BAC Information

Click to search

BAC

Clone NameB6Ng01-279P24
Chromosome8 (Build37)
Map Location 12,894,869 - 13,042,153
singlet/doubletdoublet
Overlap geneMcf2l, F7, F10
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
Downstream geneProz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279P24.bB6Ng01-279P24.g
ACCGA079839GA079840
length1971,163
definitionB6Ng01-279P24.b B6Ng01-279P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,041,957 - 13,042,153)(12,894,869 - 12,896,017)
sequence
cacttattgaaaaaggcaattccttatctactgaacagttttatatttat
gtatatatgaatatatatacatactttaaacagatgcttaaaataaaaat
cctgcaattatggattctctcattagatataaaccattggtttggtagca
aagaattaaaggaatccttccttccttcctgccttccttccttcctt
gaattccatggcctgtgccctgaacagagctggcgcctccctagtgcata
agctcataatcatttggtcacagtggagccctgcctgtccgagctccctg
tcctgccttgtgaatccagggagcaggtccagatccggtttctttccagg
cagggaaagctgctggccagtcccaaggaggcctctgagatagcatgcca
agaaatgtcatctggggcatgtgtcaccatcttgcatcaggagaagggag
gtgtgtccatgacagatccactgctcctacccaccccctccaccatatct
cccattccccttttactcaggactgcacatctgccagtaccctgcttggg
agctggctgtgggcagaattccctgactaagtctctttgagaaggaagga
acctctgcatggagaggtatcagggcctccctccttagcagcaggcgtga
tggtgggggcaggcgatagcagcaaccccatggctatgaggacaaggggg
acatgctgagcagcctgggtaaggagctgcagtgagcccggggcctgggt
gtgtcactgagatgcctctgatgccataacagaacatctgctgtagaagc
tgtgctcaggactaaagccactgtcagagtcagcgctctccgtgggaggc
aggttcatccccatgacctggcttccttcctggcagctttctgaagcatc
gcccactgagaggcctgtccctgtcctggtcggtgaagctttgatgacga
gatagtagccacagcccagagaggagctttggggaccagagagtatgtct
gtatgtctacagaacggtcctgtgtccgaccagatgcagtactccttcac
agcagacaggtggctgtgtcccttttccttcagaaattaaaccccacttc
ccactttccggttaccttttatagtcaacttgacccaatctagaatcact
ggtggagaattgccgcttatgaggattgttctagatcagatttgcttatg
gcatgcctatgggagatgttcttgatgcctaaattgatgagagaccaaat
cccacaggtgggttgggctcattccccttgttgttctggtccctgaatgg
tacccattgggcagagaagccagacgcgatcatctacttgcttcagttac
ccgctgtgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13041957_13042153
seq2: B6Ng01-279P24.b_54_250 (reverse)

seq1  AAGGAAGGAAGGAAGGCAGGAAGGAAGGAAGGATTCCTTTAATTCTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGCAGGAAGGAAGGAAGGATTCCTTTAATTCTTTGC  50

seq1  TACCAAACCAATGGTTTATATCTAATGAGAGAATCCATAATTGCAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACCAATGGTTTATATCTAATGAGAGAATCCATAATTGCAGGATT  100

seq1  TTTATTTTAAGCATCTGTTTAAAGTATGTATATATATTCATATATACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAGCATCTGTTTAAAGTATGTATATATATTCATATATACATA  150

seq1  AATATAAAACTGTTCAGTAGATAAGGAATTGCCTTTTTCAATAAGTG  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAACTGTTCAGTAGATAAGGAATTGCCTTTTTCAATAAGTG  197

seq1: chr8_12894869_12896017
seq2: B6Ng01-279P24.g_67_1229

seq1  GAATTCCATGGCCTGTGCCCTGAACAGAGCTGGCGCCTCCCTAGTGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGCCTGTGCCCTGAACAGAGCTGGCGCCTCCCTAGTGCATA  50

seq1  AGCTCATAATCATTTGGTCACAGTGGAGCCCTGCCTGTCCGAGCTCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATAATCATTTGGTCACAGTGGAGCCCTGCCTGTCCGAGCTCCCTG  100

seq1  TCCTGCCTTGTGAATCCAGGGAGCAGGTCCAGATCCGGTTTCTTTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTGTGAATCCAGGGAGCAGGTCCAGATCCGGTTTCTTTCCAGG  150

seq1  CAGGGAAAGCTGCTGGCCAGTCCCAAGGAGGCCTCTGAGATAGCATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAGCTGCTGGCCAGTCCCAAGGAGGCCTCTGAGATAGCATGCCA  200

seq1  AGAAATGTCATCTGGGGCATGTGTCACCATCTTGCATCAGGAGAAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTCATCTGGGGCATGTGTCACCATCTTGCATCAGGAGAAGGGAG  250

seq1  GTGTGTCCATGACAGATCCACTGCTCCTACCCACCCCCTCCACCATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCATGACAGATCCACTGCTCCTACCCACCCCCTCCACCATATCT  300

seq1  CCCATTCCCCTTTTACTCAGGACTGCACATCTGCCAGTACCCTGCTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCCCTTTTACTCAGGACTGCACATCTGCCAGTACCCTGCTTGGG  350

seq1  AGCTGGCTGTGGGCAGAATTCCCTGACTAAGTCTCTTTGAGAAGGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTGTGGGCAGAATTCCCTGACTAAGTCTCTTTGAGAAGGAAGGA  400

seq1  ACCTCTGCATGGAGAGGTATCAGGGCCTCCCTCCTTAGCAGCAGGCGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCATGGAGAGGTATCAGGGCCTCCCTCCTTAGCAGCAGGCGTGA  450

seq1  TGGTGGGGGCAGGCGATAGCAGCAACCCCATGGCTATGAGGACAAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGCAGGCGATAGCAGCAACCCCATGGCTATGAGGACAAGGGGG  500

seq1  ACATGCTGAGCAGCCTGGGTAAGGAGCTGCAGTGAGCCCGGGGCCTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGAGCAGCCTGGGTAAGGAGCTGCAGTGAGCCCGGGGCCTGGGT  550

seq1  GTGTCACTGAGATGCCTCTGATGCCATAACAGAACATCTGCTGTAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTGAGATGCCTCTGATGCCATAACAGAACATCTGCTGTAGAAGC  600

seq1  TGTGCTCAGGACTAAAGCCACTGTCAGAGTCAGCGCTCTCCGTGGGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGGACTAAAGCCACTGTCAGAGTCAGCGCTCTCCGTGGGAGGC  650

seq1  AGGTTCATCCCCATGACCTGGCTTCCTTCCTGGCAGCTTTCTGAAGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATCCCCATGACCTGGCTTCCTTCCTGGCAGCTTTCTGAAGCATC  700

seq1  GCCCACTGAGAGGCCTGTCCCTGTCCTGGTCGGTGAAGCTTTGATGACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGAGAGGCCTGTCCCTGTCCTGGTCGGTGAAGCTTTGATGACGA  750

seq1  GATAGTAGCCACAGCCCAGAGAGGAGC-TTGGGGACCAGAGAGTATGTCT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATAGTAGCCACAGCCCAGAGAGGAGCTTTGGGGACCAGAGAGTATGTCT  800

seq1  GTATGTCTACAGAACGGTCCTGTGTCCGACCAGATGCAGTACTCC-TCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTATGTCTACAGAACGGTCCTGTGTCCGACCAGATGCAGTACTCCTTCAC  850

seq1  AGCAGACAGGTGGCTGTGTCCC-TTTCCTTCAGAAATTAAA-CCCACTTC  896
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  AGCAGACAGGTGGCTGTGTCCCTTTTCCTTCAGAAATTAAACCCCACTTC  900

seq1  CCAC-TTCCGGTTACCTTTAATAGTCAACTTGACCCAATCTAGAATCACT  945
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCACTTTCCGGTTACCTTTTATAGTCAACTTGACCCAATCTAGAATCACT  950

seq1  GGTGAAGAA-TGCCGC-TATGAGGGATTG-TCTAGATCAGATTTGCTATG  992
      |||| |||| |||||| ||||| |||||| |||||||||||||||||   
seq2  GGTGGAGAATTGCCGCTTATGA-GGATTGTTCTAGATCAGATTTGCTTAT  999

seq1  GGCATGCCTATGGGAGATG-TCTTGATG-CTAAA-TGATGAAGAAGACCA  1039
      ||||||||||||||||||| |||||||| ||||| ||||||   ||||||
seq2  GGCATGCCTATGGGAGATGTTCTTGATGCCTAAATTGATGA--GAGACCA  1047

seq1  AATCCAACA-GTGGG-TGGGCTCCATCCCC-TGT--GTCTGGGCCCTGAA  1084
      ||||| ||| ||||| |||||||  ||||| |||   ||||| |||||||
seq2  AATCCCACAGGTGGGTTGGGCTCATTCCCCTTGTTGTTCTGGTCCCTGAA  1097

seq1  TGGTACACA-TGGGCAGAG-AGGCAGAGCGGATACAACTAACTGCTTCAG  1132
      |||||| || ||||||||| || ||||   ||| || |||  ||||||||
seq2  TGGTACCCATTGGGCAGAGAAGCCAGACGCGAT-CATCTACTTGCTTCAG  1146

seq1  GTACCCGCTGTGACTTC  1149
       ||||||||||||||||
seq2  TTACCCGCTGTGACTTC  1163