BAC Information

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BAC

Clone NameB6Ng01-280M20
Chromosome8 (Build37)
Map Location 4,111,285 - 4,112,316
singlet/doubletsinglet
Overlap genenone
Upstream geneEG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f
Downstream geneCd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M20.bB6Ng01-280M20.g
ACCGA080439GA080440
length9411,153
definitionB6Ng01-280M20.b B6Ng01-280M20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttaactctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatattttggatactagtcccc
caaaaggctttcaagagaggtttggaaagactgtagcagtttcctgcttg
ctctttgagatgagttcttagctgctgtgtgctgcttgctgcctgctgcc
tgctgcctgctgcctgctgcctgctgcctgctgcctgctgcctgctgcct
gctgcctgctgcctgctgcctcccctaggctatcatggactctgacactc
tgaaactgtaagctccaaataaactttcttgccttggacatggtgtttaa
tcacagcaatagaaaactaatacatatattaaatgtagtttaggatttgt
ttgtaacataacatacagatatacatgctcatgctcttatacatggtgaa
aattaataaccagtattaacactccattgtattccatggagctctccagc
ttttgtcaccttaactcctttatggcaacgaactggtttcattatctttt
tatttttatttatttttttattcttattcttaccagtacttggtgaagcc
taggacttcctatatacagtcatcacataaccactaactacattctcttt
aattgtctacattgagacagtctgagctgctctaactggctgactcatcc
tatagctcagcagcttgaacttatgactctcctagtactagatgcagctg
tatacagctgtcatatcattatacattattgtgtacacagttcatttgtg
gatcacacatgttacacatgtatgtgagcacgacactgctgtcatctcat
acagtctactgagttcgtggagatgaatagatgcagtatcagactgatct
agagcaatgatacagtatcagtacatgagtacagctacagc
gaattctcaccagaggaatactgactggctgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaagtcaggtgacagc
agatgctggagaggatgtgcagaatgaggactatcccgtcccacgggatt
cagttattaatggatgcgagggagatcgcaaacctggaaggagatgggag
gaagaaaaagaagagaggaaaccaggaagaatttcctatcaaggtctcgt
ttattaggctgaggtgccttctttttaaagcatacattgtggggaatatg
ggaggggtcgagggagaaatatacaaagaacaaaaaaatgggcaactgat
gacatgtgggccaaagtcaggcgccaggcagcgggcactctgcatcttat
ctctggaacatcgatcctccttgacagccttgggtgtcaggctgtgctca
ggcgtaactcatgtccttggatggcatcggaactcaggaagagataggga
agaggggactataattcagcttttacagcctcaggtgccaagaaaggaat
agggagaaaggggagtgataaccagctcttagtacaaggccatttggcct
gttagggagattgtgaagggctcactttctcacgggatggtctctcacag
aggaccactcctccatttttggtgtgattgcaagcttgtacaaccactct
ggaaatcagtctcgtgcttcctcagaaaattggacataatactactggag
aatcctgcaacacctctcctggcatatatccagaagatgttccaactagt
aagaagaaacatgctccactatgttcatagcagccttatttataatagcc
agaagctggaaagaccccaaatgccctttcacagaggaatggataaaaaa
aaaaaatgtggtacatttgcacaatggagtactacttcagctataaaagg
aataatttattgaaatcctaagcaaattgttggtctggaggagtgagtat
catcctgatgaggtgaccaatcacaaagagctcatgatatggtactccac
tggcaagtggactattagcattagcttgaattccagaataagaatataag
tgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4111285_4112316
seq2: B6Ng01-280M20.b_45_985 (reverse)

seq1  GCTGTAGCTGTAACTCCATGGTAATTTAAATACCTAATATACATAAGGCT  50
      ||||||||||| ||| ||| ||| |    ||||   ||   |||   |||
seq2  GCTGTAGCTGT-ACT-CAT-GTACT---GATACTGTAT---CAT--TGCT  39

seq1  CTAGATCAGTCCCGGGTACTGACAAAACAAAATATCATCCTCCCCAACAA  100
      ||||||||||  | | |||||          || |  || || ||    |
seq2  CTAGATCAGT--CTGATACTG---------CATCTATTCATCTCC----A  74

seq1  AAAACTCAAGGTAGACCCTGTATGAGGAATGACAGCCAAGGTTGTCCCCT  150
        ||||||  |||||  |||||||||  ||||||||  ||  ||||    
seq2  CGAACTCA--GTAGA--CTGTATGAG--ATGACAGC--AG--TGTC----  110

seq1  GGCCTCCACATACATGTGTAAACATGTGTGATTCCCCACAAATGAACCTG  200
      |  || ||||||||||||| ||||||||||||   ||||||||||| |||
seq2  GTGCT-CACATACATGTGT-AACATGTGTGAT---CCACAAATGAA-CTG  154

seq1  TGTACACAAAATTAAATGTATTAAAATGATTATTGGACAAGCCTGGTATT  250
      |||||||||     |||||||   ||||| |||  ||| |||   ||| |
seq2  TGTACACAA----TAATGTAT---AATGA-TAT--GAC-AGC--TGTA-T  190

seq1  ACAGGCTGCAATCCTAGTACTAGGAGAGTCATAAGTTCAAGGGCTGCCTG  300
      ||| ||||||   |||||||||||||||||||||||||||  |||| |||
seq2  ACA-GCTGCA--TCTAGTACTAGGAGAGTCATAAGTTCAA--GCTG-CTG  234

seq1  AGCTATAGGATGAGTTCAGCCCCAGTTAGAGCAGCTTCAGACCCTGTCTC  350
      |||||||||||||| ||||  |||||||||||||| |||||  |||||||
seq2  AGCTATAGGATGAG-TCAG--CCAGTTAGAGCAGC-TCAGA--CTGTCTC  278

seq1  AAAATGTAAGACAATTAAAAAGAGGAATGTAGTTTAGTGGTTATGTGATT  400
        ||||| ||||||||||| |   |||||||| ||||||||||||||| |
seq2  --AATGT-AGACAATTAAAGA---GAATGTAG-TTAGTGGTTATGTGA-T  320

seq1  GACTGGTATATAGGAAGTCCTAGGCTTCACCCCAAGTACTGGTTAAGAAA  450
      |||| ||||||||||||||||||||||||  ||||||||||| |||| ||
seq2  GACT-GTATATAGGAAGTCCTAGGCTTCA--CCAAGTACTGG-TAAG-AA  365

seq1  TAAGAAATAAAAAAATAAAAATAAAAATAAAAAGATAATGAAAACCAGTT  500
      |||| |||||||||||  |||||||||||||||||||||| |||||||||
seq2  TAAG-AATAAAAAAAT--AAATAAAAATAAAAAGATAATG-AAACCAGTT  411

seq1  CGTTTGCCATAAAAGGAGTTAAGGTGACAAAAGCTGGAGAGCTCCATGGA  550
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CG-TTGCCAT-AAAGGAGTTAAGGTGACAAAAGCTGGAGAGCTCCATGGA  459

seq1  ATACAATGGAGTGTTAATACTGGTTATTAATTTTCACCATGTATAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGGAGTGTTAATACTGGTTATTAATTTTCACCATGTATAAGAGC  509

seq1  ATGAGCATGTATATCTGTATGTTATGTTACAAACAAATCCTAAACTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATGTATATCTGTATGTTATGTTACAAACAAATCCTAAACTACAT  559

seq1  TTAATATATGTATTAGTTTTCTATTGCTGTGATTAAACACCATGTCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATGTATTAGTTTTCTATTGCTGTGATTAAACACCATGTCCAAG  609

seq1  GCAAGAAAGTTTATTTGGAGCTTACAGTTTCAGAGTGTCAGAGTCCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAGTTTATTTGGAGCTTACAGTTTCAGAGTGTCAGAGTCCATGA  659

seq1  TAGCCTAGGGGAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGGGGAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGC  709

seq1  AGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAAGCA  759

seq1  GCACACAGCAGCTAAGAACTCATCTCAAAGAGCAAGCAGGAAACTGCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCAGCTAAGAACTCATCTCAAAGAGCAAGCAGGAAACTGCTAC  809

seq1  AGTCTTTCCAAACCTCTCTTGAAAGCCTTTTGGGGGACTAGTATCCAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCCAAACCTCTCTTGAAAGCCTTTTGGGGGACTAGTATCCAAAA  859

seq1  TATACAAAGAGCTCAAGAAGCTGAACTCCAGAAATTCAAATAACCCCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGAGCTCAAGAAGCTGAACTCCAGAAATTCAAATAACCCCATT  909

seq1  AAAAATGGGGTACAGAGTTAAACAAAGAATTC  1032
      ||||||||||||||||||||||||||||||||
seq2  AAAAATGGGGTACAGAGTTAAACAAAGAATTC  941