BAC Information

Click to search

BAC

Clone NameB6Ng01-280L14
Chromosome8 (Build37)
Map Location 108,255,666 - 108,385,870
singlet/doubletdoublet
Overlap geneGfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2
Upstream geneCes6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik
Downstream geneEdc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L14.bB6Ng01-280L14.g
ACCGA080380GA080381
length1,010945
definitionB6Ng01-280L14.b B6Ng01-280L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,384,869 - 108,385,870)(108,255,666 - 108,256,610)
sequence
gaattcaacctgacaagagatgctttctgccaagtcctgggagcttttct
ccactagttcctaatcatcactcaaaacagaagtgcattctcaaagcctg
cctactagtaactagtcaaatacactacatctccaggaattcaaggtgat
ggatgacctgaggtgccattgctaaggtactttctctagacccatccagc
ttcttgactgttcacaggcagccctagcacacgtgaagagaaagcagaca
tcgtgacttctagttctagatctacaaaacaacttcaaaaggcaaaaaca
gtctaagccagtgccataggcacaaggccccttccaccttctctgggctc
aaaaacctcaagcatggagtccatttcttcatgaattaaatccgacctca
tcacttcagtaaggagtcatcttcctgctaactctaggaggttctaacgt
actttagaattgggccctgactgagaaatctaacaaaaacactggaggct
cacacaacccaccccagagctggagtctagtcatggataagattggagct
gcctctccaaagatactaggtccttattttccaggactagctagaggtaa
agtcccacgaggcatcccctcccaccccagaatccctgcccttgtcctcc
atgctggacactgcagcaccggttctaccgaggtagaggttaagtttcgt
gcactcccagcaggcaatcaagcagagaagcgttcacctacatcctagcc
gggctatggtttggaaccgggcaatggtcccaagccccagcagcggcagg
agggccacccttacccatgctggctctggagcgagctgggtggcgttgcc
catccccggatcttcgccggcgggttggtgggacgtgggtctgggatcgg
cccgccaaccttgcctgcagaggtttgcaggatttcgagccagccaggca
aggcccacacagggccgggccctgagagctattcttgatcgttcgggaca
aaaagaaaaa
gaattcaaatcctcaacacctatataaaaagccagctatggctttgtatg
cctgaaagcccagcatttgggatgcagagacaggtggttcccaagagctt
gctggccagacagcctagtcaaaatggtagcttctggttgggtgcagatc
ccaagggaataagataaagagtaattatgtggccacctggtgtatttctc
tggcctccatgcccacatacacagatgtgggcacctacactcttacatgt
atgggccataccctcctacacacaaatcaaacaaatgaacagctgtgtgg
gagcgcaaaggtctaactcccaagctaatatgcatgcagtattagtctgt
ctttaaggccataaaatcttctccaaaaagttgagaaaacagaagctcag
agggacttttccaacattccatgggtggctgtgagcaacagacctaccac
atgcggtgggaaaacttccccgggtcattagctttcctgcaaccatcaaa
gttactgtgtaacgtgtacactcagagcagctcaactcatccttagtgat
cagcgtgagccagtaagttccttcccttatcagactcacctcttgtcccc
gatctaccacttggccaacacaaatctgttgatgtatcacatctttgtgg
gaagtttaactggtggctgtggggtgataagtctgaaaggtaggcaggag
ccagcatgggtggcatcaaatggtagtctaaggactaggctcagttctcc
tggtctgcccttgctgccccaggcttctgaaggccaatctctaaggagtg
agcctccagggcttcaggcttctgtgtgagtcactagaggagttctgaga
gcagggaggccgaggcacttgtcctctgatctctcttttcttttcctttc
tttctttctttctttctttctctctctccctctctctcctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108384869_108385870
seq2: B6Ng01-280L14.b_50_1059 (reverse)

seq1  TTTTTC-TTTTGT-CCGGACGATC-AGGATAGCTCTCAGGGCCCGGCCCT  47
      |||||| |||||| ||| |||||| || ||||||||||||||||||||||
seq2  TTTTTCTTTTTGTCCCGAACGATCAAGAATAGCTCTCAGGGCCCGGCCCT  50

seq1  GTGT-GGCCTTGCCTGGCTTGCTCG-AATCCTGC-AACCTCTGCAGGC-A  93
      |||| |||||||||||||| ||||| |||||||| ||||||||||||| |
seq2  GTGTGGGCCTTGCCTGGCTGGCTCGAAATCCTGCAAACCTCTGCAGGCAA  100

seq1  GGTTGGCGGGCCGATCCCAGACCCACGTCCCACC-ACCCGCCGGCGAAGA  142
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTTGGCGGGCCGATCCCAGACCCACGTCCCACCAACCCGCCGGCGAAGA  150

seq1  TCCGGGGATGGGCAACGCCACCCAGCTCGCTCCAGAGCCAGCATGGGTAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGATGGGCAACGCCACCCAGCTCGCTCCAGAGCCAGCATGGGTAA  200

seq1  GGGTGGCCCTCCTGCCGCTGCTGGGGCTTGGGACCATTGCCCGGTTCCAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCCTCCTGCCGCTGCTGGGGCTTGGGACCATTGCCCGGTTCCAA  250

seq1  ACCATAGCCCGGCTAGGATGTAGGTGAACGCTTCTCTGCTTGATTGCCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCCCGGCTAGGATGTAGGTGAACGCTTCTCTGCTTGATTGCCTG  300

seq1  CTGGGAGTGCACGAAACTTAACCTCTACCTCGGTAGAACCGGTGCTGCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTGCACGAAACTTAACCTCTACCTCGGTAGAACCGGTGCTGCAG  350

seq1  TGTCCAGCATGGAGGACAAGGGCAGGGATTCTGGGGTGGGAGGGGATGCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCATGGAGGACAAGGGCAGGGATTCTGGGGTGGGAGGGGATGCC  400

seq1  TCGTGGGACTTTACCTCTAGCTAGTCCTGGAAAATAAGGACCTAGTATCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGACTTTACCTCTAGCTAGTCCTGGAAAATAAGGACCTAGTATCT  450

seq1  TTGGAGAGGCAGCTCCAATCTTATCCATGACTAGACTCCAGCTCTGGGGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGCAGCTCCAATCTTATCCATGACTAGACTCCAGCTCTGGGGT  500

seq1  GGGTTGTGTGAGCCTCCAGTGTTTTTGTTAGATTTCTCAGTCAGGGCCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGTGAGCCTCCAGTGTTTTTGTTAGATTTCTCAGTCAGGGCCCA  550

seq1  ATTCTAAAGTACGTTAGAACCTCCTAGAGTTAGCAGGAAGATGACTCCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGTACGTTAGAACCTCCTAGAGTTAGCAGGAAGATGACTCCTT  600

seq1  ACTGAAGTGATGAGGTCGGATTTAATTCATGAAGAAATGGACTCCATGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTGATGAGGTCGGATTTAATTCATGAAGAAATGGACTCCATGCT  650

seq1  TGAGGTTTTTGAGCCCAGAGAAGGTGGAAGGGGCCTTGTGCCTATGGCAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTTGAGCCCAGAGAAGGTGGAAGGGGCCTTGTGCCTATGGCAC  700

seq1  TGGCTTAGACTGTTTTTGCCTTTTGAAGTTGTTTTGTAGATCTAGAACTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGACTGTTTTTGCCTTTTGAAGTTGTTTTGTAGATCTAGAACTA  750

seq1  GAAGTCACGATGTCTGCTTTCTCTTCACGTGTGCTAGGGCTGCCTGTGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACGATGTCTGCTTTCTCTTCACGTGTGCTAGGGCTGCCTGTGAA  800

seq1  CAGTCAAGAAGCTGGATGGGTCTAGAGAAAGTACCTTAGCAATGGCACCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGAAGCTGGATGGGTCTAGAGAAAGTACCTTAGCAATGGCACCT  850

seq1  CAGGTCATCCATCACCTTGAATTCCTGGAGATGTAGTGTATTTGACTAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATCCATCACCTTGAATTCCTGGAGATGTAGTGTATTTGACTAGT  900

seq1  TACTAGTAGGCAGGCTTTGAGAATGCACTTCTGTTTTGAGTGATGATTAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTAGGCAGGCTTTGAGAATGCACTTCTGTTTTGAGTGATGATTAG  950

seq1  GAACTAGTGGAGAAAAGCTCCCAGGACTTGGCAGAAAGCATCTCTTGTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGTGGAGAAAAGCTCCCAGGACTTGGCAGAAAGCATCTCTTGTCA  1000

seq1  GGTTGAATTC  1002
      ||||||||||
seq2  GGTTGAATTC  1010

seq1: chr8_108255666_108256610
seq2: B6Ng01-280L14.g_69_1013

seq1  GAATTCAAATCCTCAACACCTATATAAAAAGCCAGCTATGGCTTTGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCTCAACACCTATATAAAAAGCCAGCTATGGCTTTGTATG  50

seq1  CCTGAAAGCCCAGCATTTGGGATGCAGAGACAGGTGGTTCCCAAGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGCCCAGCATTTGGGATGCAGAGACAGGTGGTTCCCAAGAGCTT  100

seq1  GCTGGCCAGACAGCCTAGTCAAAATGGTAGCTTCTGGTTGGGTGCAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGACAGCCTAGTCAAAATGGTAGCTTCTGGTTGGGTGCAGATC  150

seq1  CCAAGGGAATAAGATAAAGAGTAATTATGTGGCCACCTGGTGTATTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAATAAGATAAAGAGTAATTATGTGGCCACCTGGTGTATTTCTC  200

seq1  TGGCCTCCATGCCCACATACACAGATGTGGGCACCTACACTCTTACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCATGCCCACATACACAGATGTGGGCACCTACACTCTTACATGT  250

seq1  ATGGGCCATACCCTCCTACACACAAATCAAACAAATGAACAGCTGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATACCCTCCTACACACAAATCAAACAAATGAACAGCTGTGTGG  300

seq1  GAGCGCAAAGGTCTAACTCCCAAGCTAATATGCATGCAGTATTAGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAAAGGTCTAACTCCCAAGCTAATATGCATGCAGTATTAGTCTGT  350

seq1  CTTTAAGGCCATAAAATCTTCTCCAAAAAGTTGAGAAAACAGAAGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGCCATAAAATCTTCTCCAAAAAGTTGAGAAAACAGAAGCTCAG  400

seq1  AGGGACTTTTCCAACATTCCATGGGTGGCTGTGAGCAACAGACCTACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTTTCCAACATTCCATGGGTGGCTGTGAGCAACAGACCTACCAC  450

seq1  ATGCGGTGGGAAAACTTCCCCGGGTCATTAGCTTTCCTGCAACCATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGTGGGAAAACTTCCCCGGGTCATTAGCTTTCCTGCAACCATCAAA  500

seq1  GTTACTGTGTAACGTGTACACTCAGAGCAGCTCAACTCATCCTTAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGTGTAACGTGTACACTCAGAGCAGCTCAACTCATCCTTAGTGAT  550

seq1  CAGCGTGAGCCAGTAAGTTCCTTCCCTTATCAGACTCACCTCTTGTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGAGCCAGTAAGTTCCTTCCCTTATCAGACTCACCTCTTGTCCCC  600

seq1  GATCTACCACTTGGCCAACACAAATCTGTTGATGTATCACATCTTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACCACTTGGCCAACACAAATCTGTTGATGTATCACATCTTTGTGG  650

seq1  GAAGTTTAACTGGTGGCTGTGGGGTGATAAGTCTGAAAGGTAGGCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAACTGGTGGCTGTGGGGTGATAAGTCTGAAAGGTAGGCAGGAG  700

seq1  CCAGCATGGGTGGCATCAAATGGTAGTCTAAGGACTAGGCTCAGTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGGGTGGCATCAAATGGTAGTCTAAGGACTAGGCTCAGTTCTCC  750

seq1  TGGTCTGCCCTTGCTGCCCCAGGCTTCTGAAGGCCAATCTCTAAGGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCCCTTGCTGCCCCAGGCTTCTGAAGGCCAATCTCTAAGGAGTG  800

seq1  AGCCTCCAGGGCTTCAGGCTTCTGTGTGAGTCACTAGAGGAG-TCTGAGA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCCTCCAGGGCTTCAGGCTTCTGTGTGAGTCACTAGAGGAGTTCTGAGA  850

seq1  GCAGGGAGGCCGAGGCACTTGTCCTCTGATCTCTCTTTTCTTTTCTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCAGGGAGGCCGAGGCACTTGTCCTCTGATCTCTCTTTTCTTTTCCTTTC  900

seq1  TTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC  945
      |||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TTTCTTTCTTTCTTTCTTTCTCTCTCTCCCTCTCTCTC-CTCTCTC  945