BAC Information

Click to search

BAC

Clone NameB6Ng01-285K12
Chromosome8 (Build37)4 (Build37)
Map Location 53,115,467 - 53,115,78318,575,728 - 18,576,883
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285K12.bB6Ng01-285K12.g
ACCGA084050GA084051
length3351,164
definitionB6Ng01-285K12.b B6Ng01-285K12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,115,467 - 53,115,783)(18,575,728 - 18,576,883)
sequence
tttgtttagctctgtgccccatttttaatagggttatttggttctttgga
gtcttaacttcttgagttctttgtatatattggattttagccctctattg
aatgtaggagtggtagagaacttttcccagtctgtaggttgtctctttgt
cttcttggcagtgtccttagtgttacagaagcttttcagtttcgtgaggt
cctatttgtcaattgttgaacgtagaatctgagccggtagtgttctgttc
aaggaatctttccctgtgcctctgtgtcaagtctccttctaactttctat
tctactagattcagtgtatctggttttatgtggag

gaattctttaggtcaagtgtcatttttaccttttggaactgaaatacttc
agaatttgattttttttttttgaaaaaataggagactgtggtccaaaatt
tagaaagtactgtggaacatttacacagatactgttacttaattaatcca
tttgcacatctattgccaatattaaaaagaatgatagaaaaatatattaa
aaatcatataactggggcacttcttactacaacttataggtctatgttct
gaatcctttgtgatttgatggtaataaactaagaatggcaaactttcata
aaatatccactaaagttaaaaacaaattatcttctagtaatcatgtctct
atccctatagggccaggatggccaccagatggcactcagatttcaaatga
caattcaacttagacagttcagtactccgaactctttattgtctcttaaa
ctttgtaacaggaggatttctttgtttttatttcacttctctaaatactt
tgaagttcaacaagacaaacttgaatttactgtacaacacaattaacagt
cacagactcaatataggtttaataatttgtacatgttggttttactgtga
taaaaacaagcatttttcttttaatttccactctatacctagaatatttt
tcaaaaatagcctgaaaactaaaacaaagatttctcatgatatgagactt
cctataacaaagccacaataaacatccattaaaaaatataccttgaaaag
acaatttttgactgtactaagtatttgtcctctacataaatgggtgttta
atgtcaatggaatttttgaaataacacgcaatatgtactacagtttctta
aattactgtagcccatccaaaatgttcttatttataatatgcaatatgag
agaaatatggtacaacgaataaaggaaccatgaagcaatttcacagggct
tcatgtttcaaaataatgcagtgttttaaaagaatctccaaacttgaaaa
aacatgctgtgaaatttaagttataaattttaaacattagttgcaatgtt
agtgaaccgcctactaagcagtaaaaatagtcatctctctaggatgaata
ccctatgggtgggatttttattttaatcccaatcctcaatggtaattaaa
gcgagtcagcttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53115467_53115783
seq2: B6Ng01-285K12.b_69_385 (reverse)

seq1  CTCCACATAAAACCAGATACACTGAATCTAATAGAAGAGAAAGTGGGGAA  50
      |||||||||||||||||||||||||||||| ||||| |||||||  | | 
seq2  CTCCACATAAAACCAGATACACTGAATCTAGTAGAATAGAAAGTTAGAAG  50

seq1  TAGCCTAGAACACTTGAGCACAGGGGGAAAG-TTCC-TGAACAGAAAAAG  98
       || || | ||||    |||||  ||||||| |||| ||||||||| |  
seq2  GAGACTTG-ACACAGAGGCACA--GGGAAAGATTCCTTGAACAGAACACT  97

seq1  AATGAATTCTGTTCTAAGATCAACAATAGACAACTAGGACTTCATAAAAT  148
      |  |  |    ||||| | |||||||| ||||| |||||| |||  ||| 
seq2  ACCGGCTCAGATTCTACGTTCAACAATTGACAAATAGGACCTCACGAAAC  147

seq1  TGCAAAGTTTTTGTGAGACAAAGGTCACTCTTAGTAGGACAAAATGGCAA  198
      || |||| || ||| | || |||| ||||   |  | ||||||  | |||
seq2  TGAAAAGCTTCTGTAACACTAAGGACACTGCCAAGAAGACAAAGAGACAA  197

seq1  TGATTAAACTGGGCAAAGATCTTTACCAATCTTTAATTTGATAAAGGGAA  248
           | |||||| |||| ||| ||||| || |  |||  ||| ||||  
seq2  CCTACAGACTGGGAAAAGTTCTCTACCACTCCTACATTCAATAGAGGGCT  247

seq1  AATAGTCAATATATACAAAGAACTCAAGAAGTT-TGACTCCAGAGAACCA  297
      || |  |||||||||||||||||||||||||||  ||||||| |||||||
seq2  AAAATCCAATATATACAAAGAACTCAAGAAGTTAAGACTCCAAAGAACCA  297

seq1  AATAACCCTATTAAAAATGG  317
      ||||||||||||||||||||
seq2  AATAACCCTATTAAAAATGG  317


seq1: chr4_18575728_18576883
seq2: B6Ng01-285K12.g_67_1230 (reverse)

seq1  GTAAGCTGCATCGCTTTAATTACCATTTGAAGA-TGGGAT--AAATAAAA  47
      ||||||||  ||||||||||||||| |||| || ||||||  ||||||||
seq2  GTAAGCTGACTCGCTTTAATTACCA-TTGAGGATTGGGATTAAAATAAAA  49

seq1  TT--CAACCATA-GGTATTCATC---TAGAGATGACTAATTTTACTTGCT  91
       |  || ||||| ||||||||||    ||||||||||| |||||| ||||
seq2  ATCCCACCCATAGGGTATTCATCCTAGAGAGATGACTATTTTTAC-TGCT  98

seq1  AAGTAG--CGTTCACTAACATTGC-ACTAATGTTTAAAATTTAT-ACTTA  137
       |||||   ||||||||||||||| ||||||||||||||||||| |||||
seq2  TAGTAGGCGGTTCACTAACATTGCAACTAATGTTTAAAATTTATAACTTA  148

seq1  AAATTTTCACAGCATGTTTTTTCAAGTTTGGAGATTCTTTTTAAAACACT  187
      ||  ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AA--TTTCACAGCATGTTTTTTCAAGTTTGGAGATTC-TTTTAAAACACT  195

seq1  GCATTATTTTGAAACATGAAGCCCTGTGAATTTGCTTCATGGTTCCTTTA  237
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCATTATTTTGAAACATGAAGCCCTGTGAAATTGCTTCATGGTTCCTTTA  245

seq1  TTCGTTGTACCATATTTCTCTCATATTGCATATTATAAATAAGAACATTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGTACCATATTTCTCTCATATTGCATATTATAAATAAGAACATTT  295

seq1  TGGATGGGCTACAGTAATTTAAGAAACTGTAGTACATATTGCGTGTTATT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGCTACAGTAATTTAAGAAACTGTAGTACATATTGCGTGTTATT  345

seq1  TCAAAAATTCCATTGACATTAAACACCCATTTATGTAGAGGACAAATACT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTCCATTGACATTAAACACCCATTTATGTAGAGGACAAATACT  395

seq1  TAGTACAGTCAAAAATTGTCTTTTCAAGGTATATTTTTTAATGGATGTTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGTCAAAAATTGTCTTTTCAAGGTATATTTTTTAATGGATGTTT  445

seq1  ATTGTGGCTTTGTTATAGGAAGTCTCATATCATGAGAAATCTTTGTTTTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCTTTGTTATAGGAAGTCTCATATCATGAGAAATCTTTGTTTTA  495

seq1  GTTTTCAGGCTATTTTTGAAAAATATTCTAGGTATAGAGTGGAAATTAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGGCTATTTTTGAAAAATATTCTAGGTATAGAGTGGAAATTAAA  545

seq1  AGAAAAATGCTTGTTTTTATCACAGTAAAACCAACATGTACAAATTATTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGCTTGTTTTTATCACAGTAAAACCAACATGTACAAATTATTA  595

seq1  AACCTATATTGAGTCTGTGACTGTTAATTGTGTTGTACAGTAAATTCAAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATTGAGTCTGTGACTGTTAATTGTGTTGTACAGTAAATTCAAG  645

seq1  TTTGTCTTGTTGAACTTCAAAGTATTTAGAGAAGTGAAATAAAAACAAAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGTTGAACTTCAAAGTATTTAGAGAAGTGAAATAAAAACAAAG  695

seq1  AAATCCTCCTGTTACAAAGTTTAAGAGACAATAAAGAGTTCGGAGTACTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCCTGTTACAAAGTTTAAGAGACAATAAAGAGTTCGGAGTACTG  745

seq1  AACTGTCTAAGTTGAATTGTCATTTGAAATCTGAGTGCCATCTGGTGGCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTAAGTTGAATTGTCATTTGAAATCTGAGTGCCATCTGGTGGCC  795

seq1  ATCCTGGCCCTATAGGGATAGAGACATGATTACTAGAAGATAATTTGTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCCCTATAGGGATAGAGACATGATTACTAGAAGATAATTTGTTT  845

seq1  TTAACTTTAGTGGATATTTTATGAAAGTTTGCCATTCTTAGTTTATTACC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTAGTGGATATTTTATGAAAGTTTGCCATTCTTAGTTTATTACC  895

seq1  ATCAAATCACAAAGGATTCAGAACATAGACCTATAAGTTGTAGTAAGAAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCACAAAGGATTCAGAACATAGACCTATAAGTTGTAGTAAGAAG  945

seq1  TGCCCCAGTTATATGATTTTTAATATATTTTTCTATCATTCTTTTTAATA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTTATATGATTTTTAATATATTTTTCTATCATTCTTTTTAATA  995

seq1  TTGGCAATAGATGTGCAAATGGATTAATTAAGTAACAGTATCTGTGTAAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATAGATGTGCAAATGGATTAATTAAGTAACAGTATCTGTGTAAA  1045

seq1  TGTTCCACAGTACTTTCTAAATTTTGGACCACAGTCTCCTATTTTTTCAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACAGTACTTTCTAAATTTTGGACCACAGTCTCCTATTTTTTCAA  1095

seq1  AAAAAAAAAATCAAATTCTGAAGTATTTCAGTTCCAAAAGGTAAAAATGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCAAATTCTGAAGTATTTCAGTTCCAAAAGGTAAAAATGA  1145

seq1  CACTTGACCTAAAGAATTC  1156
      |||||||||||||||||||
seq2  CACTTGACCTAAAGAATTC  1164


| Home | SequenceCutter | Blast | Download |