BAC Information

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BAC

Clone NameB6Ng01-280N16
Chromosome8 (Build37)
Map Location 106,871,518 - 106,872,660
singlet/doubletsinglet
Overlap geneCmtm3
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b
Downstream geneCmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N16.bB6Ng01-280N16.g
ACCGA080479GA080480
length1,1291,210
definitionB6Ng01-280N16.b B6Ng01-280N16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctccctttaaaaaaaaaagtcacaatggattaaaacaaactga
ctacatgcttggagtgcgcctgactaagaactcaccactgcctgcagaca
cactgtgtgcccgtttccatacaagcaagcacaggagtgctgacagctct
gaactcagttgtgagaaagcacttactgtgctgggtatcagggtggcggg
tgacactgctggtgcctttactcaaccccacggtcgaggcactaaagggt
aagcatacattctcattaagatggcgttctgcaacagccacaacgtgggg
ctccagggtttagaaactagttgagcaagggacctcagagcagtggctac
gaggacattctggtcattgtcactgaacacgcactgaaaacaggcgggca
gtcggatgcgcagaggcagaggggctgtgcagtgccacacagcctagcag
gctggtccttccttctccagccgcttacagcctgctgactgtgctccagc
tcgacccacagggcaagcctgctgcaaaagtgggacccaaagcctctggg
agagaaagaaaagactaaagcgcttttgtttgtttgtttttttaatatgt
ccatttattaaacaagaactccttcttgacaatacagtattcattagtga
ttagtattgagaaaagtatttccctctacatacaaaaatacagatttgaa
caatatgaaaacaatcaagacaagtaccatgaaaaattggtccttcaaag
gaaagtggagaggctgagggcagggtgaggctttgcctgctgtctagcaa
atcaacggggcaaatgccatccatggctcccacatcatttgcagtgcaca
gggtccagcctgggggtcagggaggtccatccatggcgacaatgtcagat
gggcccagatgggaaactcagtactgcaaacacacaattcaaggttctta
aacggccctcaccttggaattcccatgccaaacaactttagctagacatg
gtggtccacttctgtgtgctatcccagcatttagagaagaaaatggggat
tgctataggtagagtcagacagactactagcaagaccctgcttcaaagaa
aacaaactcaagaaacaatgtgtaactat
gaattcctgatctttccaagacttttatcatgaatgggtgttggataatt
ccaactcaattcttcaacgaattagaaagggcagattcatctggaataac
aaaaaaccgaggatagaaaaaactcttctcaaggataaaagaacctctgg
tggaatcaccatgccggacctaaaactgtactacagagcaattgtgatca
aaactgcatggtactggtatagtgacagacaagtagaccaatggaacaga
attgaagacccagagatgaatccacacacctatggtcacttgatctttga
caagggagctaaaaccatccagtggaaaaaagacagcattttcaacaaat
ggtgctggcacaactggcggttatcatgtagaagaatgcgaattgatcca
tttctatctccttgtactaaggtcaaatctaagtagattaaggaactcca
cataaaaccagagacactgaaacttatagaggagaaagtagggaaaagcc
ttgaagatatgggtacaggggaaaaattcctgaatagaacagcaatggct
tgtgctgtaaaatcaagaatcgataaatgggacctcataaaattgcaaag
cttctgcaaagcaaaagacaccgtcaataagacaaaaaggccaccaacag
attgggaaaggatctttacctatcccaaatcggataggggactaatatcc
aatatatataaagaactcaagaaggtggactccagaaaatcaaacaactc
cattaaaaaatggggctcagagctgaacaaagaattctcacctgaggaat
accgaatggcagagaagcacctggaaaaaatgttcaacatccttaatcat
cagggaaatgcaaatcaaaacaacactgagattccacttcactccagtca
gaatggctaagatcaaaaactcagtgacagcagatgctggcgaggatgtg
agaaagggacactcctccattgtggtgggattgcaagcttgtacaaccac
tctggaaatcagttctggagttcctcagaaattggacatagtactacgga
ggatcatgcataccttctcctgggcattatatccagagatgtccatcggt
aagaggaaaccatgctccactattgttcatagcagccttgtttaatagct
aaagcctggaaagaaccgaagttccctctccacacagaggaaagtggata
ctcgagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106871518_106872660
seq2: B6Ng01-280N16.b_45_1173

seq1  GAATTCCCTCCCTTTAAAAAAAAAAGTCACAATGGATTAAAACAAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCCTTTAAAAAAAAAAGTCACAATGGATTAAAACAAACTGA  50

seq1  CTACATGCTTGGAGTGCGCCTGACTAAGAACTCACCACTGCCTGCAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCTTGGAGTGCGCCTGACTAAGAACTCACCACTGCCTGCAGACA  100

seq1  CACTGTGTGCCCGTTTCCATACAAGCAAGCACAGGAGTGCTGACAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTGCCCGTTTCCATACAAGCAAGCACAGGAGTGCTGACAGCTCT  150

seq1  GAACTCAGTTGTGAGAAAGCACTTACTGTGCTGGGTATCAGGGTGGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGTTGTGAGAAAGCACTTACTGTGCTGGGTATCAGGGTGGCGGG  200

seq1  TGACACTGCTGGTGCCTTTACTCAACCCCACGGTCGAGGCACTAAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGCTGGTGCCTTTACTCAACCCCACGGTCGAGGCACTAAAGGGT  250

seq1  AAGCATACATTCTCATTAAGATGGCGTTCTGCAACAGCCACAACGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACATTCTCATTAAGATGGCGTTCTGCAACAGCCACAACGTGGGG  300

seq1  CTCCAGGGTTTAGAAACTAGTTGAGCAAGGGACCTCAGAGCAGTGGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGTTTAGAAACTAGTTGAGCAAGGGACCTCAGAGCAGTGGCTAC  350

seq1  GAGGACATTCTGGTCATTGTCACTGAACACGCACTGAAAACAGGCGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTCTGGTCATTGTCACTGAACACGCACTGAAAACAGGCGGGCA  400

seq1  GTCGGATGCGCAGAGGCAGAGGGGCTGTGCAGTGCCACACAGCCTAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGATGCGCAGAGGCAGAGGGGCTGTGCAGTGCCACACAGCCTAGCAG  450

seq1  GCTGGTCCTTCCTTCTCCAGCCGCTTACAGCCTGCTGACTGTGCTCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCTTCCTTCTCCAGCCGCTTACAGCCTGCTGACTGTGCTCCAGC  500

seq1  TCGACCCACAGGGCAAGCCTGCTGCAAAAGTGGGACCCAAAGCCTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCCACAGGGCAAGCCTGCTGCAAAAGTGGGACCCAAAGCCTCTGGG  550

seq1  AGAGAAAGAAAAGACTAAAGCGCTTTTGTTTGTTTGTTTTTTTAATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAAGACTAAAGCGCTTTTGTTTGTTTGTTTTTTTAATATGT  600

seq1  CCATTTATTAAACAAGAACTCCTTCTTGACAATACAGTATTCATTAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATTAAACAAGAACTCCTTCTTGACAATACAGTATTCATTAGTGA  650

seq1  TTAGTATTGAGAAAAGTATTTCCCTCTACATACAAAAATACAGATTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTGAGAAAAGTATTTCCCTCTACATACAAAAATACAGATTTGAA  700

seq1  CAATATGAAAACAATCAAGACAAGTACCATGAAAAATTGGTCCTTCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAAAACAATCAAGACAAGTACCATGAAAAATTGGTCCTTCAAAG  750

seq1  GAAAGTGGAGAGGCTGAGGGCAGGGTGAGGCTTTGCCTGCTGTCTAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGAGAGGCTGAGGGCAGGGTGAGGCTTTGCCTGCTGTCTAGCAA  800

seq1  ATCAACGGGGCAAATGCCATCCATGGCTCCCACATCATTTGCAGTGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGGGGCAAATGCCATCCATGGCTCCCACATCATTTGCAGTGCACA  850

seq1  GGGTCCAGCCTGGGGGTCAGGGGAGGTCCATCCATGGCGACAATGTCAGA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGTCCAGCCTGGGGGTCA-GGGAGGTCCATCCATGGCGACAATGTCAGA  899

seq1  TGGGCCCAGATGGGAAACTCAGTACTGCAAACAACACAAATTCAAGGTTC  950
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TGGGCCCAGATGGGAAACTCAGTACTGCAAAC-ACAC-AATTCAAGGTTC  947

seq1  TTAAACGGCCCTCACCTTGGAATTCCCATGCCAAACAACTTTAGCTAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGGCCCTCACCTTGGAATTCCCATGCCAAACAACTTTAGCTAGAC  997

seq1  ATGGTGGTCCACTTCTGTGTGCTATCCCAGCATTTAGGAGGAAGAAACAG  1050
      |||||||||||||||||||||||||||||||||||||   ||||||| | 
seq2  ATGGTGGTCCACTTCTGTGTGCTATCCCAGCATTTAG--AGAAGAAA-AT  1044

seq1  GGGGATTGCTATAAGTTAGAGGTCAGACAGGACTACCTAGCAAGACCCTG  1100
      |||||||||||| || |||| |||||||| ||||| ||||||||||||||
seq2  GGGGATTGCTAT-AGGTAGA-GTCAGACA-GACTA-CTAGCAAGACCCTG  1090

seq1  CCTCAAAGAAAACCAAACTCAAGAAACAAAATGTGGTAACTAT  1143
      | |||||||||| ||||||||||||||  ||||| ||||||||
seq2  CTTCAAAGAAAA-CAAACTCAAGAAAC--AATGT-GTAACTAT  1129