BAC Information

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BAC

Clone NameB6Ng01-281K14
Chromosome8 (Build37)
Map Location 27,176,242 - 27,293,036
singlet/doubletdoublet
Overlap geneHook3, 1700047A11Rik, Rnf170, Thap1
Upstream genePlekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta
Downstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281K14.bB6Ng01-281K14.g
ACCGA081082GA081083
length1,174149
definitionB6Ng01-281K14.b B6Ng01-281K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,176,242 - 27,177,411)(27,292,888 - 27,293,036)
sequence
gaattctcaaaaccaaaatcaaaacaaagaaaaaaaccaaaaccaaccaa
ccaaccaaccaaccaaaatgaccagtaaatattttaaaaagtgtttaaca
tcattaggcatcaaaaatgcaaatcaaaattactctgagattcaatctat
tcattgatatcagactgcctattgttaagaaaataaatgacatcaaatgc
tggtggttggcaagagtatgaggggccttaagaggcaacgggtggaaatg
atctaaatacaaagtatttgtatataatgctataatgaaacccattagaa
cactcccatatttttttactttttgagactaggtctcattgtgatgctct
ggctagtctggatctcaccatgtagatcagactggttttgaactcagaga
tccaccagcctcggccctgagtgctgggattaaaggtgtgcaccaccaca
cccagcacattcactttccttcacgccaggtaaacacaaaacgttcctac
tctttagtaacttacagtttagtgatgaatgaaaatgtcagttaacactg
ctaaacattcaggttgttcttcaattttactgttagaaacttttccttaa
tcatttctagaagaaaaactacacaaaaaacattgaaccacgtggatttt
tatatagtaaaagaataaacatgggagtttattagagactgagcaatggg
gtaaggttcaggttagattatgaaaactctgaaaaaacctaatgtagagc
tcatggggaaaagagaaagaacttcagggatacaaagaggaagtgactac
attggggaaatgaagataaccagcattctctattacacacacacacacac
acacacacacacacacacacacacaccgtacaagtatgtgcattatatga
gggagcatgcttctctcccctcgaataatcagtcatcttaatgtagcctg
ggagaacgtgggctgtcttgaagcaggctgtaccaccaggtcggtctgga
gaacaggtcaggaggacaagccaagcccaacgtcttggcagcagttccac
agccagctgaatagttcaaaccgagctacactagaagtgacgtcatggga
aaggggactgacgtgtatggaaagaagataatgaaagttcctaaccaagt
aaggaggaaccagctagtcagaaa
agagacagagtcagagagagatcatattcggcaatataatcttttcacaa
tattaattctgtcaatgcaagaaaatggaaggtctttccatcatctgata
gcttctttaattttaagcatgtgggcccttgtgggggggagggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_27176242_27177411
seq2: B6Ng01-281K14.b_45_1218

seq1  GAATTCTCAAAACCAAAATCAAAACAAAGAAAAAAACCAAAACCAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAACCAAAATCAAAACAAAGAAAAAAACCAAAACCAACCAA  50

seq1  CCAACCAACCAACCAAAATGACCAGTAAATATTTTAAAAAGTGTTTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACCAACCAAAATGACCAGTAAATATTTTAAAAAGTGTTTAACA  100

seq1  TCATTAGGCATCAAAAATGCAAATCAAAATTACTCTGAGATTCAATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGCATCAAAAATGCAAATCAAAATTACTCTGAGATTCAATCTAT  150

seq1  TCATTGATATCAGACTGCCTATTGTTAAGAAAATAAATGACATCAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATATCAGACTGCCTATTGTTAAGAAAATAAATGACATCAAATGC  200

seq1  TGGTGGTTGGCAAGAGTATGAGGGGCCTTAAGAGGCAACGGGTGGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTGGCAAGAGTATGAGGGGCCTTAAGAGGCAACGGGTGGAAATG  250

seq1  ATCTAAATACAAAGTATTTGTATATAATGCTATAATGAAACCCATTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATACAAAGTATTTGTATATAATGCTATAATGAAACCCATTAGAA  300

seq1  CACTCCCATATTTTTTTACTTTTTGAGACTAGGTCTCATTGTGATGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCATATTTTTTTACTTTTTGAGACTAGGTCTCATTGTGATGCTCT  350

seq1  GGCTAGTCTGGATCTCACCATGTAGATCAGACTGGTTTTGAACTCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTCTGGATCTCACCATGTAGATCAGACTGGTTTTGAACTCAGAGA  400

seq1  TCCACCAGCCTCGGCCCTGAGTGCTGGGATTAAAGGTGTGCACCACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAGCCTCGGCCCTGAGTGCTGGGATTAAAGGTGTGCACCACCACA  450

seq1  CCCAGCACATTCACTTTCCTTCACGCCAGGTAAACACAAAACGTTCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACATTCACTTTCCTTCACGCCAGGTAAACACAAAACGTTCCTAC  500

seq1  TCTTTAGTAACTTACAGTTTAGTGATGAATGAAAATGTCAGTTAACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTAACTTACAGTTTAGTGATGAATGAAAATGTCAGTTAACACTG  550

seq1  CTAAACATTCAGGTTGTTCTTCAATTTTACTGTTAGAAACTTTTCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATTCAGGTTGTTCTTCAATTTTACTGTTAGAAACTTTTCCTTAA  600

seq1  TCATTTCTAGAAGAAAAACTACACAAAAAACATTGAACCACGTGGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAGAAGAAAAACTACACAAAAAACATTGAACCACGTGGATTTT  650

seq1  TATATAGTAAAAGAATAAACATGGGAGTTTATTAGAGACTGAGCAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTAAAAGAATAAACATGGGAGTTTATTAGAGACTGAGCAATGGG  700

seq1  GTAAGGTTCAGGTTAGATTATGAAAACTCTGAAAAAACCTAATGTAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTTCAGGTTAGATTATGAAAACTCTGAAAAAACCTAATGTAGAGC  750

seq1  TCATGGGGAAAAGAGAAAGAACTTCAGGGATACAAAGAGGAAGTGACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGAAAAGAGAAAGAACTTCAGGGATACAAAGAGGAAGTGACTAC  800

seq1  ATT-GGGAAATGAAGATAACCAGCATTCTCTATTACACACACACACACAC  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGAAATGAAGATAACCAGCATTCTCTATTACACACACACACACAC  850

seq1  ACACACACACACACACACACACACACCGTACAAGTATGTGCATTATATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACCGTACAAGTATGTGCATTATATGA  900

seq1  GGGAGCATGCTTCTCTCCCCTCGAAT-ATCAGTCATCTTAATGTAGCCTG  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGAGCATGCTTCTCTCCCCTCGAATAATCAGTCATCTTAATGTAGCCTG  950

seq1  GGAGAACGTGGGCTGTC-TGAAGCAGGGCTGTA-CACCAGGTCGGGTCTG  996
      ||||||||||||||||| ||||||| ||||||| ||||||||| ||||||
seq2  GGAGAACGTGGGCTGTCTTGAAGCA-GGCTGTACCACCAGGTC-GGTCTG  998

seq1  GAG-ACAGGTCAGGAGGACAAGCAAAG-CCAACGGTCTGGCAGCAGTTCC  1044
      ||| ||||||||||||||||||| ||| ||||||   |||||||||||||
seq2  GAGAACAGGTCAGGAGGACAAGCCAAGCCCAACGTCTTGGCAGCAGTTCC  1048

seq1  ACAG-CAGCTG-ATAG-TCAAA-CGAGGTACACTAGGAAGTGACGTCAT-  1089
      |||| |||||| |||| ||||| |||| ||||||| ||||||||||||| 
seq2  ACAGCCAGCTGAATAGTTCAAACCGAGCTACACTA-GAAGTGACGTCATG  1097

seq1  GGAGAGGGGACTGAGGGTGTAT-GAAAG-AGATAAATGAAGTTCTTAACA  1137
      ||| ||||||||||  |||||| ||||| ||||||   |||||| |||| 
seq2  GGAAAGGGGACTGA-CGTGTATGGAAAGAAGATAATGAAAGTTCCTAAC-  1145

seq1  GAAGTAAGGAGGGAGACCAAGGCTAGTCAGAAA  1170
       |||||||||||   ||||  ||||||||||||
seq2  CAAGTAAGGAGG--AACCA--GCTAGTCAGAAA  1174

seq1: chr8_27292888_27293036
seq2: B6Ng01-281K14.g_72_220 (reverse)

seq1  CACTCCCCCTCCCCCCCACAAGGGCCCACATGCTTAAAATTAAAGAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCCTCCCCCCCACAAGGGCCCACATGCTTAAAATTAAAGAAGCT  50

seq1  ATCAGATGATGGAAAGACCTTCCATTTTCTTGCATTGACAGAATTAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGATGGAAAGACCTTCCATTTTCTTGCATTGACAGAATTAATAT  100

seq1  TGTGAAAAGATTATATTGCCGAATATGATCTCTCTCTGACTCTGTCTCT  149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGATTATATTGCCGAATATGATCTCTCTCTGACTCTGTCTCT  149