BAC Information

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BAC

Clone NameB6Ng01-281I18
Chromosome8 (Build37)
Map Location 112,745,373 - 112,862,318
singlet/doubletdoublet
Overlap geneBC025546, Hydin
Upstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2
Downstream geneLOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281I18.bB6Ng01-281I18.g
ACCGA080996GA080997
length1,1821,070
definitionB6Ng01-281I18.b B6Ng01-281I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,861,142 - 112,862,318)(112,745,373 - 112,746,438)
sequence
gaattcattttctgtcactggtagaattaaagaagaaatcaaaaacaaat
aaacaaacaaaaaaatacaaagcaactagctataaaactcccaagagttt
gatgattattcattgttttgctaaataccttttgggcctaagaaaaacta
aaaccagcagattttaaatccttaactttccaggaaaatgaggcctacta
aaatatatgcattgaagataaagccagctttagataaaagaattttgtct
aaagtgtacatattatagagtgctgatgaaaagagttgtctatgagcccg
aggcctgggcctgaaaacaaagcagaaaagaatgcaaggacaagcagggt
tatcttgtctgagtcaacaccacctggccggaacctcccctctgtctact
gccccttgatgatgggtaaagtcatacatcaactggttgctatgtgaaca
aagataagcccccagcccacaggaacaaagtcctgatgcccttttgctga
catgtaatctttctgttaatgtttgaataagccaatagtgtgtcgctgtg
ctgaattccacacccctaagccccttaccccataaaaacccctagcttcc
gagcctcggggtagactcccctgcctcctgtgtgaggtacatgtcggccc
agagctctgccaataaagcctcgtgcattttgcatcaagaaggattcttg
cgtgttcgtgggtgtatcctgtccctggactagagtgggggtccccatat
cgggggtcctacactgaaagagtacatgttaaaagtcagtgttttaagca
ctccccctaaggctgagaaccaccacaagaagcctggggaaataataaag
aagaaaataaataaagtttgaaaaaatgtgaagtgtaaagaaaaatcaaa
gggaaagttggccctctgagtacgtgaacaaaactaatacagccacagcg
atagaccacacggctaaggaggaaggaggacagcccagcaggcttagcag
catcacaaagacagggagtggctgctctggacattcctgagcttggactt
aagatctcaagtatgggcagattatcccttagttggcttaggaaatgggg
agcccagtgatttaggaatctgcacctcttttgcaaaggaaaaggccatg
gtttgaccgagacctccttagccattttaagg
gaattctctgcacctgtgtgaagctccgggcgccttcatcgctagcctca
accattacttaaaatctcaccggttcccctgtgaatggagctgggtggcg
aacagcctgaatccataccacgaggcaaacgacaatcttaggatgattac
ggatgaccggctgatggcaaataccttgcactgctggtacttcggcccag
ataataccggtgatatcatgaccctgaaatatctgaccgggcttcaggac
ttcctcagcggcatgtctcccattcacttggtcacggctgatggcagctt
cgattgccaaggaaacccaggtgaacaggaagccttagtgtcgtctttgc
attactgcgaagctgtcactgctctgatcactcttggagacggcggctct
tttgttctaaagatgtttacgttgtttgaacactgttctgtgaacctcat
gtacctgctaaattgttcttttgaccaagttcatgttttcaaacctgcga
ctagcaaggcaggaaactcagaagtctatgtggtgtgtcttcgctataag
ggaagagaggccgttcagcctctgctatctaggatggtgttgaacttcgg
cactgagatgaccaggaaggcgctctttcctcatcatgtgatccccaaat
ccttccttgagcgacacgaagagtgttgtacgttctttcatagataccag
ttagagactatatctgagaacattcgtctttttgagagcatgggaacggg
gggagcaagagagactcaataatctaagggattgcgctgtacaatatttt
atgcaaaaatttcaactgaagcctctttcaagaaatcactggctcgttaa
aagtccaatattggttgtagtatgaacacgaaatggtttggacagagaaa
caagtattttaaacctataatgaacgggaagatgatggaaaccctttcat
ggaaggataaagtagccaaaggatacttcaatagttgggcagagaaccac
acgttcttatcatcccgggcagaattccctcttgagggaactgcctttca
gtctttggagtaaccagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112861142_112862318
seq2: B6Ng01-281I18.b_47_1228 (reverse)

seq1  CCTT-AAATGGCTAAGAAGTTCTCTGTCCAAACCATG--CTTTTCTTTTG  47
      |||| ||||||||||| || |||| || |||||||||  |||||| ||||
seq2  CCTTAAAATGGCTAAGGAGGTCTCGGT-CAAACCATGGCCTTTTCCTTTG  49

seq1  CAAAAGAGGTGCAGATT-CTTAATCACT-GGCT-CCCATTTCCTAAGCCA  94
      ||||||||||||||||| || ||||||| |||| ||||||||||||||||
seq2  CAAAAGAGGTGCAGATTCCTAAATCACTGGGCTCCCCATTTCCTAAGCCA  99

seq1  ACTTTAAGGATATTTTG-CCATACTTTGAGATCTTAAGTTCCAAGCTCAG  143
      || | | ||||| | || |||||| ||||||||||||| |||||||||||
seq2  AC-TAAGGGATAATCTGCCCATAC-TTGAGATCTTAAG-TCCAAGCTCAG  146

seq1  GATTGTTCAGAGCAGCCACT-CCTGTCTTTGTGATGCTGCTAAGCCTGCT  192
      || ||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATGTCCAGAGCAGCCACTCCCTGTCTTTGTGATGCTGCTAAGCCTGCT  196

seq1  -GGCTGTCCTCCTTCCTCCTTAGCCGTGTGGTCTATCGCTGTGGCTGTAT  241
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCCTCCTTCCTCCTTAGCCGTGTGGTCTATCGCTGTGGCTGTAT  246

seq1  TAGTTTTGTTCACGTACTCAGAGGGCCAACTTT-CCTTTGATTTTTCTTT  290
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGTTTTGTTCACGTACTCAGAGGGCCAACTTTCCCTTTGATTTTTCTTT  296

seq1  ACACTTCACATTTTTTCAAACCTTATTTATTTTTCTTCTTTATTATTTCC  340
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  ACACTTCACATTTTTTCAAACTTTATTTA-TTTTCTTCTTTATTATTTCC  345

seq1  CCAGGCTTCTTGTGGTGGTTCTCAGCCTTAGGGGGAGTGCTTAAAACACT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTCTTGTGGTGGTTCTCAGCCTTAGGGGGAGTGCTTAAAACACT  395

seq1  GACTTTTAACATGTACTCTTTCAGTGTAGGACCCCCGATATGGGGACCCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAACATGTACTCTTTCAGTGTAGGACCCCCGATATGGGGACCCC  445

seq1  CACTCTAGTCCAGGGACAGGATACACCCACGAACACGCAAGAATCCTTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGTCCAGGGACAGGATACACCCACGAACACGCAAGAATCCTTCT  495

seq1  TGATGCAAAATGCACGAGGCTTTATTGGCAGAGCTCTGGGCCGACATGTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAAAATGCACGAGGCTTTATTGGCAGAGCTCTGGGCCGACATGTA  545

seq1  CCTCACACAGGAGGCAGGGGAGTCTACCCCGAGGCTCGGAAGCTAGGGGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACAGGAGGCAGGGGAGTCTACCCCGAGGCTCGGAAGCTAGGGGT  595

seq1  TTTTATGGGGTAAGGGGCTTAGGGGTGTGGAATTCAGCACAGCGACACAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGGGTAAGGGGCTTAGGGGTGTGGAATTCAGCACAGCGACACAC  645

seq1  TATTGGCTTATTCAAACATTAACAGAAAGATTACATGTCAGCAAAAGGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTTATTCAAACATTAACAGAAAGATTACATGTCAGCAAAAGGGC  695

seq1  ATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTTCACATAGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTTCACATAGCA  745

seq1  ACCAGTTGATGTATGACTTTACCCATCATCAAGGGGCAGTAGACAGAGGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGATGTATGACTTTACCCATCATCAAGGGGCAGTAGACAGAGGG  795

seq1  GAGGTTCCGGCCAGGTGGTGTTGACTCAGACAAGATAACCCTGCTTGTCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCCGGCCAGGTGGTGTTGACTCAGACAAGATAACCCTGCTTGTCC  845

seq1  TTGCATTCTTTTCTGCTTTGTTTTCAGGCCCAGGCCTCGGGCTCATAGAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCTTTTCTGCTTTGTTTTCAGGCCCAGGCCTCGGGCTCATAGAC  895

seq1  AACTCTTTTCATCAGCACTCTATAATATGTACACTTTAGACAAAATTCTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTTCATCAGCACTCTATAATATGTACACTTTAGACAAAATTCTT  945

seq1  TTATCTAAAGCTGGCTTTATCTTCAATGCATATATTTTAGTAGGCCTCAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAAGCTGGCTTTATCTTCAATGCATATATTTTAGTAGGCCTCAT  995

seq1  TTTCCTGGAAAGTTAAGGATTTAAAATCTGCTGGTTTTAGTTTTTCTTAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGAAAGTTAAGGATTTAAAATCTGCTGGTTTTAGTTTTTCTTAG  1045

seq1  GCCCAAAAGGTATTTAGCAAAACAATGAATAATCATCAAACTCTTGGGAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAAGGTATTTAGCAAAACAATGAATAATCATCAAACTCTTGGGAG  1095

seq1  TTTTATAGCTAGTTGCTTTGTATTTTTTTGTTTGTTTATTTGTTTTTGAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGCTAGTTGCTTTGTATTTTTTTGTTTGTTTATTTGTTTTTGAT  1145

seq1  TTCTTCTTTAATTCTACCAGTGACAGAAAATGAATTC  1177
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTAATTCTACCAGTGACAGAAAATGAATTC  1182

seq1: chr8_112745373_112746438
seq2: B6Ng01-281I18.g_65_1134

seq1  GAATTCTCTGCACCTGTGTGAAGCTCCGGGCGCCTTCATCGCTAGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACCTGTGTGAAGCTCCGGGCGCCTTCATCGCTAGCCTCA  50

seq1  ACCATTACTTAAAATCTCACCGGTTCCCCTGTGAATGGAGCTGGGTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACTTAAAATCTCACCGGTTCCCCTGTGAATGGAGCTGGGTGGCG  100

seq1  AACAGCCTGAATCCATACCACGAGGCAAACGACAATCTTAGGATGATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTGAATCCATACCACGAGGCAAACGACAATCTTAGGATGATTAC  150

seq1  GGATGACCGGCTGATGGCAAATACCTTGCACTGCTGGTACTTCGGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACCGGCTGATGGCAAATACCTTGCACTGCTGGTACTTCGGCCCAG  200

seq1  ATAATACCGGTGATATCATGACCCTGAAATATCTGACCGGGCTTCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACCGGTGATATCATGACCCTGAAATATCTGACCGGGCTTCAGGAC  250

seq1  TTCCTCAGCGGCATGTCTCCCATTCACTTGGTCACGGCTGATGGCAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGCGGCATGTCTCCCATTCACTTGGTCACGGCTGATGGCAGCTT  300

seq1  CGATTGCCAAGGAAACCCAGGTGAACAGGAAGCCTTAGTGTCGTCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGCCAAGGAAACCCAGGTGAACAGGAAGCCTTAGTGTCGTCTTTGC  350

seq1  ATTACTGCGAAGCTGTCACTGCTCTGATCACTCTTGGAGACGGCGGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCGAAGCTGTCACTGCTCTGATCACTCTTGGAGACGGCGGCTCT  400

seq1  TTTGTTCTAAAGATGTTTACGTTGTTTGAACACTGTTCTGTGAACCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAAAGATGTTTACGTTGTTTGAACACTGTTCTGTGAACCTCAT  450

seq1  GTACCTGCTAAATTGTTCTTTTGACCAAGTTCATGTTTTCAAACCTGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGCTAAATTGTTCTTTTGACCAAGTTCATGTTTTCAAACCTGCGA  500

seq1  CTAGCAAGGCAGGAAACTCAGAAGTCTATGTGGTGTGTCTTCGCTATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGGCAGGAAACTCAGAAGTCTATGTGGTGTGTCTTCGCTATAAG  550

seq1  GGAAGAGAGGCCGTTCAGCCTCTGCTATCTAGGATGGTGTTGAACTTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGGCCGTTCAGCCTCTGCTATCTAGGATGGTGTTGAACTTCGG  600

seq1  CACTGAGATGACCAGGAAGGCGCTCTTTCCTCATCATGTGATCCCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGATGACCAGGAAGGCGCTCTTTCCTCATCATGTGATCCCCAAAT  650

seq1  CCTTCCTTGAGCGACACGAAGAGTGTTGTACGTTCTTTCATAGATACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTGAGCGACACGAAGAGTGTTGTACGTTCTTTCATAGATACCAG  700

seq1  TTAGAGACTATATCTGAGAACATTCGTCTTTTTGAGAGCATGGGAAC-GG  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAGAGACTATATCTGAGAACATTCGTCTTTTTGAGAGCATGGGAACGGG  750

seq1  GGGAGCAAGAGAGACTCAATAATCTAAGGGATTGCGCTGTACAATATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAGAGAGACTCAATAATCTAAGGGATTGCGCTGTACAATATTTT  800

seq1  ATGCAAAAATTTCAACTGAAGCCTCTTTCAAGAAATCACTGGCTCGTTAA  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCAAAAATTTCAACTGAAGCCTCTTTCAAGAAATCACTGGCTCGTT-A  849

seq1  AAAGTCCAATATTGGTTGTAGTATGAACACGAAATGGTTTGGACAGAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAATATTGGTTGTAGTATGAACACGAAATGGTTTGGACAGAGAA  899

seq1  ACAAGTATTTTAAAACCTATAATGAAC-GGAAGATGATGGAAACCCTTTC  948
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  ACAAGTATTTT-AAACCTATAATGAACGGGAAGATGATGGAAACCCTTTC  948

seq1  ATGGAAGGATAAAGTAGCCAAAGGATACTTCAATAGTTGGGCAGAGGAAC  998
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  ATGGAAGGATAAAGTAGCCAAAGGATACTTCAATAGTTGGGCAGAGAACC  998

seq1  ACACCGTC-TATCATCCCGGGCAGAATTCCCTCCTTGAAGGGACTG-CTT  1046
      ||||  || ||||||||||||||||||||||| ||||| || |||| |||
seq2  ACACGTTCTTATCATCCCGGGCAGAATTCCCT-CTTGAGGGAACTGCCTT  1047

seq1  CCAGTCTT--GAGT-ACCAGTCG  1066
       |||||||  |||| ||||||||
seq2  TCAGTCTTTGGAGTAACCAGTCG  1070