BAC Information

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BAC

Clone NameB6Ng01-287E03
Chromosome8 (Build37)
Map Location 111,909,894 - 112,039,385
singlet/doubletdoublet
Overlap geneLOC100042829, Pmfbp1
Upstream geneAtbf1, 4922502B01Rik, Gm1943
Downstream geneDhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287E03.bB6Ng01-287E03.g
ACCGA085231GA085232
length1,1181,151
definitionB6Ng01-287E03.b B6Ng01-287E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,038,250 - 112,039,385)(111,909,894 - 111,911,050)
sequence
gaattctgcctccagtaggaggaagacagataaggaaggatcctgaacct
tgtgtacctcaccttggctcctgcaaatggacgcttcaattagtggggga
gggttgggatggtcagcgaatgattcgggggccccaggagggtcacatac
ataagtgtaaaattaaagccacatctcatttcctatgcacatttggactg
aaaactagagacataaaattgaaaacttacaaaactaattttaaaaaccc
aaaaaccaaaaaaacctttttatgattttgggtgtcaaggaggccttccc
aggctttttttttttcttttcttttttttttcttttttcttccaaaatga
gctgtaaagcccggaatctataggggtgtgagagttcgactccatggatg
cttaaagcttgcacatgataaaaacgtcattgataaagccaagtgacatg
ctatgggcggtggggaatacttgcaacatagcaaagaaagtttattatag
atattaagacactcccgtaagtcaatacaaaaggattaaaactactaatt
cagtggaagatccctttggtagtgaaaagctacctagggattcttgtcta
gctgttgcaagggctgctgttagctgcagtccacgtcagggcctttcctg
actgctttgccagagtcacagaggggcagcccgcactcagtagttgataa
cacgcagatggccaggtggctttccccccaactccagctctgggtctttc
tgcagctccctgtctctctctggagtgggtggaggccttcgggagactgc
aagggcctctttcctctttgtgtaacctagctgtgctccgctttctcctg
caagtgaatgccaagatctctgtctacaaacacttgcatgcaaatctacc
tgggccttttcctcgagaacccagctgacttctatcaggattaagagagt
gaggattgcattgagagacagcttctgcccctaccctttggtttaacaca
acttagagggatcaggaaaaaaatataagaccttttagtatctgtaatgt
atgacgtagacattttgcttatgttgatttagtactcaaaatgcccacat
cctgaatgtagcgagtcc
gaattcatgcatgagttctgtatttacataattttcagccctcccttgcc
ccactaactcctcctctaccctcttaagttcacatcctctttttttgtta
ttatcacacacgcacaagcacatacacgtacaacctgcagcatccatttg
ttcttgcttgcatgtatacatatttagggctaaccacttggaattaaata
aaatatggggccgggggctcattcttgctcccttcggtggctgataatta
cctatagctcttcatcatggagtggggccttgtgaagttttctccattcg
tgttgggcgtgggattgtcactgttcgagtcttgtttaggcaactgtatt
aatgacacttcacgggtacagctcccctgtcatatgtagaagacaacatc
tcatagcagatgtcctggttttctggatcttatgatatacctgcccttct
ctcataagatatcccagagccttaggagtaataatagtcttgtacatgga
gcagttagtgttgggcaacggatgatcagctgttctttgcattttgacat
ggatttctgtgatggtttccattcgctgcaataataagcgtctctggggg
gaggtaagagctacacttatcagtgagtgtgaagataagtattcaggatg
tggttagaaattacactagtttaataaagtggcagtagtaggggctcttt
tagggtccatgacctcaccagctgtgggtggttgcctgggtttacagcac
caggcataaattctctcctgttgagaagaccttgactccaattaaacagc
tcttggctatccccacaatatgtgtgccactactgcaccctggtatatac
tgcaccctggcatatactgcaccctggtataatactgtaccctggtatat
actgcaccctggtatatactataccctggtataatactgctctctggtat
atgctgcaccctggtatatactgtacccggtataatactgctctcctcgt
atatgctgcaccctggtatacactgcacctggtatatactgcaccctgta
tatactgctctctggtgtatataactgaaccttgtatactgcacttaata
atgctgcaccctgtatatactgcaccccgatatactgcaacctggatata
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112038250_112039385
seq2: B6Ng01-287E03.b_47_1164 (reverse)

seq1  GGACT-GCTACATCAAAGGATGTGCGCATTTTGAGTGAACATAAATACCA  49
      ||||| |||||||   |||||||| |||||||||||  || ||||| | |
seq2  GGACTCGCTACAT-TCAGGATGTGGGCATTTTGAGT--AC-TAAAT-CAA  45

seq1  CATAAACCAAAATGGTTCTACCGTTCAATAATTTTACCAGGAATAATTAA  99
      ||| || |||||||  |||||   |||   |||    |||  || | |||
seq2  CAT-AAGCAAAATG--TCTAC--GTCATACATT---ACAG--AT-ACTAA  84

seq1  AAGTTTTTATATTTTTTTTCCTGATCCTTCTAAGTTGTGTTAAACCAAAG  149
      ||| | ||||| ||||||||||||||| ||||||||||||||||||||||
seq2  AAGGTCTTATA-TTTTTTTCCTGATCCCTCTAAGTTGTGTTAAACCAAAG  133

seq1  GGTAGGGGGCAAGAAGCTGTCTCTCAATGCAATCCTCACTCTCTTTAATC  199
      ||||||||   |||||||||||||||||||||||||||||||| ||||||
seq2  GGTAGGGG--CAGAAGCTGTCTCTCAATGCAATCCTCACTCTC-TTAATC  180

seq1  CTGATAGAAGTCAGCTGGGTTCTCGAGGAAAAGGCCCAGGTAGATTTGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAAGTCAGCTGGGTTCTCGAGGAAAAGGCCCAGGTAGATTTGCA  230

seq1  TGCAAGTGTTTGTAGACAGAGATCTTGGCATTCACTTGCAGGAGAAAGCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGTTTGTAGACAGAGATCTTGGCATTCACTTGCAGGAGAAAGCG  280

seq1  GAGCACAGCTAGGTTACACAAAGAGGAAAGAGGCCC-TGCAGTCTCCCGA  348
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCACAGCTAGGTTACACAAAGAGGAAAGAGGCCCTTGCAGTCTCCCGA  330

seq1  AGGCCTCCACCCACTCCAGAGAGAGACAGGGAGCTGCAGAAAGACCCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCACCCACTCCAGAGAGAGACAGGGAGCTGCAGAAAGACCCAGA  380

seq1  GCTGGAGTTGGGGGGAAAGCCACCTGGCCATCTGCGTGTTATCAACTACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTTGGGGGGAAAGCCACCTGGCCATCTGCGTGTTATCAACTACT  430

seq1  GAGTGCGGGCTGCCCCTCTGTGACTCTGGCAAAGCAGTCAGGAAAGGCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCGGGCTGCCCCTCTGTGACTCTGGCAAAGCAGTCAGGAAAGGCCC  480

seq1  TGACGTGGACTGCAGCTAACAGCAGCCCTTGCAACAGCTAGACAAGAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGGACTGCAGCTAACAGCAGCCCTTGCAACAGCTAGACAAGAATC  530

seq1  CCTAGGTAGCTTTTCACTACCAAAGGGATCTTCCACTGAATTAGTAGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTAGCTTTTCACTACCAAAGGGATCTTCCACTGAATTAGTAGTTT  580

seq1  TAATCCTTTTGTATTGACTTACGGGAGTGTCTTAATATCTATAATAAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTTTGTATTGACTTACGGGAGTGTCTTAATATCTATAATAAACT  630

seq1  TTCTTTGCTATGTTGCAAGTATTCCCCACCGCCCATAGCATGTCACTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTATGTTGCAAGTATTCCCCACCGCCCATAGCATGTCACTTGG  680

seq1  CTTTATCAATGACGTTTTTATCATGTGCAAGCTTTAAGCATCCATGGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAATGACGTTTTTATCATGTGCAAGCTTTAAGCATCCATGGAGT  730

seq1  CGAACTCTCACACCCCTATAGATTCCGGGCTTTACAGCTCATTTTGGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCTCACACCCCTATAGATTCCGGGCTTTACAGCTCATTTTGGAAG  780

seq1  AAAAAAGAAAAAAAAAAGAAAAGAAAAAAAAAAAGCCTGGGAAGGCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAAAAAAGAAAAGAAAAAAAAAAAGCCTGGGAAGGCCTCC  830

seq1  TTGACACCCAAAATCATAAAAAGGTTTTTTTGGTTTTTGGGTTTTTAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCCAAAATCATAAAAAGGTTTTTTTGGTTTTTGGGTTTTTAAAA  880

seq1  TTAGTTTTGTAAGTTTTCAATTTTATGTCTCTAGTTTTCAGTCCAAATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGTAAGTTTTCAATTTTATGTCTCTAGTTTTCAGTCCAAATGT  930

seq1  GCATAGGAAATGAGATGTGGCTTTAATTTTACACTTATGTATGTGACCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGAAATGAGATGTGGCTTTAATTTTACACTTATGTATGTGACCCT  980

seq1  CCTGGGGCCCCCGAATCATTCGCTGACCATCCCAACCCTCCCCCACTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCCCCCGAATCATTCGCTGACCATCCCAACCCTCCCCCACTAAT  1030

seq1  TGAAGCGTCCATTTGCAGGAGCCAAGGTGAGGTACACAAGGTTCAGGATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCGTCCATTTGCAGGAGCCAAGGTGAGGTACACAAGGTTCAGGATC  1080

seq1  CTTCCTTATCTGTCTTCCTCCTACTGGAGGCAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTATCTGTCTTCCTCCTACTGGAGGCAGAATTC  1118

seq1: chr8_111909894_111911050
seq2: B6Ng01-287E03.g_67_1217

seq1  GAATTCATGCATGAGTTCTGTATTTACATAATTTTCAGCCCTCCCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCATGAGTTCTGTATTTACATAATTTTCAGCCCTCCCTTGCC  50

seq1  CCACTAACTCCTCCTCTACCCTCTTAAGTTCACATCCTCTTTTTTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAACTCCTCCTCTACCCTCTTAAGTTCACATCCTCTTTTTTTGTTA  100

seq1  TTATCACACACGCACAAGCACATACACGTACAACCTGCAGCATCCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACACACGCACAAGCACATACACGTACAACCTGCAGCATCCATTTG  150

seq1  TTCTTGCTTGCATGTATACATATTTAGGGCTAACCACTTGGAATTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTGCATGTATACATATTTAGGGCTAACCACTTGGAATTAAATA  200

seq1  AAATATGGGGCCGGGGGCTCATTCTTGCTCCCTTCGGTGGCTGATAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGGGCCGGGGGCTCATTCTTGCTCCCTTCGGTGGCTGATAATTA  250

seq1  CCTATAGCTCTTCATCATGGAGTGGGGCCTTGTGAAGTTTTCTCCATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCTCTTCATCATGGAGTGGGGCCTTGTGAAGTTTTCTCCATTCG  300

seq1  TGTTGGGCGTGGGATTGTCACTGTTCGAGTCTTGTTTAGGCAACTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCGTGGGATTGTCACTGTTCGAGTCTTGTTTAGGCAACTGTATT  350

seq1  AATGACACTTCACGGGTACAGCTCCCCTGTCATATGTAGAAGACAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTTCACGGGTACAGCTCCCCTGTCATATGTAGAAGACAACATC  400

seq1  TCATAGCAGATGTCCTGGTTTTCTGGATCTTATGATATACCTGCCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAGATGTCCTGGTTTTCTGGATCTTATGATATACCTGCCCTTCT  450

seq1  CTCATAAGATATCCCAGAGCCTTAGGAGTAATAATAGTCTTGTACATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGATATCCCAGAGCCTTAGGAGTAATAATAGTCTTGTACATGGA  500

seq1  GCAGTTAGTGTTGGGCAACGGATGATCAGCTGTTCTTTGCATTTTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGTGTTGGGCAACGGATGATCAGCTGTTCTTTGCATTTTGACAT  550

seq1  GGATTTCTGTGATGGTTTCCATTCGCTGCAATAATAAGCGTCTCTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGTGATGGTTTCCATTCGCTGCAATAATAAGCGTCTCTGGGGG  600

seq1  GAGGTAAGAGCTACACTTATCAGTGAGTGTGAAGATAAGTATTCAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAGAGCTACACTTATCAGTGAGTGTGAAGATAAGTATTCAGGATG  650

seq1  TGGTTAGAAATTACACTAGTTTAATAAAGTGGCAGTAGTAGGGGCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAAATTACACTAGTTTAATAAAGTGGCAGTAGTAGGGGCTCTTT  700

seq1  TAGGGTCCATGACCTCACCAGCTGTGGGTGGTTGCCTGGGTTTACAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCCATGACCTCACCAGCTGTGGGTGGTTGCCTGGGTTTACAGCAC  750

seq1  CAGGCATAAATTCTCTCCTGTTGAGAAGACCTTGACTCCAATTAAACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAAATTCTCTCCTGTTGAGAAGACCTTGACTCCAATTAAACAGC  800

seq1  TCTTGGCTATCCCCACAATATGTGTGCCACTACTGCACCCTGGTATATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTATCCCCACAATATGTGTGCCACTACTGCACCCTGGTATATAC  850

seq1  TGCACCCTGGCATATACTGCACCCTGGTAT-ATACTGTACCCTGGTATAT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCACCCTGGCATATACTGCACCCTGGTATAATACTGTACCCTGGTATAT  900

seq1  ACTGCACCCTGGTATATACTATACCCTGGTAT-ATACTGCTCTCTGGTAT  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGCACCCTGGTATATACTATACCCTGGTATAATACTGCTCTCTGGTAT  950

seq1  ATGCTGCACCCTGGTATATACTGTACCCCGGTAT-ATACTGCTCT-CTCG  996
      ||||||||||||||||||||||||| |||||||| |||||||||| ||||
seq2  ATGCTGCACCCTGGTATATACTGTA-CCCGGTATAATACTGCTCTCCTCG  999

seq1  TATATGCTGCACCCTGGTATACACTGCACCCTGGTATATACTGCACCCTG  1046
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TATATGCTGCACCCTGGTATACACTGCA-CCTGGTATATACTGCACCCT-  1047

seq1  GTATATACTGCTCTCTGGTGTATAT-ACTGCACCCTGGTATATACTGCAC  1095
      ||||||||||||||||||||||||| |||| ||| ||   ||||||||| 
seq2  GTATATACTGCTCTCTGGTGTATATAACTGAACCTTG---TATACTGCA-  1093

seq1  CCTGGTATATGCTGCACCCTGGTATATACTGCACCCCGTATATACTGCAC  1145
      | |  || |||||||||||| ||||||||||||||||| |||||||||| 
seq2  CTTAATA-ATGCTGCACCCT-GTATATACTGCACCCCG-ATATACTGCAA  1140

seq1  CCTGGTATATAC  1157
      ||||| ||||||
seq2  CCTGG-ATATAC  1151