BAC Information

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BAC

Clone NameB6Ng01-288B05
Chromosome8 (Build37)
Map Location 35,521,884 - 35,522,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288B05.bB6Ng01-288B05.g
ACCGA085833GA085834
length1,0351,211
definitionB6Ng01-288B05.b B6Ng01-288B05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtgctacgctactaactgcttatgctcctctcagttgggtg
ttgtggttccgtgttccagaccaggtacagagacagataggaagtggttc
tactcctgccgtcctctgatttctgagattgccagggtttgagctcaatc
agccttagcagttcttatgcctgtctggtagcacagtcccatatgcccta
caggtgaagtctgacagtgggtgggcaaaagaagggaacactttaagaca
gtctgctgtacctggcaggaattcccaggcaggagccaatgagcatgcag
aaacgtcagacacagtcatggacttcacttatgtatgttcaacagtttac
atacatgcaataggtgtgattgcatcctctgcacagatgggttgggtacc
tgaggcacatgagggtacatgtaagctaaatgagacaggggagctcaaag
gagtcaagtggcttgcaaaagtcacacaccaggttaaataagaaaactat
ttcctgacccccttccctgacctcagttctgaggctagctgtgaaattgg
ttgaggtaatttaaaactcagctcgtcctgaccactgggctgtgtgaggg
ggctgatactttctctggctctgagcactgtccggctgcttattgactgt
caggagatgtatgggaatacttagctgcagggaatacttacgacagggac
ctgtgtcacgatcaaacagaaagaatttctctttccttaattgtgtcgta
ggcttgaaggcactgctttgcagcccattctccattccaaggcaccgtcc
ttggctctttagatcccaagtctatatcccaagtacaatgtcattttcta
atataatgccaaagaatggagtcataaggctttgggagtctagaatcctc
acttgaccctcagagctggtacaggtgtcttccctgctgtgccacctcac
ccccagtgcattcataatgcccacagctatggccagctggcctgtccccc
tctagaccttgtttcatgatggggactagtccctt
gaattccattttctatcctcctgtcagcacagaatcatattaccaaccca
atgttctacttacttgacagacaacaaatacatctttatggagtttaaat
gttaagcctctgataacaggttttactttcacctgtttttattagacatt
tcctctgtgttcatatttttaggttgtttctctcagttaatgatttataa
gattgttaacaatatgtattattgattattggtcctttcttacatattta
agaagttatcttcaccaatcagaaggggtctctagaagtctttctaatta
ttcctaaagttttctttctttttacctttagcacatttatatttaatata
gccactacttatttctatttttagtgtgagataaaggtttaacataaaaa
aaaaattgccaaatccacaacagttgctcatatactgctacttacatcca
ttatctctatcctacatgtgatgttgtcagcccttggcatacatggagaa
tagatccaggatgcctataaatgtaattcttggggggtttcttagcctcc
ttaatgcctatataacttcagggcatttctatgcttcccctagccagttt
tagctcctgaatacagagacttggtatatttattaagtctgcaagcttaa
gctgggtaggttctgagctactctggcctgactaggctatttattaccca
gcaacatgtcccattacatgccatctgatctttgccttggctcgctctgt
ccatgtgtgtcctcctgactgttgttctttcattgagacctcatggtaaa
tcctctttagtctttcctatcctcatggtcctctattccccccccccctc
tctgggactcactgattcagatcagaagtcccaccctattctcttcttca
cagctaattggctcatcagctcttttattaaccaatcaggggtgttggaa
gacaacttttgcataacataaagactggcgatgattgaccataccattgt
ctgtactgcaacggccatctgggcatagaattcagcatttgataacacag
tgcctcaaaccatccctcaacaccccagtcattaaccaaattctacaaaa
cacctccatcctttacattaattgctgagagaattgccatataacctatg
ccattcctgcctacacacgcgcaaaaatcatatcctcatgagttggatat
tactacatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_35521884_35522919
seq2: B6Ng01-288B05.b_47_1081

seq1  GAATTCCAGGTGCTACGCTACTAACTGCTTATGCTCCTCTCAGTTGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCTACGCTACTAACTGCTTATGCTCCTCTCAGTTGGGTG  50

seq1  TTGTGGTTCCGTGTTCCAGACCAGGTACAGAGACAGATAGGAAGTGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTCCGTGTTCCAGACCAGGTACAGAGACAGATAGGAAGTGGTTC  100

seq1  TACTCCTGCCGTCCTCTGATTTCTGAGATTGCCAGGGTTTGAGCTCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGCCGTCCTCTGATTTCTGAGATTGCCAGGGTTTGAGCTCAATC  150

seq1  AGCCTTAGCAGTTCTTATGCCTGTCTGGTAGCACAGTCCCATATGCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGCAGTTCTTATGCCTGTCTGGTAGCACAGTCCCATATGCCCTA  200

seq1  CAGGTGAAGTCTGACAGTGGGTGGGCAAAAGAAGGGAACACTTTAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAGTCTGACAGTGGGTGGGCAAAAGAAGGGAACACTTTAAGACA  250

seq1  GTCTGCTGTACCTGGCAGGAATTCCCAGGCAGGAGCCAATGAGCATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGTACCTGGCAGGAATTCCCAGGCAGGAGCCAATGAGCATGCAG  300

seq1  AAACGTCAGACACAGTCATGGACTTCACTTATGTATGTTCAACAGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCAGACACAGTCATGGACTTCACTTATGTATGTTCAACAGTTTAC  350

seq1  ATACATGCAATAGGTGTGATTGCATCCTCTGCACAGATGGGTTGGGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCAATAGGTGTGATTGCATCCTCTGCACAGATGGGTTGGGTACC  400

seq1  TGAGGCACATGAGGGTACATGTAAGCTAAATGAGACAGGGGAGCTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACATGAGGGTACATGTAAGCTAAATGAGACAGGGGAGCTCAAAG  450

seq1  GAGTCAAGTGGCTTGCAAAAGTCACACACCAGGTTAAATAAGAAAACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGTGGCTTGCAAAAGTCACACACCAGGTTAAATAAGAAAACTAT  500

seq1  TTCCTGACCCCCTTCCCTGACCTCAGTTCTGAGGCTAGCTGTGAAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCCCCTTCCCTGACCTCAGTTCTGAGGCTAGCTGTGAAATTGG  550

seq1  TTGAGGTAATTTAAAACTCAGCTCGTCCTGACCACTGGGCTGTGTGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTAATTTAAAACTCAGCTCGTCCTGACCACTGGGCTGTGTGAGGG  600

seq1  GGCTGATACTTTCTCTGGCTCTGAGCACTGTCCGGCTGCTTATTGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATACTTTCTCTGGCTCTGAGCACTGTCCGGCTGCTTATTGACTGT  650

seq1  CAGGAGATGTATGGGAATACTTAGCTGCAGGGAATACTTACGACAGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATGTATGGGAATACTTAGCTGCAGGGAATACTTACGACAGGGAC  700

seq1  CTGTGTCACGATCAAACAGAAAGAATTTCTCTTTCCTTAATTGTGTCGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCACGATCAAACAGAAAGAATTTCTCTTTCCTTAATTGTGTCGTA  750

seq1  GGCTTGAAGGCACTGCTTTGCAGCCCATTCTCCATTCCAAGGCACCGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAAGGCACTGCTTTGCAGCCCATTCTCCATTCCAAGGCACCGTCC  800

seq1  TTGGCTCTTTAGATCCCAAGTCTATATCCCAAGTACAATGTCA-TTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGGCTCTTTAGATCCCAAGTCTATATCCCAAGTACAATGTCATTTTCTA  850

seq1  ATATAATGCCAAAGAATGGAGTCATAAGGCTTT-GGAGTCTAGAATCCTC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATAATGCCAAAGAATGGAGTCATAAGGCTTTGGGAGTCTAGAATCCTC  900

seq1  ACTTGACCCTCAGAGCTGGTACAGGTGTCTTCCCTGCTGTGCCACCTCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTTGACCCTCAGAGCTGGTACAGGTGTCTTCCCTGCTGTGCCACCTCA-  949

seq1  CCCCCAGTGCATTCATAATGCCCACAGCTATGGCCAGCTGGCCTGT-CCC  997
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCCCAGTGCATTCATAATGCCCACAGCTATGGCCAGCTGGCCTGTCCCC  999

seq1  CTCTAGACCTTGTTTTTCATGGATGGGGACTAGTCCCTT  1036
      ||||||||||||  |||||| ||||||||||||||||||
seq2  CTCTAGACCTTG--TTTCAT-GATGGGGACTAGTCCCTT  1035