BAC Information

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BAC

Clone NameB6Ng01-285B10
Chromosome8 (Build37)
Map Location 115,386,372 - 115,519,953
singlet/doubletdoublet
Overlap geneCntnap4, LOC100042061
Upstream geneTmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneMon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285B10.bB6Ng01-285B10.g
ACCGA083628GA083629
length1,1201,114
definitionB6Ng01-285B10.b B6Ng01-285B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,386,372 - 115,387,502)(115,518,838 - 115,519,953)
sequence
gaattcttttctcttcaataaactcttaccattggggaaagtttttttaa
aggccaaaaagaaacaaaaacaaaaaactagttagacccttagttaaaaa
cagaacacaaatttgcaacttgactttgagaaatctctgtgcctacttca
gggaagtgtttctattgttttaggctggtgtggaggtatttgtgttagcc
ttggtgaattggtggtttaggtttggatgcataaagaaggtgttgttcag
atcatttcttttcataacaacagtgttttattccacttatagcaatagca
ctgcacagaaagccaacgggaatttgagaaagaatgaaatcctgtcattt
ggggtaaaatagatagaactggaggtcatcggattaaaggaagttagcca
ggcacagaaaggcaaatgctctatgtcacccactgcatgaggatgctcaa
aagagtcaatctgactgcaaaataaagatgactagaggttgctgaaaggg
tgaagagatgcttacagtaagatagaaagagtaaggttccattgcacagt
ggggtgtagacagttcacaataacctagtatttattccatgaggaaccag
aagagaggcatttctaggctccaaatataaagaaataataagaaaatcaa
tatgctggacccttgatttggtcaaaacttaccataaacatgtgttaaaa
tatcacactgaattccacagatatgtaaatgaggcaggttaataaaaatt
tatttttaaattcaattttaagtaaaattgaaactccgcctacattttca
ttatgagaccaagtcaacaactgtaagtagcagcagcaagaaaatcgtag
ccataatccatcccattcttattttagctgtagggctaatttcttccctg
ttacttcatgactctgtgctatggggcaaatagatggggagcactgagac
cccaagacaagcacgtgagccatagggagttaccaggagatgggagccac
accctgagctgagacagtctgtgataacttacttgataagcaagtcaaga
gtctaccactgagccttaagctgtacatggtattctattcatatcactaa
gttagcatccgatcttcttt
gaattctatccagtcaaacagcttattcaatattgacttccctgattaca
gaatttgtttgtttgtttgttttgttttctcttttgacctcacagctttc
aggaaattttatccatctgttttttgttgttgttgtttattctgtttgtt
ttgtttgtcattgtccttgttgttgtggtttatgccataacaaattcata
aagttagttttcccttgattttctttctaccttttgtgcttgtgacttta
attatgatagtttgttttttttctttgttcttggaatgtttttgttttta
aaaaaatcctagacaaatcaggttttttgttttgttttgtttttcactct
tccatgcacatgacacatatcctaaatgtatcaagctgagcttggtaata
tcaaggcatattatgctgagaaaaactttcctgtctccggcctcctcccc
gaaggagaaggccatgtgctgtacaggctctgtgtggtgagcaaaggact
tcggttgaacttcctaacaaagtggtaatccatcctcaacccaaattggt
tgaacacaacaaccatcattgtttccatttcatttaatgcccataaaaat
gaattcactcgaatccaacagatataggctcagaatatttgtgctggatg
caaagacccatctcattctattttgtgtttgcgttttattaaagaacact
tacacaggaataaaaagagacgttcagacccattacaatttaagttactt
tgaaatttcttgctattccaagctcacatcactaattttgtacagctaat
gtccatatacttatatggttattttaacataagcgaattttactattact
gtatacttttatgataatatccattgcacttataaaattacatcaaatga
ttggcagagtctcctcagctactgctctattatgagacatttaggttgct
tctccttcaaatgaatgatgaaaattaacttgtagtttaatgcccagaac
aaatgattttccccattgccatttggtttagaacatatattctgtaggtt
ggcatttcttggttcaaaagtaatgccacttgtataaatgactggctatg
gaattttttatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_115386372_115387502
seq2: B6Ng01-285B10.b_47_1166

seq1  GAATTCTTTTCTCTTCAATAAACTCTTACCATTGGGGAAAGTTTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCTTCAATAAACTCTTACCATTGGGGAAAGTTTTTTTAA  50

seq1  AGGCCAAAAAGAAACAAAAACAAAAAACTAGTTAGACCCTTAGTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAAGAAACAAAAACAAAAAACTAGTTAGACCCTTAGTTAAAAA  100

seq1  CAGAACACAAATTTGCAACTTGACTTTGAGAAATCTCTGTGCCTACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACAAATTTGCAACTTGACTTTGAGAAATCTCTGTGCCTACTTCA  150

seq1  GGGAAGTGTTTCTATTGTTTTAGGCTGGTGTGGAGGTATTTGTGTTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGTTTCTATTGTTTTAGGCTGGTGTGGAGGTATTTGTGTTAGCC  200

seq1  TTGGTGAATTGGTGGTTTAGGTTTGGATGCATAAAGAAGGTGTTGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAATTGGTGGTTTAGGTTTGGATGCATAAAGAAGGTGTTGTTCAG  250

seq1  ATCATTTCTTTTCATAACAACAGTGTTTTATTCCACTTATAGCAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTTTTCATAACAACAGTGTTTTATTCCACTTATAGCAATAGCA  300

seq1  CTGCACAGAAAGCCAACGGGAATTTGAGAAAGAATGAAATCCTGTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAAAGCCAACGGGAATTTGAGAAAGAATGAAATCCTGTCATTT  350

seq1  GGGGTAAAATAGATAGAACTGGAGGTCATCGGATTAAAGGAAGTTAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAAATAGATAGAACTGGAGGTCATCGGATTAAAGGAAGTTAGCCA  400

seq1  GGCACAGAAAGGCAAATGCTCTATGTCACCCACTGCATGAGGATGCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAAAGGCAAATGCTCTATGTCACCCACTGCATGAGGATGCTCAA  450

seq1  AAGAGTCAATCTGACTGCAAAATAAAGATGACTAGAGGTTGCTGAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAATCTGACTGCAAAATAAAGATGACTAGAGGTTGCTGAAAGGG  500

seq1  TGAAGAGATGCTTACAGTAAGATAGAAAGAGTAAGGTTCCATTGCACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATGCTTACAGTAAGATAGAAAGAGTAAGGTTCCATTGCACAGT  550

seq1  GGGGTGTAGACAGTTCACAATAACCTAGTATTTATTCCATGAGGAACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTAGACAGTTCACAATAACCTAGTATTTATTCCATGAGGAACCAG  600

seq1  AAGAGAGGCATTTCTAGGCTCCAAATATAAAGAAATAATAAGAAAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGCATTTCTAGGCTCCAAATATAAAGAAATAATAAGAAAATCAA  650

seq1  TATGCTGGACCCTTGATTTGGTCAAAACTTACCATAAACATGTGTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGACCCTTGATTTGGTCAAAACTTACCATAAACATGTGTTAAAA  700

seq1  TATCACACTGAATTCCACAGATATGTAAATGAGGCAGGTTAATAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACTGAATTCCACAGATATGTAAATGAGGCAGGTTAATAAAAATT  750

seq1  TATTTTTAAATTCAATTTTAAGTAAAATTGAAACTCCGCCTACATTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATTCAATTTTAAGTAAAATTGAAACTCCGCCTACATTTTCA  800

seq1  TTATGAGACCAAGTCAACAACTGTAAGTAGCAGCAGCAAGAAAATCGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGACCAAGTCAACAACTGTAAGTAGCAGCAGCAAGAAAATCGTAG  850

seq1  CCATAATCCATCCCATTCTTATTTTAGCTGTAGGGCTAATTTCTTCCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCCATCCCATTCTTATTTTAGCTGTAGGGCTAATTTCTTCCCTG  900

seq1  TTACTTCATGACTCTGTGCTATGGGGCAAATAGATGGGGAGCACTGAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATGACTCTGTGCTATGGGGCAAATAGATGGGGAGCACTGAGAC  950

seq1  CCCAAGACAAAGGCACGGTGAGGCATAGGGGAGGTACCAGGAGAT-GGAG  999
      ||||||||||  |||| ||||| |||| ||||| ||||||||||| ||||
seq2  CCCAAGACAA--GCAC-GTGAGCCATA-GGGAGTTACCAGGAGATGGGAG  996

seq1  CCACACCCTGAGCTGAGGACAGTCTGTTGAAAACCTTACTTGATAAGCAA  1049
      |||||||||||||||| ||||||||| ||| || |||||||||||||| |
seq2  CCACACCCTGAGCTGA-GACAGTCTG-TGATAA-CTTACTTGATAAGC-A  1042

seq1  AGTCAAAGAGGTCTACCACTGAGCC-TAAG-TGTACATGGGTAATTCTAT  1097
      |||| |||| ||||||||||||||| |||| |||||||||   |||||||
seq2  AGTC-AAGA-GTCTACCACTGAGCCTTAAGCTGTACATGG--TATTCTAT  1088

seq1  TCATACAACTAAAGGTTAGCATCCCATCTTCTTT  1131
      |||||  |||||  |||||||||| |||||||||
seq2  TCATATCACTAA--GTTAGCATCCGATCTTCTTT  1120

seq1: chr8_115518838_115519953
seq2: B6Ng01-285B10.g_69_1182 (reverse)

seq1  TATATATTTAAAAATT-CATAGCAAGTCA-TTATACAAGT-GCATAACTT  47
      ||||||   ||||||| |||||| ||||| |||||||||| |||| ||||
seq2  TATATA---AAAAATTCCATAGCCAGTCATTTATACAAGTGGCATTACTT  47

seq1  TTG-ACCCAGAAATGCCAACCTACAGAATATAATTGTTCTAAACCAAATG  96
      ||| ||| ||||||||||||||||||||||||  ||||||||||||||||
seq2  TTGAACCAAGAAATGCCAACCTACAGAATATA--TGTTCTAAACCAAATG  95

seq1  GCAATGGGGAAAAATTCATTTG-TCTGGGCATTAAACTACAAGTTAATTT  145
      |||||||||||||  ||||||| |||||||||||||||||||||||||||
seq2  GCAATGGGGAAAA--TCATTTGTTCTGGGCATTAAACTACAAGTTAATTT  143

seq1  TCATCATTCATTTGAAGGAGAAGCAACCTAAATGTCTCATAATAGAGCAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCATTTGAAGGAGAAGCAACCTAAATGTCTCATAATAGAGCAG  193

seq1  TAGCTGAGGAGACTCTGCCAATCATTTGATGTAATTTTATAAGTGCAATG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGAGACTCTGCCAATCATTTGATGTAATTTTATAAGTGCAATG  243

seq1  GATATTATCATAAAAGTATACAGTAATAGTAAAATTCGCTTATGTTAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATCATAAAAGTATACAGTAATAGTAAAATTCGCTTATGTTAAAA  293

seq1  TAACCATATAAGTATATGGACATTAGCTGTACAAAATTAGTGATGTGAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATATAAGTATATGGACATTAGCTGTACAAAATTAGTGATGTGAGC  343

seq1  TTGGAATAGCAAGAAATTTCAAAGTAACTTAAATTGTAATGGGTCTGAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAGCAAGAAATTTCAAAGTAACTTAAATTGTAATGGGTCTGAAC  393

seq1  GTCTCTTTTTATTCCTGTGTAAGTGTTCTTTAATAAAACGCAAACACAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTTTATTCCTGTGTAAGTGTTCTTTAATAAAACGCAAACACAAA  443

seq1  ATAGAATGAGATGGGTCTTTGCATCCAGCACAAATATTCTGAGCCTATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGAGATGGGTCTTTGCATCCAGCACAAATATTCTGAGCCTATAT  493

seq1  CTGTTGGATTCGAGTGAATTCATTTTTATGGGCATTAAATGAAATGGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATTCGAGTGAATTCATTTTTATGGGCATTAAATGAAATGGAAA  543

seq1  CAATGATGGTTGTTGTGTTCAACCAATTTGGGTTGAGGATGGATTACCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGTTGTTGTGTTCAACCAATTTGGGTTGAGGATGGATTACCAC  593

seq1  TTTGTTAGGAAGTTCAACCGAAGTCCTTTGCTCACCACACAGAGCCTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGAAGTTCAACCGAAGTCCTTTGCTCACCACACAGAGCCTGTA  643

seq1  CAGCACATGGCCTTCTCCTTCGGGGAGGAGGCCGGAGACAGGAAAGTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATGGCCTTCTCCTTCGGGGAGGAGGCCGGAGACAGGAAAGTTTT  693

seq1  TCTCAGCATAATATGCCTTGATATTACCAAGCTCAGCTTGATACATTTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCATAATATGCCTTGATATTACCAAGCTCAGCTTGATACATTTAG  743

seq1  GATATGTGTCATGTGCATGGAAGAGTGAAAAACAAAACAAAACAAAAAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGTCATGTGCATGGAAGAGTGAAAAACAAAACAAAACAAAAAAC  793

seq1  CTGATTTGTCTAGGATTTTTTTAAAAACAAAAACATTCCAAGAACAAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTCTAGGATTTTTTTAAAAACAAAAACATTCCAAGAACAAAGA  843

seq1  AAAAAAACAAACTATCATAATTAAAGTCACAAGCACAAAAGGTAGAAAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAACTATCATAATTAAAGTCACAAGCACAAAAGGTAGAAAGA  893

seq1  AAATCAAGGGAAAACTAACTTTATGAATTTGTTATGGCATAAACCACAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGGGAAAACTAACTTTATGAATTTGTTATGGCATAAACCACAAC  943

seq1  AACAAGGACAATGACAAACAAAACAAACAGAATAAACAACAACAACAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGACAATGACAAACAAAACAAACAGAATAAACAACAACAACAAAA  993

seq1  AACAGATGGATAAAATTTCCTGAAAGCTGTGAGGTCAAAAGAGAAAACAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGGATAAAATTTCCTGAAAGCTGTGAGGTCAAAAGAGAAAACAA  1043

seq1  AACAAACAAACAAACAAATTCTGTAATCAGGGAAGTCAATATTGAATAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAATTCTGTAATCAGGGAAGTCAATATTGAATAAG  1093

seq1  CTGTTTGACTGGATAGAATTC  1116
      |||||||||||||||||||||
seq2  CTGTTTGACTGGATAGAATTC  1114