BAC Information

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BAC

Clone NameB6Ng01-289J24
Chromosome8 (Build37)
Map Location 102,619,170 - 102,758,722
singlet/doubletdoublet
Overlap geneLOC100042078
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289J24.bB6Ng01-289J24.g
ACCGA086970GA086971
length1,1131,055
definitionB6Ng01-289J24.b B6Ng01-289J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,757,605 - 102,758,722)(102,619,170 - 102,620,222)
sequence
gaattccatttgcaccctcaagcccttcttgtgtgcttttctgaagagtg
gataatggcagtaagctgagaaaaacaattccttgctgagttgttgggga
ttcatagtcttcaacactgcttagcttattagaaagcacactagatgcct
tggctctccaaaactaacatagtgaaagtttaacctaaactaccatttta
tttcaaaaccaaaagagataaatggcaagcagagtataaatgacaaatgg
actacttcaaggactgtctatagagaacaaaactcatttctactcaatat
cttatataaaataatatagtgtttgcatttatctctatgcacatgtcata
tattcaaattttgtatagattattcatattatgtactttgaagtgtatgt
aaaagagtttatcaatttaggggataatgacaacaaacaaacaaacaaac
aaacaaactgtgcatatgtgctatttgccctactagtgtttggttatttt
tttggtacagtatttcctctgtggtcatctttcttgaaatgaaaatgtac
atgtacagcattaagtgtttgaaatatctcatttaattttagatttaata
ttgaagcaatttgagcagaaattagagacagagagtttcaattgtatcca
atccatagtctctgtttttccacccagagatggaataataaacctgatac
ttatttctgaatgaaatataaaacaaaaaagtccaagatataatatgact
cgcaaaatccaagtctctatcttattaatgttttaatattaaacaagatt
tgtaaaatctattctctgtaaacattaggtaatacatacatgcaatgtac
tcaagtaaaatcatacatgataacatttcccaacagagtaagccaattct
aagaatgaatgacattgtggcttcaatgtgttccagcaagatttgaacat
taccattgtggtgggattaagaggtgggcctttagatccgattagtcttt
gacactaatacatcatgaatggcatgagatatttataaaaggagatgcca
caggagtcagtcactttcctccctatttcttgcattagggcaagaatcct
tccttggtagagt

gaattcagtgcttctttttcagagatttatagacttgaagacaaaaaaca
ataaaattgttcagagaaaaagaaagaagaggagaaggaaagatgggaga
aagtggaagagaacgagaattttggaagtatttcagcctcatattattta
atctaaggtatataatttgataaagactaactctaatttttttctattga
cttttccatgaaacgagaagacagtggtttgtgctgggtttggggtaaag
cttagtatttagctaagtattctaggcctttgccagtaataggcacaaaa
gtggggaagaggtcagtaaatcacactacagtgatcatgtaagcaatgta
atgggttcacatctggatgattgcgaagccaagcagcacagacaaaagat
aaataaatacagagcaagtacacaaagacagcagatgatgtgaacactgc
attctttccaaagtagtgtcctccatgaacaaaggaagcataagttttta
cttaggaagtttataaattctcatataggaaaacagtatggggtaggtac
atttctgcgaatgctctctttgatgagtatgtacaggttatggttcaaag
acagagagaagacatgtttctgggcatgctgagttcaaagtcatggaccc
catgtgcaacagaataaagtggtgcacaggaaccctttctgaacatgctc
agtttctatcataaagatggggaactataattctttcttttctagatgag
taaacccgccttgattcttggagatgaagaattgtcaactaatcacaaca
ctatcagttatttaggacattttgtaaaagttgtgtaaccatgaactgca
atttttcctttcccctctgagagcaaaatgcttttttagacagtttcata
ttccatctcctcctgatatcataaaggaaattatatagttgtcattggga
acccaagagtcaaagtgatatctctaaataatagctataaccaagatata
ggcaaggatgcagggacaaaaaagtggaaaaagggagtgaggggggaaag
ggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102757605_102758722
seq2: B6Ng01-289J24.b_45_1157 (reverse)

seq1  ACTCTACAAAGAAGGGATTCTTCCCCTAAATGCAAGAAATAGGGAGGGAA  50
      ||||||| ||| | |||||||| |||| ||||||||||||||||| ||||
seq2  ACTCTACCAAGGAAGGATTCTTGCCCT-AATGCAAGAAATAGGGA-GGAA  48

seq1  AGTGACTTGACTCCTGTGGCATCTCCTTTTATAAATATCTTCATGCCATT  100
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTGAC-TGACTCCTGTGGCATCTCCTTTTATAAATATC-TCATGCCATT  96

seq1  CATGATGTATTAGTTGTCAAAGACTAATCGGATCTAAAGGCCCACCTCTT  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATGATGTATTAG-TGTCAAAGACTAATCGGATCTAAAGGCCCACCTCTT  145

seq1  AATCCCACCACAATGGTAATGTTCAAATCTTGCTGGAACACATTGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACCACAATGGTAATGTTCAAATCTTGCTGGAACACATTGAAGCC  195

seq1  ACAATGTCATTCATTCTTAGAATTGGCTTACTCTGTTGGGAAATGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCATTCATTCTTAGAATTGGCTTACTCTGTTGGGAAATGTTATC  245

seq1  ATGTATGATTTTACTTGAGTACATTGCATGTATGTATTACCTAATGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGATTTTACTTGAGTACATTGCATGTATGTATTACCTAATGTTTA  295

seq1  CAGAGAATAGATTTTACAAATCTTGTTTAATATTAAAACATTAATAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATAGATTTTACAAATCTTGTTTAATATTAAAACATTAATAAGAT  345

seq1  AGAGACTTGGATTTTGCGAGTCATATTATATCTTGGACTTTTTTGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTGGATTTTGCGAGTCATATTATATCTTGGACTTTTTTGTTTTA  395

seq1  TATTTCATTCAGAAATAAGTATCAGGTTTATTATTCCATCTCTGGGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTCAGAAATAAGTATCAGGTTTATTATTCCATCTCTGGGTGGA  445

seq1  AAAACAGAGACTATGGATTGGATACAATTGAAACTCTCTGTCTCTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGACTATGGATTGGATACAATTGAAACTCTCTGTCTCTAATTT  495

seq1  CTGCTCAAATTGCTTCAATATTAAATCTAAAATTAAATGAGATATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAAATTGCTTCAATATTAAATCTAAAATTAAATGAGATATTTCAA  545

seq1  ACACTTAATGCTGTACATGTACATTTTCATTTCAAGAAAGATGACCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAATGCTGTACATGTACATTTTCATTTCAAGAAAGATGACCACAG  595

seq1  AGGAAATACTGTACCAAAAAAATAACCAAACACTAGTAGGGCAAATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATACTGTACCAAAAAAATAACCAAACACTAGTAGGGCAAATAGCA  645

seq1  CATATGCACAGTTTGTTTGTTTGTTTGTTTGTTTGTTGTCATTATCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACAGTTTGTTTGTTTGTTTGTTTGTTTGTTGTCATTATCCCCT  695

seq1  AAATTGATAAACTCTTTTACATACACTTCAAAGTACATAATATGAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATAAACTCTTTTACATACACTTCAAAGTACATAATATGAATAAT  745

seq1  CTATACAAAATTTGAATATATGACATGTGCATAGAGATAAATGCAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAAATTTGAATATATGACATGTGCATAGAGATAAATGCAAACAC  795

seq1  TATATTATTTTATATAAGATATTGAGTAGAAATGAGTTTTGTTCTCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATTTTATATAAGATATTGAGTAGAAATGAGTTTTGTTCTCTATA  845

seq1  GACAGTCCTTGAAGTAGTCCATTTGTCATTTATACTCTGCTTGCCATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCTTGAAGTAGTCCATTTGTCATTTATACTCTGCTTGCCATTTA  895

seq1  TCTCTTTTGGTTTTGAAATAAAATGGTAGTTTAGGTTAAACTTTCACTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGGTTTTGAAATAAAATGGTAGTTTAGGTTAAACTTTCACTAT  945

seq1  GTTAGTTTTGGAGAGCCAAGGCATCTAGTGTGCTTTCTAATAAGCTAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTGGAGAGCCAAGGCATCTAGTGTGCTTTCTAATAAGCTAAGC  995

seq1  AGTGTTGAAGACTATGAATCCCCAACAACTCAGCAAGGAATTGTTTTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAAGACTATGAATCCCCAACAACTCAGCAAGGAATTGTTTTTCT  1045

seq1  CAGCTTACTGCCATTATCCACTCTTCAGAAAAGCACACAAGAAGGGCTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTACTGCCATTATCCACTCTTCAGAAAAGCACACAAGAAGGGCTTG  1095

seq1  AGGGTGCAAATGGAATTC  1118
      ||||||||||||||||||
seq2  AGGGTGCAAATGGAATTC  1113


seq1: chr8_102619170_102620222
seq2: B6Ng01-289J24.g_69_1123

seq1  GAATTCAGTGCTTCTTTTTCAGAGATTTATAGACTTGAAGACAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTTCTTTTTCAGAGATTTATAGACTTGAAGACAAAAAACA  50

seq1  ATAAAATTGTTCAGAGAAAAAGAAAGAAGAGGAGAAGGAAAGATGGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGTTCAGAGAAAAAGAAAGAAGAGGAGAAGGAAAGATGGGAGA  100

seq1  AAGTGGAAGAGAACGAGAATTTTGGAAGTATTTCAGCCTCATATTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGAGAACGAGAATTTTGGAAGTATTTCAGCCTCATATTATTTA  150

seq1  ATCTAAGGTATATAATTTGATAAAGACTAACTCTAATTTTTTTCTATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGGTATATAATTTGATAAAGACTAACTCTAATTTTTTTCTATTGA  200

seq1  CTTTTCCATGAAACGAGAAGACAGTGGTTTGTGCTGGGTTTGGGGTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATGAAACGAGAAGACAGTGGTTTGTGCTGGGTTTGGGGTAAAG  250

seq1  CTTAGTATTTAGCTAAGTATTCTAGGCCTTTGCCAGTAATAGGCACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTTAGCTAAGTATTCTAGGCCTTTGCCAGTAATAGGCACAAAA  300

seq1  GTGGGGAAGAGGTCAGTAAATCACACTACAGTGATCATGTAAGCAATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAGAGGTCAGTAAATCACACTACAGTGATCATGTAAGCAATGTA  350

seq1  ATGGGTTCACATCTGGATGATTGCGAAGCCAAGCAGCACAGACAAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCACATCTGGATGATTGCGAAGCCAAGCAGCACAGACAAAAGAT  400

seq1  AAATAAATACAGAGCAAGTACACAAAGACAGCAGATGATGTGAACACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATACAGAGCAAGTACACAAAGACAGCAGATGATGTGAACACTGC  450

seq1  ATTCTTTCCAAAGTAGTGTCCTCCATGAACAAAGGAAGCATAAGTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCAAAGTAGTGTCCTCCATGAACAAAGGAAGCATAAGTTTTTA  500

seq1  CTTAGGAAGTTTATAAATTCTCATATAGGAAAACAGTATGGGGTAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAAGTTTATAAATTCTCATATAGGAAAACAGTATGGGGTAGGTAC  550

seq1  ATTTCTGCGAATGCTCTCTTTGATGAGTATGTACAGGTTATGGTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCGAATGCTCTCTTTGATGAGTATGTACAGGTTATGGTTCAAAG  600

seq1  ACAGAGAGAAGACATGTTTCTGGGCATGCTGAGTTCAAAGTCATGGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAAGACATGTTTCTGGGCATGCTGAGTTCAAAGTCATGGACCC  650

seq1  CATGTGCAACAGAATAAAGTGGTGCACAGGAACCCTTTCTGAACATGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAACAGAATAAAGTGGTGCACAGGAACCCTTTCTGAACATGCTC  700

seq1  AGTTTCTATCATAAAGATGGGGAACTATAATTCTTTCTTTTCTAGATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATCATAAAGATGGGGAACTATAATTCTTTCTTTTCTAGATGAG  750

seq1  TAAACCCGCCTTGATTCTTGGAGATGAAGAATTGTCAACTAATCACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCGCCTTGATTCTTGGAGATGAAGAATTGTCAACTAATCACAACA  800

seq1  CTATCAGTTATTTAGGACATTTTGTAAAAGTTGTGTAACCATGAACTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTATTTAGGACATTTTGTAAAAGTTGTGTAACCATGAACTGCA  850

seq1  ATTTTTCCTTTCCCCTCTGAGAGCAAAATGCTTTTTTAGACAGTTTCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTTTCCCCTCTGAGAGCAAAATGCTTTTTTAGACAGTTTCATA  900

seq1  TTCCATCTCCTCCTGATATCAT-AAGGAAATTATAATAGTTGTCATTGGG  949
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TTCCATCTCCTCCTGATATCATAAAGGAAATTAT-ATAGTTGTCATTGGG  949

seq1  AA-CCAAGAGTCAAAGTGATATCTCCTAAAT-ATAGCTATAACCAAGATA  997
      || ||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  AACCCAAGAGTCAAAGTGATATCT-CTAAATAATAGCTATAACCAAGATA  998

seq1  TAGGCAAAGGATGCAGGGGACAAAAAGTGGAAAAAGGGAGTGAGGGGG--  1045
      ||||| ||||||||||||   |||||||||||||||||||||||||||  
seq2  TAGGC-AAGGATGCAGGGACAAAAAAGTGGAAAAAGGGAGTGAGGGGGGA  1047

seq1  AAGGGATG  1053
      ||||||||
seq2  AAGGGATG  1055


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