAACCTCCCAGAAGAAAGTCTGCCTCCCAGAAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAAAACCTCCCAGAAGAAAGTCTGCCTCCCAGAAAAAGC  300

seq1  TTCAAACCTGCTGGACAAAGGTCAACTTACCAAATATCTCCTAAGATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCTGCTGGACAAAGGTCAACTTACCAAATATCTCCTAAGATACT  350

seq1  TTTAAAAAATTAAAGTTAAAAATCTGGGTGTGGTATTTCACACCTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTAAAGTTAAAAATCTGGGTGTGGTATTTCACACCTGTAAT  400

seq1  CCCAGCACTTGGGAGGAGGCAGAGCAGGTCGATCTCTCAAAAGTTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGAGGCAGAGCAGGTCGATCTCTCAAAAGTTCAAGT  450

seq1  CTGGCCTGATCTACAGAAGGAATTC  475
      |||||||||||||||||||||||||
seq2  CTGGCCTGATCTACAGAAGGAATTC  475

seq1: chr8_83243056_83244158
seq2: B6Ng01-278J23.g_69_1170

seq1  GAATTCAGAATACTGTAAGTAGAAATACTTTTGAGTACATGTAAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATACTGTAAGTAGAAATACTTTTGAGTACATGTAAATAATA  50

seq1  TTTAAGTAAATATTTTTAAATTCATAAAAGAAAATAACAGGAACACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAAATATTTTTAAATTCATAAAAGAAAATAACAGGAACACAACA  100

seq1  TCACTGTCTAACAAAGTATCTGGGAAAGGTGTATGTAGGAAAGGCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTAACAAAGTATCTGGGAAAGGTGTATGTAGGAAAGGCATTCC  150

seq1  TGGTATCTTATGAAAAAGATGAAATTTCTAGGAAACCTACATGAAGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTTATGAAAAAGATGAAATTTCTAGGAAACCTACATGAAGTTAA  200

seq1  AATGGTCGCTACTCTGCATGTTTATCATTTTCTATAAGAATTTAAGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCGCTACTCTGCATGTTTATCATTTTCTATAAGAATTTAAGCCTA  250

seq1  AAATTAAGGGAAGAGGATTTGGCTGAAATTTTTAGATCTTTTTAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGGGAAGAGGATTTGGCTGAAATTTTTAGATCTTTTTAAACATT  300

seq1  TAACATTTCAACTTTAAAAACTGTTAGAATAGACATTTCAAAATGTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTCAACTTTAAAAACTGTTAGAATAGACATTTCAAAATGTTGTA  350

seq1  TTTCATCCTCTTAATTCTAGAATTTTTAAAGTCTTCATTACTTTACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTCTTAATTCTAGAATTTTTAAAGTCTTCATTACTTTACAATT  400

seq1  AAACGCCAGTAATATAGATACCTTGTTCTTTCAGTTTAGGGAGTAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCAGTAATATAGATACCTTGTTCTTTCAGTTTAGGGAGTAGCTTG  450

seq1  TCTAACACCACCATCTTGCCACTGTTGGTAACTAGATGCATATCTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACCACCATCTTGCCACTGTTGGTAACTAGATGCATATCTGTTGT  500

seq1  GTACGGTGGACCAGGTTCAGCTCCATCGAAGAGATAAGGATGATTGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGTGGACCAGGTTCAGCTCCATCGAAGAGATAAGGATGATTGCAGC  550

seq1  ATTTCCTCAACTGCATCAAAATGTTCAATAGCCTCATTTTGTCCATCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCAACTGCATCAAAATGTTCAATAGCCTCATTTTGTCCATCTTC  600

seq1  CCTGCTGAGTTTAATATGTCTATATCTTTCATTAATATCCGAGTATACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAGTTTAATATGTCTATATCTTTCATTAATATCCGAGTATACCT  650

seq1  ATTAAAAAGAAAAATTGTTTAATATGCCTACCACATTGCATACTTAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGAAAAATTGTTTAATATGCCTACCACATTGCATACTTAATCC  700

seq1  CCTCACCCATCCCAACCACAAAATATTTAATAATTTGAAAAACCACTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCATCCCAACCACAAAATATTTAATAATTTGAAAAACCACTGCC  750

seq1  TGAAATTTGCTTCCAATGGTCTAGGAATAAACTGGTATAACAGAGACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGCTTCCAATGGTCTAGGAATAAACTGGTATAACAGAGACTTA  800

seq1  AAAAGTTTCCCATGTTTATACAAAAGCAAAAAGCAAAAAAAAAAAAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCCCATGTTTATACAAAAGCAAAAAGCAAAAAAAAAAAAAAGT  850

seq1  ATTTCTCAGCTTAT-GTGGTGATGATGCATG-AAATACATGAATCTAGGA  898
      |||||||||||||| | |||||||||||||| ||| ||||||||||||||
seq2  ATTTCTCAGCTTATGGGGGTGATGATGCATGAAAAAACATGAATCTAGGA  900

seq1  CTT-GGTGCATGTTAAACACTTTAACAAATGTACTGCAGCTT-GAGCCAT  946
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGGGTGCATGTTAAACACTTTAACAAATGTACTGCAGCTTGGAGCCAT  950

seq1  CATTTTTTT-GTTTGTTTGTTTCATGGATCTTAATTCTGTCTATTTTGTC  995
      ||||||||| ||| ||| |||||||||||||  | |||||||||||||||
seq2  CATTTTTTTGGTTGGTTGGTTTCATGGATCT--AATCTGTCTATTTTGTC  998

seq1  TTCCATGACTGGCCAGCAAAATGCTGTACTTTTTAAATACA-GAAATTAT  1044
      |||||||||||| |||||||||||||||||||||||  ||| ||||||||
seq2  TTCCATGACTGGGCAGCAAAATGCTGTACTTTTTAATAACAGGAAATTAT  1048

seq1  GAACTTTGGGCAAAATTAAAAAGAAGCGCCGAGCAGTGGTGGAGCACACC  1094
      |||||| ||||  ||||||||   ||||||||||||| |||||||||  |
seq2  GAACTTGGGGC--AATTAAAA--GAGCGCCGAGCAGT-GTGGAGCACTAC  1093

seq1  TTTAATCCC  1103
      |||||||||
seq2  TTTAATCCC  1102