BAC Information

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BAC

Clone NameB6Ng01-289C15
Chromosome8 (Build37)
Map Location 76,119,411 - 76,211,967
singlet/doubletdoublet
Overlap genenone
Upstream geneNwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
Downstream geneCrry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289C15.bB6Ng01-289C15.g
ACCGA086638GA086639
length933937
definitionB6Ng01-289C15.b B6Ng01-289C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,119,411 - 76,120,343)(76,211,371 - 76,211,967)
sequence
gaattctgtgaatctagatgttccttgatgtaatgattcttaaacaatta
aaatattgaggcatggggcatagcactgcacagttctgatggcccaggta
catgctgtatattcttatcttggaaacaatgcagtaactacacaatggta
gttccagattaatgcttgatttgcaacgaaagtttgaagaaattattaga
aattttgatagaaacaacattgggaccgcaagaaagaaaaaattattaaa
gttatgaaataagtttaggggttcctggataagcaagtataaaatatgta
aaatcttatattagtaaaactaagtcaaaacactgggactcttaggacag
tcattgtgtgcaatgtgcagaagcagaaagctagtgaaattatagagtta
caggttaacttgattctttctggccactgactggcagctttgcccatgtc
atttatcattagagctccacaagaaaatgcaagtagctggcctcagagtt
ctgagctctgacgtataataagttaaagtttaaataatgataagtttgca
attattattattttggctacaggcctgggaatggggaagcttgaaacttt
ggggaacaattgtaatacttgatttcttgtgggacatggttattcttttg
aatttgatttgtcaatgactatacaatgtctttttctacctgcttttaga
gtattagtaaaagactggggcagaccctataggtggaacaacaatatgag
ctaatcagtacccctagagctcgtgtctctacctgcatatgtagcagaag
atggcctagttggccatccctggaaagagaagccccttggtattgcaaac
tttatatgccccagtacaggggaatgccagggccaaaacgtgggagtggg
tgggtaggggagcagggcagggggagggtattg

gaattcttttcatgtatgtataggcttatatcttaagaagccttctgcaa
taacagatcccttaataataagttgctagtgatatgtcacacagtttttt
accaaacatgaacagataataatcctatgaccaagcttcctaattttata
taaatgaaattaaaatatgtagaactaatgaaataaagagctggttcttt
gaaaagactgacaaacttataaaaattaaccaaaatagagaaaagatcca
cattaataaaattaaggattaaaagggagagaaccaaagccagagaatta
taagcacatattttaaaaaaacactatatgggagtgttttgaagaagacc
tggaggagaaaaccattttaataaaatgacaatttcaagaaaaaaaatct
atattccattttactgcaattccttttactgcaatggaaagtgcatcagt
ctcatatagcctgccaaacaggaaaatttaaaggaaatggatgcatttct
atgtgtctatgatcaaacaaagtcaaatcaatagataaataatttaaata
tattcattgtatacaattagatagaagtaatattttaaaatctcccaact
gaaaagagctcagagccagatggattcagcacagaattctgtcagacttt
caaagaacagctaacacaaataagagtactcctcttactattctgtaaaa
tagaaactaatggtaggttttgaaagtcattttacaaccagtattactct
gataccaaaatcaaacaaagactcaacaacagtaacaaataagacaacta
agaatcaaggtctctaagaaacatagaagaaaaaaaaaaatcaccctcac
taaaatactggcaaatcaactttaaaatcacattaaaagattatctacaa
tattgccattgtcccaaagctacaaagatggttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_76119411_76120343
seq2: B6Ng01-289C15.b_44_976

seq1  GAATTCTGTGAATCTAGATGTTCCTTGATGTAATGATTCTTAAACAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAATCTAGATGTTCCTTGATGTAATGATTCTTAAACAATTA  50

seq1  AAATATTGAGGCATGGGGCATAGCACTGCACAGTTCTGATGGCCCAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAGGCATGGGGCATAGCACTGCACAGTTCTGATGGCCCAGGTA  100

seq1  CATGCTGTATATTCTTATCTTGGAAACAATGCAGTAACTACACAATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTATATTCTTATCTTGGAAACAATGCAGTAACTACACAATGGTA  150

seq1  GTTCCAGATTAATGCTTGATTTGCAACGAAAGTTTGAAGAAATTATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGATTAATGCTTGATTTGCAACGAAAGTTTGAAGAAATTATTAGA  200

seq1  AATTTTGATAGAAACAACATTGGGACCGCAAGAAAGAAAAAATTATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATAGAAACAACATTGGGACCGCAAGAAAGAAAAAATTATTAAA  250

seq1  GTTATGAAATAAGTTTAGGGGTTCCTGGATAAGCAAGTATAAAATATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAATAAGTTTAGGGGTTCCTGGATAAGCAAGTATAAAATATGTA  300

seq1  AAATCTTATATTAGTAAAACTAAGTCAAAACACTGGGACTCTTAGGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATATTAGTAAAACTAAGTCAAAACACTGGGACTCTTAGGACAG  350

seq1  TCATTGTGTGCAATGTGCAGAAGCAGAAAGCTAGTGAAATTATAGAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGTGCAATGTGCAGAAGCAGAAAGCTAGTGAAATTATAGAGTTA  400

seq1  CAGGTTAACTTGATTCTTTCTGGCCACTGACTGGCAGCTTTGCCCATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAACTTGATTCTTTCTGGCCACTGACTGGCAGCTTTGCCCATGTC  450

seq1  ATTTATCATTAGAGCTCCACAAGAAAATGCAAGTAGCTGGCCTCAGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATTAGAGCTCCACAAGAAAATGCAAGTAGCTGGCCTCAGAGTT  500

seq1  CTGAGCTCTGACGTATAATAAGTTAAAGTTTAAATAATGATAAGTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTGACGTATAATAAGTTAAAGTTTAAATAATGATAAGTTTGCA  550

seq1  ATTATTATTATTTTGGCTACAGGCCTGGGAATGGGGAAGCTTGAAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTTTGGCTACAGGCCTGGGAATGGGGAAGCTTGAAACTTT  600

seq1  GGGGAACAATTGTAATACTTGATTTCTTGTGGGACATGGTTATTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACAATTGTAATACTTGATTTCTTGTGGGACATGGTTATTCTTTTG  650

seq1  AATTTGATTTGTCAATGACTATACAATGTCTTTTTCTACCTGCTTTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTTGTCAATGACTATACAATGTCTTTTTCTACCTGCTTTTAGA  700

seq1  GTATTAGTAAAAGACTGGGGCAGACCCTATAGGTGGAACAACAATATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTAAAAGACTGGGGCAGACCCTATAGGTGGAACAACAATATGAG  750

seq1  CTAATCAGTACCCCTAGAGCTCGTGTCTCTACCTGCATATGTAGCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAGTACCCCTAGAGCTCGTGTCTCTACCTGCATATGTAGCAGAAG  800

seq1  ATGGCCTAGTTGGCCATCCCTGGAAAGAGAAGCCCCTTGGTATTGCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTTGGCCATCCCTGGAAAGAGAAGCCCCTTGGTATTGCAAAC  850

seq1  TTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAACGTGGGAGTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAACGTGGGAGTGGG  900

seq1  TGGGTAGGGGAGCAGGGCAGGGGGAGGGTATGG  933
      ||||||||||||||||||||||||||||||| |
seq2  TGGGTAGGGGAGCAGGGCAGGGGGAGGGTATTG  933


seq1: chr8_76211371_76211967
seq2: B6Ng01-289C15.g_67_663 (reverse)

seq1  TGGGAGATTTTAAAATATTACTTCTATCTAATTGTATACAATGAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATTTTAAAATATTACTTCTATCTAATTGTATACAATGAATATAT  50

seq1  TTAAATTATTTATCTATTGATTTGACTTTGTTTGATCATAGACACATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTTATCTATTGATTTGACTTTGTTTGATCATAGACACATAGA  100

seq1  AATGCATCCATTTCCTTTAAATTTTCCTGTTTGGCAGGCTATATGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCCATTTCCTTTAAATTTTCCTGTTTGGCAGGCTATATGAGACT  150

seq1  GATGCACTTTCCATTGCAGTAAAAGGAATTGCAGTAAAATGGAATATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTTTCCATTGCAGTAAAAGGAATTGCAGTAAAATGGAATATAGA  200

seq1  TTTTTTTTCTTGAAATTGTCATTTTATTAAAATGGTTTTCTCCTCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTGAAATTGTCATTTTATTAAAATGGTTTTCTCCTCCAGGT  250

seq1  CTTCTTCAAAACACTCCCATATAGTGTTTTTTTAAAATATGTGCTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAAACACTCCCATATAGTGTTTTTTTAAAATATGTGCTTATAA  300

seq1  TTCTCTGGCTTTGGTTCTCTCCCTTTTAATCCTTAATTTTATTAATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCTTTGGTTCTCTCCCTTTTAATCCTTAATTTTATTAATGTGG  350

seq1  ATCTTTTCTCTATTTTGGTTAATTTTTATAAGTTTGTCAGTCTTTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTCTATTTTGGTTAATTTTTATAAGTTTGTCAGTCTTTTCAAA  400

seq1  GAACCAGCTCTTTATTTCATTAGTTCTACATATTTTAATTTCATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCTCTTTATTTCATTAGTTCTACATATTTTAATTTCATTTATAT  450

seq1  AAAATTAGGAAGCTTGGTCATAGGATTATTATCTGTTCATGTTTGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGGAAGCTTGGTCATAGGATTATTATCTGTTCATGTTTGGTAAA  500

seq1  AAACTGTGTGACATATCACTAGCAACTTATTATTAAGGGATCTGTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTGACATATCACTAGCAACTTATTATTAAGGGATCTGTTATTG  550

seq1  CAGAAGGCTTCTTAAGATATAAGCCTATACATACATGAAAAGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTTCTTAAGATATAAGCCTATACATACATGAAAAGAATTC  597


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