BAC Information

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BAC

Clone NameB6Ng01-285N17
Chromosome8 (Build37)
Map Location 54,826,801 - 54,945,888
singlet/doubletdoublet
Overlap geneLOC100040107
Upstream geneLOC676688, Aga, Neil3
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285N17.bB6Ng01-285N17.g
ACCGA084199GA084200
length1,096996
definitionB6Ng01-285N17.b B6Ng01-285N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,826,801 - 54,827,903)(54,944,892 - 54,945,888)
sequence
gaattctcataaacattttcagaaataatttgagttatttggtattaaaa
tttatgtctgggggctagagaaatggctaagtggttaagagcactggctt
gtcttccagagatcctgagttcaattctcagcaaccacatggctcacatc
tatctgtgatagaccctgatgctctctttctgtatgtctaaagacagcaa
cagtggactcctgtacgtaaaataaatacatctgaaaaaagttatgttac
aaatatgtctaatgttaatacaattgcaactctcttgtagggaaggccat
gcccaagccttcaattgtgctctcagtttcttcttgagtatcttttcatt
cttaatatgtttcaactctatcacacacttgcttgttttgaaattctctt
cttcactgaagtcacatatcactggttagcttgtatagaaatctttcaaa
agattaagggcactcctgaggcactgagagttagagcagaaaatggagcc
acttcttcctcagtgtcaacagagatagtgattggtcagcaaaggtgttg
gatgcacaggttggccagtatcatgtgaaatcattgtagtgaagtatttt
gctcattagtgacctttattaatcagtatatgtacttagtcatacatgca
cagatacacgcagttatattttcttattccccaccctaaggatcatactt
atctagtaccattctagatatctaggaagtaacgaaggcattacttacaa
tattgatattgggccactagggtagactttttcagaaaaatccactgaga
aatttcagtgtgaaaacatgaaactaacccaaaggtcagaggaaagtgga
cattaaaacaaagggctgaagcagaagtattgcttaatatgtgtccacca
ctgttaaaaacacactatttacatgatctcatttgtatctgtggataggt
tattattgaccctaattattaacagagaaaccgccatcatttgatatctg
tttatatcacacagttaaaagtggtaaagctaggatactcatatagctca
atgactcagtatgcagcagttacttttaaaatactgatccaagtaa
gaattctgtgggtcggtcttggttacatgcctttacaaatcagtgctcaa
gttagatgcccatctcttgttttctactgtaattcctaacaatgaatgct
ccaaagttgtctgttggcctgaggaaggagagcattgaggggagtcttag
ctcactcagagtgaacatgtttggaaagagatttatcattcctttgtgaa
ttcactatgacttaaagtcattcattgtatgacctagatcattctctgat
ttatgtactgaaaataaacaatcttcagtcttgatagggtctgttttttc
atttcatcatctaataacatattttggcctcacatcatttctttttcatt
gaggaagatccaatcttttcttattttacacaccaattccttcagtaact
ttgcttttgttagccccaacccttttatttctagttaactttttcaacct
ggtcccagtggcctcaaccatgcagaatgtttctaattcattttttataa
aattcaaattttaaagaagatatgagcataactttaaattaaatattact
gccgaaaaatacaattagtgtatgcttcttccagacactattttaaaaat
aatcaatattaagatagtttgcagtaaaactgtcttatgcctggacttct
ttagtcatatttacaattcatggcaaaaaaagggccaatgttactgtatc
aggttttactactgagaacaaagtgttcaaggattttcttttatttaaaa
taatcattaatttttttcctttccccccttttttcgtttatttttacaac
ctgttaggatgcaatcagatagccttccaatatgtgaacgaagtacaaaa
agtgcttaattttcctgcgtcttcagcggccaagaagggaaagcactata
tatagcagtgattgcttctgctgtttctgaaggatgagtcactgagttgg
gttcagccatggttttggtcacatctgcatttcataacacacttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54826801_54827903
seq2: B6Ng01-285N17.b_48_1143

seq1  GAATTCTCATAAACATTTTCAGAAATAATTTGAGTTATTTGGTATTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAAACATTTTCAGAAATAATTTGAGTTATTTGGTATTAAAA  50

seq1  TTTATGTCTGGGGGCTAGAGAAATGGCTAAGTGGTTAAGAGCACTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCTGGGGGCTAGAGAAATGGCTAAGTGGTTAAGAGCACTGGCTT  100

seq1  GTCTTCCAGAGATCCTGAGTTCAATTCTCAGCAACCACATGGCTCACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCAGAGATCCTGAGTTCAATTCTCAGCAACCACATGGCTCACATC  150

seq1  TATCTGTGATAGACCCTGATGCTCTCTTTCTGTATGTCTAAAGACAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGATAGACCCTGATGCTCTCTTTCTGTATGTCTAAAGACAGCAA  200

seq1  CAGTGGACTCCTGTACGTAAAATAAATACATCTGAAAAAAGTTATGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACTCCTGTACGTAAAATAAATACATCTGAAAAAAGTTATGTTAC  250

seq1  AAATATGTCTAATGTTAATACAATTGCAACTCTCTTGTAGGGAAGGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCTAATGTTAATACAATTGCAACTCTCTTGTAGGGAAGGCCAT  300

seq1  GCCCAAGCCTTCAATTGTGCTCTCAGTTTCTTCTTGAGTATCTTTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCCTTCAATTGTGCTCTCAGTTTCTTCTTGAGTATCTTTTCATT  350

seq1  CTTAATATGTTTCAACTCTATCACACACTTGCTTGTTTTGAAATTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATGTTTCAACTCTATCACACACTTGCTTGTTTTGAAATTCTCTT  400

seq1  CTTCACTGAAGTCACATATCACTGGTTAGCTTGTATAGAAATCTTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGAAGTCACATATCACTGGTTAGCTTGTATAGAAATCTTTCAAA  450

seq1  AGATTAAGGGCACTCCTGAGGCACTGAGAGTTAGAGCAGAAAATGGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGGGCACTCCTGAGGCACTGAGAGTTAGAGCAGAAAATGGAGCC  500

seq1  ACTTCTTCCTCAGTGTCAACAGAGATAGTGATTGGTCAGCAAAGGTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCTCAGTGTCAACAGAGATAGTGATTGGTCAGCAAAGGTGTTG  550

seq1  GATGCACAGGTTGGCCAGTATCATGTGAAATCATTGTAGTGAAGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACAGGTTGGCCAGTATCATGTGAAATCATTGTAGTGAAGTATTTT  600

seq1  GCTCATTAGTGACCTTTATTAATCAGTATATGTACTTAGTCATACATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTAGTGACCTTTATTAATCAGTATATGTACTTAGTCATACATGCA  650

seq1  CAGATACACGCAGTTATATTTTCTTATTCCCCACCCTAAGGATCATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACGCAGTTATATTTTCTTATTCCCCACCCTAAGGATCATACTT  700

seq1  ATCTAGTACCATTCTAGATATCTAGGAAGTAACGAAGGCATTACTTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTACCATTCTAGATATCTAGGAAGTAACGAAGGCATTACTTACAA  750

seq1  TATTGATATTGGGCCACTAGGGTAGACTTTTTCAGAAAAATCCACTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATATTGGGCCACTAGGGTAGACTTTTTCAGAAAAATCCACTGAGA  800

seq1  AATTTCAGTGTGAAAACATGAAACTAACCCAAAGGTCAGAGGAAAGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGTGTGAAAACATGAAACTAACCCAAAGGTCAGAGGAAAGTGGA  850

seq1  CATTAAAAC-AAGGGCTGAAGCAGAAGTATTGCTTAATATGTGTCCACCA  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAACAAAGGGCTGAAGCAGAAGTATTGCTTAATATGTGTCCACCA  900

seq1  CTGTTAAAAACACACTATTTACATGATCTCATTTGTATCTGTGGATAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTTAAAAACACACTATTTACATGATCTCATTTGTATCTGTGGATAGG-  949

seq1  TTATTATTGACCCTAATTATTAACAGAGAAACCGCCACCATTTGATATCT  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TTATTATTGACCCTAATTATTAACAGAGAAACCGCCATCATTTGATATC-  998

seq1  TGTTTAATATCACACAGTTAAAAAGTGGTAAAGCTAGGATACTCATATAG  1049
      ||||| ||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TGTTT-ATATCACACAGTT-AAAAGTGGTAAAGCTAGGATACTCATATA-  1045

seq1  GCTCAATGGACTCAGTATTGCAAGCAG-TACTTTAAAAATAACTGATCCA  1098
      ||||||| ||||||||| ||| ||||| |||||| ||||| |||||||||
seq2  GCTCAAT-GACTCAGTA-TGC-AGCAGTTACTTTTAAAAT-ACTGATCCA  1091

seq1  AGTAA  1103
      |||||
seq2  AGTAA  1096

seq1: chr8_54944892_54945888
seq2: B6Ng01-285N17.g_68_1063 (reverse)

seq1  ACAAGTGTGTAATGAAATGCAGAGGTGACCAAAACCATGGCTGAACCCAA  50
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAAGTGTGTTATGAAATGCAGATGTGACCAAAACCATGGCTGAACCCAA  50

seq1  CCTCAGTGACTCATCCTTCAGAAACAGCAGAAGCAATCACTGCTATATAT  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCAGTGACTCATCCTTCAGAAACAGCAGAAGCAATCACTGCTATATAT  99

seq1  AGTGCTTTCCCTTCTTGGCCGCTGAAGACGCAGGAAAATTAAGCACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCCCTTCTTGGCCGCTGAAGACGCAGGAAAATTAAGCACTTTT  149

seq1  TGTACTTCGTTCACATATTGGAAGGCTATCTGATTGCATCCTAACAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCGTTCACATATTGGAAGGCTATCTGATTGCATCCTAACAGGTT  199

seq1  GTAAAAATAAACGAAAAAAGGGGGGAAAGGAAAAAAATTAATGATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAAACGAAAAAAGGGGGGAAAGGAAAAAAATTAATGATTATTT  249

seq1  TAAATAAAAGAAAATCCTTGAACACTTTGTTCTCAGTAGTAAAACCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGAAAATCCTTGAACACTTTGTTCTCAGTAGTAAAACCTGAT  299

seq1  ACAGTAACATTGGCCCTTTTTTTGCCATGAATTGTAAATATGACTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACATTGGCCCTTTTTTTGCCATGAATTGTAAATATGACTAAAGA  349

seq1  AGTCCAGGCATAAGACAGTTTTACTGCAAACTATCTTAATATTGATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGCATAAGACAGTTTTACTGCAAACTATCTTAATATTGATTATT  399

seq1  TTTAAAATAGTGTCTGGAAGAAGCATACACTAATTGTATTTTTCGGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAGTGTCTGGAAGAAGCATACACTAATTGTATTTTTCGGCAGT  449

seq1  AATATTTAATTTAAAGTTATGCTCATATCTTCTTTAAAATTTGAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATTTAAAGTTATGCTCATATCTTCTTTAAAATTTGAATTTTA  499

seq1  TAAAAAATGAATTAGAAACATTCTGCATGGTTGAGGCCACTGGGACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGAATTAGAAACATTCTGCATGGTTGAGGCCACTGGGACCAGG  549

seq1  TTGAAAAAGTTAACTAGAAATAAAAGGGTTGGGGCTAACAAAAGCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGTTAACTAGAAATAAAAGGGTTGGGGCTAACAAAAGCAAAGT  599

seq1  TACTGAAGGAATTGGTGTGTAAAATAAGAAAAGATTGGATCTTCCTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGGAATTGGTGTGTAAAATAAGAAAAGATTGGATCTTCCTCAAT  649

seq1  GAAAAAGAAATGATGTGAGGCCAAAATATGTTATTAGATGATGAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAATGATGTGAGGCCAAAATATGTTATTAGATGATGAAATGAA  699

seq1  AAAACAGACCCTATCAAGACTGAAGATTGTTTATTTTCAGTACATAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACCCTATCAAGACTGAAGATTGTTTATTTTCAGTACATAAATC  749

seq1  AGAGAATGATCTAGGTCATACAATGAATGACTTTAAGTCATAGTGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGATCTAGGTCATACAATGAATGACTTTAAGTCATAGTGAATTC  799

seq1  ACAAAGGAATGATAAATCTCTTTCCAAACATGTTCACTCTGAGTGAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAATGATAAATCTCTTTCCAAACATGTTCACTCTGAGTGAGCTA  849

seq1  AGACTCCCCTCAATGCTCTCCTTCCTCAGGCCAACAGACAACTTTGGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCCTCAATGCTCTCCTTCCTCAGGCCAACAGACAACTTTGGAGC  899

seq1  ATTCATTGTTAGGAATTACAGTAGAAAACAAGAGATGGGCATCTAACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGTTAGGAATTACAGTAGAAAACAAGAGATGGGCATCTAACTTG  949

seq1  AGCACTGATTTGTAAAGGCATGTAACCAAGACCGACCCACAGAATTC  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGATTTGTAAAGGCATGTAACCAAGACCGACCCACAGAATTC  996