BAC Information

Click to search

BAC

Clone NameB6Ng01-278M21
Chromosome8 (Build37)
Map Location 101,781,569 - 101,936,179
singlet/doubletdoublet
Overlap geneCdh8
Upstream genenone
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M21.bB6Ng01-278M21.g
ACCGA078950GA078951
length1,0811,165
definitionB6Ng01-278M21.b B6Ng01-278M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,781,569 - 101,782,636)(101,935,008 - 101,936,179)
sequence
gaattcattctctgacttcctttagtgatggactataatgtggaactatg
aactgatataaaccctttcctccccagtagtgttatggtcatgttttatc
acaaaaaaacaaccctaagtttccaaataaaatatgtatattcacctcca
tgaatatacttgttggtggagccatagaaatcaatagatagatagataga
tagatagatagatagatagatagatagatagatagatagatatagataca
gtgaatcttgtatttcattccttaagttacaaacatattttcttgaatgt
ggattattaagttgcatccatgctttctgtaatacctcagatggcaaaaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaaaactgaaatctaataaaagaaagttccagtggagttgtggtcc
aaggaaatggaagcaaaacaaagtttagaggggagtcatggaaaaaatac
agaactcagacaaaatggaaaggaaaaatttgaatgtcaaaagaacattg
aaaggatggttttccttctggacaaaaagcagagacagttgtctgtacaa
gaaattccttgtcaaatcccagggcctgcaaccttgccactctgaggtat
aacttacaaatagcattcaaaacacacacacacacacacacacacacaca
cacacacacacacacacacacacacacaaacacactcacacacaaatgag
tgacacatcgagagttcccttcatccctaaattcctgcattgctctgagt
tatttgtgatcattttcacaaaatatttgcttttcttgcctttcatatct
catttcccagcctttttccacaattgccttcaaaccagagcataagaaaa
agcaactataccaaaaaccccagattttatcacaaggtatttctttggtt
ttgtttacaatgtcatcataacctatcagaaacctatggtcaagttcata
tactaacaaggtaattgcaacttggagaccaggataagcaaaataaaaca
acaacaaaacaaaaaaatcaaaccaaatttt

gaattcaatcaccatttccttgtcactgcatctgactttaaggtgtgtga
tttgtgcggacaatttgtcagacttgtattatgatcagtcttttaagaaa
tattgtctgcagggcatttaggacactgaggatttcacctagaatctttg
ctgtaattattctttggaacaatactttgcttttgatgggcaaaggccac
catctgatttagcaaggcttaattatccaaaggatgttagtactgtctcc
tttcattctccttgaaacttgagcgtcacagtttatttgtgctgagctgt
gggttcctatctctggaacctacttcagatgtaaccatgagcagaaaatt
agctggacctggtaacttcaaaaggtcagaaaagaaatgagttcaaggga
tgccatttagcttcctctcccatatgttgctgctgactaaatctccattg
ccacttcacaatataacactgataccaatactgtttccttttctgtcata
tcccaagcttttatttcctgagttttaaatgtcatgagctagtccctatc
ataaacatcactcaccttcttgcctgtaaatgtcctttttaaaaaaaaaa
aaaaaaaagttctgcttgtaggtaaaaatgtatagatgtgattttctgta
tcttttaaagaatggatcatgaggaaaaaaacaacaacacttgtattttc
cctgactgttcccattgctacggagagttttggatgctgagaatggctgg
tccagggccaagtattaagaaattaccagggactctgcttcccacttttc
ctgagcattttcatggccaggctgcagggtaaactatcatatgtaaagtg
tgataccagggtggacctttctacaactgtttctatggaaatttcataag
ctcctcctaactttattttttagaacacaacttttcccatttaaaaacag
tcgtttttattcatgttgcaacatcagcttttttctcaataaaaaataat
ttataggataatatgaataataaagtatgtgtagttcatgtcgtaactga
aagcgcatcctcaattagaatttggcatcacagatgcttataaactgtaa
tggccaaaagagctatattttattaggaagttttcaatgcagctactgtg
taactcagagtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101781569_101782636
seq2: B6Ng01-278M21.b_48_1128

seq1  GAATTCATTCTCTGACTTCCTTTAGTGATGGACTATAATGTGGAACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCTGACTTCCTTTAGTGATGGACTATAATGTGGAACTATG  50

seq1  AACTGATATAAACCCTTTCCTCCCCAGTAGTGTTATGGTCATGTTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATATAAACCCTTTCCTCCCCAGTAGTGTTATGGTCATGTTTTATC  100

seq1  ACAAAAAAACAACCCTAAGTTTCCAAATAAAATATGTATATTCACCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACAACCCTAAGTTTCCAAATAAAATATGTATATTCACCTCCA  150

seq1  TGAATATACTTGTTGGTGGAGCCATAGAAATCA----ATAGATAGATAGA  196
      |||||||||||||||||||||||||||||||||    |||||||||||||
seq2  TGAATATACTTGTTGGTGGAGCCATAGAAATCAATAGATAGATAGATAGA  200

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAGATACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAGATACA  250

seq1  GTGAATCTTGTATTTCATTCCTTAAGTTACAAACATATTTTCTTGAATGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTTGTATTTCATTCCTTAAGTTACAAACATATTTTCTTGAATGT  300

seq1  GGATTATTAAGTTGCATCCATGCTTTCTGTAATACCTCAGATGGCAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTAAGTTGCATCCATGCTTTCTGTAATACCTCAGATGGCAAAAA  350

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  400

seq1  AAAGAAAAACTGAAATCTAATAAAAGAAAGTTCCAGTGGAGTTGTGGTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACTGAAATCTAATAAAAGAAAGTTCCAGTGGAGTTGTGGTCC  450

seq1  AAGGAAATGGAAGCAAAACAAAGTTTAGAGGGGAGTCATGGAAAAAATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGGAAGCAAAACAAAGTTTAGAGGGGAGTCATGGAAAAAATAC  500

seq1  AGAACTCAGACAAAATGGAAAGGAAAAATTTGAATGTCAAAAGAACATTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGACAAAATGGAAAGGAAAAATTTGAATGTCAAAAGAACATTG  550

seq1  AAAGGATGGTTTTCCTTCTGGACAAAAAGCAGAGACAGTTGTCTGTACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGGTTTTCCTTCTGGACAAAAAGCAGAGACAGTTGTCTGTACAA  600

seq1  GAAATTCCTTGTCAAATCCCAGGGCCTGCAACCTTGCCACTCTGAGGTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTTGTCAAATCCCAGGGCCTGCAACCTTGCCACTCTGAGGTAT  650

seq1  AACTTACAAATAGCATTCAAAACACACACACACACACACACACACACACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAAATAGCATTCAAAACACACACACACACACACACACACACACA  700

seq1  CACACACACACACACACACACACACACAAACACACTCACACACAAATGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAAACACACTCACACACAAATGAG  750

seq1  TGACACATCGAGAGTT-CCTTCATCCCTAAATTCCTGCATTGCTCTGAGT  795
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGACACATCGAGAGTTCCCTTCATCCCTAAATTCCTGCATTGCTCTGAGT  800

seq1  TATTTGTGATCATTTTCACAAAATATTTGC-TTTCTTGCCTTTCATATCT  844
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATTTGTGATCATTTTCACAAAATATTTGCTTTTCTTGCCTTTCATATCT  850

seq1  CA-TTCCCAGCC-TTTTCCACAATTGCCTTCAAACCAGAGCATAGGAAAA  892
      || ||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CATTTCCCAGCCTTTTTCCACAATTGCCTTCAAACCAGAGCATAAGAAAA  900

seq1  AGCAACTATACCAAAAA-CCCAGA-TTTATCACAAGGTATTTCTTTGG-T  939
      ||||||||||||||||| |||||| ||||||||||||||||||||||| |
seq2  AGCAACTATACCAAAAACCCCAGATTTTATCACAAGGTATTTCTTTGGTT  950

seq1  TTGTTTACAAATGTCATCATAACCTATCAGAAACCTATGGTCAAGTTCAT  989
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAC-AATGTCATCATAACCTATCAGAAACCTATGGTCAAGTTCAT  999

seq1  ATACTAACAA-GTAATTGCAACTTGTAGA-CAGGATAAGCAAAAATAAAA  1037
      |||||||||| |||||||||||||| ||| |||||||||| |||||||||
seq2  ATACTAACAAGGTAATTGCAACTTGGAGACCAGGATAAGC-AAAATAAAA  1048

seq1  CAACAAACAAAC-AAAAAATCAAA-CAAATTTT  1068
      ||||||  |||| ||||||||||| ||||||||
seq2  CAACAACAAAACAAAAAAATCAAACCAAATTTT  1081


seq1: chr8_101935008_101936179
seq2: B6Ng01-278M21.g_65_1229 (reverse)

seq1  ACAGACTCTGAGTTACCCACACAGTGACTGGACAATTAGAACACTTTTCC  50
      ||||||||||||||    |||||||  ||| |    | ||| ||  ||||
seq2  ACAGACTCTGAGTT----ACACAGTAGCTGCA----TTGAAAAC--TTCC  40

seq1  TAATAAAATATAACTCTTCT-GCCA-TACAGTTTAATAGCATCCTGTGAT  98
      |||||||||||| ||||| | |||| |||||||||  ||||| |||||||
seq2  TAATAAAATATAGCTCTTTTGGCCATTACAGTTTATAAGCAT-CTGTGAT  89

seq1  GC--AAATCTAATTTGAGATGCGCTTTCAGTTTTACCACATTGAACTACA  146
      ||  || |||||||   |||||||||||||  |||| ||| |||||||||
seq2  GCCAAATTCTAATTGAGGATGCGCTTTCAG--TTACGACA-TGAACTACA  136

seq1  CCATACTTTA-TATTCATA-TATCCTATAAAATTATTTTTATTGGAGAAA  194
       ||||||||| |||||||| |||||||| |||||||||||  | ||||||
seq2  -CATACTTTATTATTCATATTATCCTAT-AAATTATTTTTTATTGAGAAA  184

seq1  AAGCCTGATGTTTGCAACATGAATAAAACGGACTGTTTTTAAATGGGAAA  244
      ||  |||||| |||||||||||||||||  ||||||||||||||||||||
seq2  AAAGCTGATG-TTGCAACATGAATAAAAACGACTGTTTTTAAATGGGAAA  233

seq1  AGTTGTG-TCT-AAAAATAAAGTTAGGA-GAGCTTATGAAATTTCCATAG  291
      ||||||| ||| |||||||||||||||| |||||||||||||||||||||
seq2  AGTTGTGTTCTAAAAAATAAAGTTAGGAGGAGCTTATGAAATTTCCATAG  283

seq1  AAACAGTTGTAG-AAGGTCCACCCTGGTATCACACTTTACATATGATAGT  340
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTGTAGAAAGGTCCACCCTGGTATCACACTTTACATATGATAGT  333

seq1  TTACCCTGCAGCCTGGCCATGAAAATGCTCAGGAAAAGTGGGAAGCAGAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGCAGCCTGGCCATGAAAATGCTCAGGAAAAGTGGGAAGCAGAG  383

seq1  TCCCTGGTAATTTCTTAATACTTGGCCCTGGACCAGCCATTCTCAGCATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTAATTTCTTAATACTTGGCCCTGGACCAGCCATTCTCAGCATC  433

seq1  CAAAACTCTCCGTAGCAATGGGAACAGTCAGGGAAAATACAAGTGTTGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCTCCGTAGCAATGGGAACAGTCAGGGAAAATACAAGTGTTGTT  483

seq1  GTTTTTTTCCTCATGATCCATTCTTTAAAAGATACAGAAAATCACATCTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCCTCATGATCCATTCTTTAAAAGATACAGAAAATCACATCTA  533

seq1  TACATTTTTACCTACAAGCAGAACTTTTTTTTTTTTTTTTTTAAAAAGGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTACCTACAAGCAGAACTTTTTTTTTTTTTTTTTTAAAAAGGA  583

seq1  CATTTACAGGCAAGAAGGTGAGTGATGTTTATGATAGGGACTAGCTCATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAGGCAAGAAGGTGAGTGATGTTTATGATAGGGACTAGCTCATG  633

seq1  ACATTTAAAACTCAGGAAATAAAAGCTTGGGATATGACAGAAAAGGAAAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAACTCAGGAAATAAAAGCTTGGGATATGACAGAAAAGGAAAC  683

seq1  AGTATTGGTATCAGTGTTATATTGTGAAGTGGCAATGGAGATTTAGTCAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGTATCAGTGTTATATTGTGAAGTGGCAATGGAGATTTAGTCAG  733

seq1  CAGCAACATATGGGAGAGGAAGCTAAATGGCATCCCTTGAACTCATTTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACATATGGGAGAGGAAGCTAAATGGCATCCCTTGAACTCATTTCT  783

seq1  TTTCTGACCTTTTGAAGTTACCAGGTCCAGCTAATTTTCTGCTCATGGTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACCTTTTGAAGTTACCAGGTCCAGCTAATTTTCTGCTCATGGTT  833

seq1  ACATCTGAAGTAGGTTCCAGAGATAGGAACCCACAGCTCAGCACAAATAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAGTAGGTTCCAGAGATAGGAACCCACAGCTCAGCACAAATAA  883

seq1  ACTGTGACGCTCAAGTTTCAAGGAGAATGAAAGGAGACAGTACTAACATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACGCTCAAGTTTCAAGGAGAATGAAAGGAGACAGTACTAACATC  933

seq1  CTTTGGATAATTAAGCCTTGCTAAATCAGATGGTGGCCTTTGCCCATCAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATAATTAAGCCTTGCTAAATCAGATGGTGGCCTTTGCCCATCAA  983

seq1  AAGCAAAGTATTGTTCCAAAGAATAATTACAGCAAAGATTCTAGGTGAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTATTGTTCCAAAGAATAATTACAGCAAAGATTCTAGGTGAAA  1033

seq1  TCCTCAGTGTCCTAAATGCCCTGCAGACAATATTTCTTAAAAGACTGATC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTGTCCTAAATGCCCTGCAGACAATATTTCTTAAAAGACTGATC  1083

seq1  ATAATACAAGTCTGACAAATTGTCCGCACAAATCACACACCTTAAAGTCA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAAGTCTGACAAATTGTCCGCACAAATCACACACCTTAAAGTCA  1133

seq1  GATGCAGTGACAAGGAAATGGTGATTGAATTC  1172
      ||||||||||||||||||||||||||||||||
seq2  GATGCAGTGACAAGGAAATGGTGATTGAATTC  1165


| Home | SequenceCutter | Blast | Download |