BAC Information

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BAC

Clone NameB6Ng01-280J12
Chromosome8 (Build37)
Map Location 101,019,681 - 101,020,792
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280J12.bB6Ng01-280J12.g
ACCGA080282GA080283
length9461,098
definitionB6Ng01-280J12.b B6Ng01-280J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccctatttttaatggggttatttgattt
tctggagtccaccttctcgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgacttacagaagctttgcaattttat
gaggtcccatttgtcgattcttgatcttaccgcataagccattgctgttc
tattcaggaatttttccactgtgcccatatcttcgaggattttccccact
ttctcctctataagtttcactgtctctggttttatgtggagttccttgat
ccactttgatttgaccttaatacaaggatataggaatggatcaattcgca
gtcttctgcatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactagatggcttaagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttatctgtccctgtaccagtaccatgcaggttttatcacaattgct
ctgtagtgcacctttaggtcagacatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctagtttttttttttttttgttatt
ccagatgaatttgcagattgccctttctaattcgttgaagaattgagttg
gaattttgggtggggatggcattgaatctgaaaaaaatgttcagcatcct
taatcatcaaggaaatgccaattcaaagcaacccttgagattctacctca
ccaccagtcagaatggctaaggattaaaattcagtgacagcagatgctgg
tgaagatgtgagaaaatagactactcctccatgtttgtgggattgc

gaattcttgctgttgttaaggaccaaagtttgtttcccaccacccaactc
agactgctcacaacagcctgtgactgaagtactagggaatccagtgactt
cccctgaattttgtggacacatgaacatgagtgtcatacactcatatgaa
tatgtaacatgataattattgttaaagctcttggaatacacacataccca
ctaaagtatcttagaatgctagaattattatataattgtacttttccttt
tagggatttcttcagtgccccactttcctgttccagcaatcataagatgc
gctttaaaaagatatatgtatattgttttcaagaaatgtttccttctact
gtcctaaaaaatacatatataagaaatacagatacaaaagtacacttttc
agttcataaaaacagcactctaatgagacagatgaaaatacgaattgctt
ctaatgagctcagaattacatacacttctcttggtttaattttctaagtg
ttcatagatattttttgttgtgcttattataaaacaagaagtggccacta
ggctgtgataaaccaatttgtgagattaaagtgctgaacttgaacggttt
cattaaattctaagtcatgagttgaaatcggaattttaaaagcctccttt
tcttatttacacgcgagccaccacatttgcagaggcagaaagtggcgcca
attaatgttgagtctgttgatgaggtctagaaggaccccttagcaatgct
gtggtttttaccatacaaccccttcatctttgcacaatacccttccccca
ccaaaacgcaaagcttaagttttaataacattcagcctcagcatctcgtc
acactcacaactctggtggctaaaattcaatgccatgtttgaaaataagc
acatatacttttttagcatcttgtacctgggaagttgtgcaaaccacctt
atcacattgctcagaattgataacggaaacagctctgattctatatagag
atgggcagatacagtgactattatttgtatgcaaacaacgcatctagtat
agttgtgctactagaaatatgcttctcaaaacctgcaaggtgtaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101019681_101020792
seq2: B6Ng01-280J12.g_69_1166

seq1  GAATTCTTGCTGTTGTTAAGGACCAAAGTTTGTTTCCCACCACCCAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGTTGTTAAGGACCAAAGTTTGTTTCCCACCACCCAACTC  50

seq1  AGACTGCTCACAACAGCCTGTGACTGAAGTACTAGGGAATCCAGTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTCACAACAGCCTGTGACTGAAGTACTAGGGAATCCAGTGACTT  100

seq1  CCCCTGAATTTTGTGGACACATGAACATGAGTGTCATACACTCATATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAATTTTGTGGACACATGAACATGAGTGTCATACACTCATATGAA  150

seq1  TATGTAACATGATAATTATTGTTAAAGCTCTTGGAATACACACATACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACATGATAATTATTGTTAAAGCTCTTGGAATACACACATACCCA  200

seq1  CTAAAGTATCTTAGAATGCTAGAATTATTATATAATTGTACTTTTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTATCTTAGAATGCTAGAATTATTATATAATTGTACTTTTCCTTT  250

seq1  TAGGGATTTCTTCAGTGCCCCACTTTCCTGTTCCAGCAATCATAAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTTCTTCAGTGCCCCACTTTCCTGTTCCAGCAATCATAAGATGC  300

seq1  GCTTTAAAAAGATATATGTATATTGTTTTCAAGAAATGTTTCCTTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAAAGATATATGTATATTGTTTTCAAGAAATGTTTCCTTCTACT  350

seq1  GTCCTAAAAAATACATATATAAGAAATACAGATACAAAAGTACACTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAAAATACATATATAAGAAATACAGATACAAAAGTACACTTTTC  400

seq1  AGTTCATAAAAACAGCACTCTAATGAGACAGATGAAAATACGAATTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAAAAACAGCACTCTAATGAGACAGATGAAAATACGAATTGCTT  450

seq1  CTAATGAGCTCAGAATTACATACACTTCTCTTGGTTTAATTTTCTAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGCTCAGAATTACATACACTTCTCTTGGTTTAATTTTCTAAGTG  500

seq1  TTCATAGATATTTTTTGTTGTGCTTATTATAAAACAAGAAGTGGCCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGATATTTTTTGTTGTGCTTATTATAAAACAAGAAGTGGCCACTA  550

seq1  GGCTGTGATAAACCAATTTGTGAGATTAAAGTGCTGAACTTGAACGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATAAACCAATTTGTGAGATTAAAGTGCTGAACTTGAACGGTTT  600

seq1  CATTAAATTCTAAGTCATGAGTTGAAATCGGAATTTTAAAAGCCTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTCTAAGTCATGAGTTGAAATCGGAATTTTAAAAGCCTCCTTT  650

seq1  TCTTATTTACACGCGAGCCACCACATTTGCAGAGGCAGAAAGTGGCGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTACACGCGAGCCACCACATTTGCAGAGGCAGAAAGTGGCGCCA  700

seq1  ATTAATGTTGAGTCTGTTGATGAGGTCTAGAAGGACCCCTTAGCAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTGAGTCTGTTGATGAGGTCTAGAAGGACCCCTTAGCAATGCT  750

seq1  GTGGTTTTTACCATACAACCCCTTCATCTTTGCACAATACCCTTCCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTTACCATACAACCCCTTCATCTTTGCACAATACCCTTCCCCCA  800

seq1  CCAAAACGCAAAGCTTAAGTTTTAATAACATTCAGCCTCAGCATCTCGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACGCAAAGCTTAAGTTTTAATAACATTCAGCCTCAGCATCTCGTC  850

seq1  ACACTCACAACTCTGGTGGCTAAAATTCAATGCCATGTTTGAAAATAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACAACTCTGGTGGCTAAAATTCAATGCCATGTTTGAAAATAAGC  900

seq1  ACATATACTTTTTTAGCATCTTGTACCTGGGAAGTTGTGCAAACCACCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACTTTTTTAGCATCTTGTACCTGGGAAGTTGTGCAAACCACCTT  950

seq1  ATCACATTGCTCAAGAATTGATAACGGAAACAAGCTCTGATTCTAATATA  1000
      |||||||||||| |||||||||||||||||| |||||||||||| |||||
seq2  ATCACATTGCTC-AGAATTGATAACGGAAAC-AGCTCTGATTCT-ATATA  997

seq1  GAGATGGGCAGGATAACAGTGACTATTATTTGTATGCAAACAACGGCATC  1050
      |||||||||| ||| ||||||||||||||||||||||||||||| |||||
seq2  GAGATGGGCA-GAT-ACAGTGACTATTATTTGTATGCAAACAAC-GCATC  1044

seq1  TAGTTAATTAGTGGTGCTACTTAGAAATTATGGGTTTCTCAAAAAACTGC  1100
      ||||    |||| ||||||| |||||| |||  | ||||| |||| ||||
seq2  TAGT---ATAGTTGTGCTAC-TAGAAA-TAT--GCTTCTC-AAAACCTGC  1086

seq1  AGGGTGTAATAA  1112
      | ||||||||||
seq2  AAGGTGTAATAA  1098


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