BAC Information

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BAC

Clone NameB6Ng01-289P14
Chromosome8 (Build37)
Map Location 90,774,963 - 90,965,705
singlet/doubletdoublet
Overlap genePapd5, Adcy7, Brd7, LOC100040369
Upstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3
Downstream geneNkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289P14.bB6Ng01-289P14.g
ACCGA087231GA087232
length1,1471,093
definitionB6Ng01-289P14.b B6Ng01-289P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,774,963 - 90,776,093)(90,964,622 - 90,965,705)
sequence
gaattcactgtggggtgggtttgcagccatctctcctcctgtgggctgcc
atttccagctagttgtcagcagggctttagtgaggtaagatgggggctgg
agagatggctcagccgttaagagcactgaatgctcttccaggggtcctga
gttcaatacccagcaaccacgtggtggctcacaaccatctgtaatgggat
ctgatgccctcttctggtgtgtctgaagacagtggcagtgggcagtgtac
tcacatacataaaataagtaaatctttaaaaaaaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaa
aagaaaagaaaagaaagaaaggaggaaaggtggaagtcctcagacagcag
ggagcatgggcagaaaagctccaggagaccgctcttactcatgttctgac
tgctgctttctttttgtgtgccctctctgtatggctctagctttgggagt
ggcttgagagtgaacggagtgcaagtttctgcctcactttcacaacgtta
aatgtatttgcttatgatgtgcagatgtatgttcatagctaattcagaca
aagaccaggcagcacccttccttccttactgttttcaatgtagcttggct
ttattccgaggagaaaatagccagctgtttgtttgtatgtgataggagaa
tccttgctgggctaaagttgtatgcaggcagtgggtgggtgtaccatagc
aaagcactgtgcaggtcttccaaggctgacagcccactcatgagcagctg
tcacccttgttcctgggcaagggctcatcagcctttattcataataacca
gcagccaggtttacttgtcttcgtatccattttcttttaaaggtaatgat
gttggaaggagttcctatgggggccatgcaggtgaaacaggcctttgatt
tatgcctatggtggtattgagtcatgcaagttgtcaccgattgcaaaggt
actattccctatcaatgaaacaagagagggtaaaagtcttagcccaggcc
agctgttggtgttgaggagtgggttggttacttcttatctttcaacctta
atgtacacctctttgttttttttaacctggtgcagcaattagctaga
gaattcagaagagtgaaaaggagacagagttttttcgggaagcatggatg
gccaacatgtgtgagaccccagtgtgggggcggggaaagagcacagtggg
ctcctggggtttaatcccctcccccccccccagtgactggtttgggtacc
caggtgggggtggggcaataaccactctccaagcaaagaggcagaaaagc
caacacacattggttgatgtctactcctagggatgttggctcccctccgt
tttttgctgctgaagcaagcacccaggaggatcgacaggcattatcctgg
aggctctgggtcagcctgggcaaaagcagcacagggaagttgtagcagag
cccaggctagctcaccagcccaccctaaagccagggcaaagggaagcttc
ctttgcgagcaggagctgctatgctcccacatcaactccatcactgatct
cagagagaaggctttccctgtctgcaccagggctcacaccctgctttgcc
caccttggctgcccttctcctctctgacctctgcttctatggagaaagaa
caccacacacacacacacacacacacacacacacacacacacaccccacc
acaaaataatccaggctccttctatcatgaaagagaacagccatttccca
cctctccccccaccccgctgacctgttccagactcgagcaaggctcagaa
cctggctacttccttgctggtttgatgaacaaaatcctactagagggggt
agggcatgggggctctctggcatcctgcagtgcccccctaggcaccatta
ctgtagacagggggaagatagggagggagctcttcttctgatctcagtag
gaagagaggtctccagtttgggggaacttacagagcatggattggcagaa
ccccaagaccaccttgcagccagggattcttaagaaaaaaaccaatcggg
atggaataaaaatacttgccaggacaaatctccgaaattttctgggacga
cctggggttggtgggaggcacacagggattcaactggccaagatgggtac
agacttgcttccagaacactgtagattcgtctgccgtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_90774963_90776093
seq2: B6Ng01-289P14.b_48_1194

seq1  GAATTCACTGTGGGGTGGGTTTGCAGCCATCTCTCCTCCTGTGGGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGGGGTGGGTTTGCAGCCATCTCTCCTCCTGTGGGCTGCC  50

seq1  ATTTCCAGCTAGTTGTCAGCAGGGCTTTAGTGAGGTAAGATGGGGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCTAGTTGTCAGCAGGGCTTTAGTGAGGTAAGATGGGGGCTGG  100

seq1  AGAGATGGCTCAGCCGTTAAGAGCACTGAATGCTCTTCCAGGGGTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGCCGTTAAGAGCACTGAATGCTCTTCCAGGGGTCCTGA  150

seq1  GTTCAATACCCAGCAACCACGTGGTGGCTCACAACCATCTGTAATGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATACCCAGCAACCACGTGGTGGCTCACAACCATCTGTAATGGGAT  200

seq1  CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGGCAGTGGGCAGTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGGCAGTGGGCAGTGTAC  250

seq1  TCACATACATAAAATAAGTAAATCTTTAAAAAAAAAGAAAGAAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACATAAAATAAGTAAATCTTTAAAAAAAAAGAAAGAAAGAAAGA  300

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAA  350

seq1  AAGAAAAGAAAAGAAAGAAAGGAGGAAAGGTGGAAGTCCTCAGACAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAGAAAGGAGGAAAGGTGGAAGTCCTCAGACAGCAG  400

seq1  GGAGCATGGGCAGAAAAGCTCCAGGAGACCGCTCTTACTCATGTTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGGCAGAAAAGCTCCAGGAGACCGCTCTTACTCATGTTCTGAC  450

seq1  TGCTGCTTTCTTTTTGTGTGCCCTCTCTGTATGGCTCTAGCTTTGGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTTCTTTTTGTGTGCCCTCTCTGTATGGCTCTAGCTTTGGGAGT  500

seq1  GGCTTGAGAGTGAACGGAGTGCAAGTTTCTGCCTCACTTTCACAACGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGAGTGAACGGAGTGCAAGTTTCTGCCTCACTTTCACAACGTTA  550

seq1  AATGTATTTGCTTATGATGTGCAGATGTATGTTCATAGCTAATTCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTGCTTATGATGTGCAGATGTATGTTCATAGCTAATTCAGACA  600

seq1  AAGACCAGGCAGCACCCTTCCTTCCTTACTGTTTTCAATGTAGCTTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGCAGCACCCTTCCTTCCTTACTGTTTTCAATGTAGCTTGGCT  650

seq1  TTATTCCGAGGAGAAAATAGCCAGCTGTTTGTTTGTATGTGATAGGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCGAGGAGAAAATAGCCAGCTGTTTGTTTGTATGTGATAGGAGAA  700

seq1  TCCTTGCTGGGCTAAAGTTGTATGCAGGCAGTGGGTGGGTGTACCATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTGGGCTAAAGTTGTATGCAGGCAGTGGGTGGGTGTACCATAGC  750

seq1  AAAGCACTGTGCAGGTCTTCCAAGGCTGACAGCCCACTCATGAGCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTGTGCAGGTCTTCCAAGGCTGACAGCCCACTCATGAGCAGCTG  800

seq1  TCACCCTTGTTCCTGGGCAAGGGCTCATCAGCCTTTATTCATAATAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGTTCCTGGGCAAGGGCTCATCAGCCTTTATTCATAATAACCA  850

seq1  GCAGCCAGGTTTACTTGTCTTCGTATCCA-TTTCTTTTAAAGGTAATGAT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAGCCAGGTTTACTTGTCTTCGTATCCATTTTCTTTTAAAGGTAATGAT  900

seq1  GTTGGAAGGAGTTCCTAT-GGGGCCATGCAGGTGAAACAGGCCTTTGA-T  947
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  GTTGGAAGGAGTTCCTATGGGGGCCATGCAGGTGAAACAGGCCTTTGATT  950

seq1  TATGCCTAT-GTGGTATTGAGTCATGCA--GTGTCACCGATTGCAAA-GT  993
      ||||||||| ||||||||||||||||||   |||||||||||||||| ||
seq2  TATGCCTATGGTGGTATTGAGTCATGCAAGTTGTCACCGATTGCAAAGGT  1000

seq1  ACTAT--CCCAACAATGAAAC-AGAGA-GGTAAAAGTC-TAGCCCAGGCC  1038
      |||||  || | ||||||||| ||||| |||||||||| |||||||||||
seq2  ACTATTCCCTATCAATGAAACAAGAGAGGGTAAAAGTCTTAGCCCAGGCC  1050

seq1  AGCCTGT--GTGTTGA-GAGT-GGTTGG-TACTTCTTATC-TTCAA-CTT  1081
      || ||||  ||||||| |||| |||||| ||||||||||| ||||| |||
seq2  AG-CTGTTGGTGTTGAGGAGTGGGTTGGTTACTTCTTATCTTTCAACCTT  1099

seq1  AATGTACACCTCTTTTGTTTTTTTTTAACCT-GTGCAGCATATTAGGTAG  1130
      |||||||||||||||   ||||||||||||| |||||||| ||||| |||
seq2  AATGTACACCTCTTT--GTTTTTTTTAACCTGGTGCAGCA-ATTAGCTAG  1146

seq1  A  1131
      |
seq2  A  1147

seq1: chr8_90964622_90965705
seq2: B6Ng01-289P14.g_70_1162 (reverse)

seq1  CCCCACACGGCAGACGGATTCTACAGTGTCTTGGAGCAAAGTCCTGTACC  50
      ||||||||||||||| || ||||||||||  ||||   |||| |||||  
seq2  CCCCACACGGCAGAC-GAATCTACAGTGTTCTGGAAGCAAGT-CTGTA--  46

seq1  CCCTTCTT-GCCAG-TGAAT-CCTGTGTGCCTCC--ACAACCCAGGGTCC  95
      ||| |||| ||||| ||||| |||||||||||||   ||||||  |||| 
seq2  CCCATCTTGGCCAGTTGAATCCCTGTGTGCCTCCCACCAACCCCAGGTCG  96

seq1  TTCCAGAAA--TTCGG-GGTTTGT-CTGGCAAGTA-TTTTATT-CAT-CC  138
      | |||||||  ||||| | ||||| |||||||||| ||||||| ||| ||
seq2  TCCCAGAAAATTTCGGAGATTTGTCCTGGCAAGTATTTTTATTCCATCCC  146

seq1  GATTGGGTTTTTTTCTAAGAAT-CCTGGCTGCAAGGTGGTCTTGGGGTTC  187
      |||||| ||||||  ||||||| |||||||||||||||||||||||||||
seq2  GATTGGTTTTTTTCTTAAGAATCCCTGGCTGCAAGGTGGTCTTGGGGTTC  196

seq1  TGCCAATCCATGCTCTGTAAGTT-CCCCAAACTGGAGACCTCTCTTCCTA  236
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCCAATCCATGCTCTGTAAGTTCCCCCAAACTGGAGACCTCTCTTCCTA  246

seq1  CTGAAGATCAGAAGAAGAGCTCCCTCCCTATCTT-CCCCTGTCTACAGTA  285
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTG-AGATCAGAAGAAGAGCTCCCTCCCTATCTTCCCCCTGTCTACAGTA  295

seq1  ATGGTGCCTAGGGGGGCACTGCAGGATGCCAGAGAGCCCCCATGCCCTAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCTAGGGGGGCACTGCAGGATGCCAGAGAGCCCCCATGCCCTAC  345

seq1  CCCCTCTAGTAGGATTTTGTTCATCAAACCAGCAAGGAAGTAGCCAGGTT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTAGTAGGATTTTGTTCATCAAACCAGCAAGGAAGTAGCCAGGTT  395

seq1  CTGAGCCTTGCTCGAGTCTGGAACAGGTCAGCGGGGTGGGGGGAGAGGTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTTGCTCGAGTCTGGAACAGGTCAGCGGGGTGGGGGGAGAGGTG  445

seq1  GGAAATGGCTGTTCTCTTTCATGATAGAAGGAGCCTGGATTATTTTGTGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGCTGTTCTCTTTCATGATAGAAGGAGCCTGGATTATTTTGTGG  495

seq1  TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTT  545

seq1  CTTTCTCCATAGAAGCAGAGGTCAGAGAGGAGAAGGGCAGCCAAGGTGGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATAGAAGCAGAGGTCAGAGAGGAGAAGGGCAGCCAAGGTGGG  595

seq1  CAAAGCAGGGTGTGAGCCCTGGTGCAGACAGGGAAAGCCTTCTCTCTGAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGGGTGTGAGCCCTGGTGCAGACAGGGAAAGCCTTCTCTCTGAG  645

seq1  ATCAGTGATGGAGTTGATGTGGGAGCATAGCAGCTCCTGCTCGCAAAGGA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGATGGAGTTGATGTGGGAGCATAGCAGCTCCTGCTCGCAAAGGA  695

seq1  AGCTTCCCTTTGCCCTGGCTTTAGGGTGGGCTGGTGAGCTAGCCTGGGCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCTTTGCCCTGGCTTTAGGGTGGGCTGGTGAGCTAGCCTGGGCT  745

seq1  CTGCTACAACTTCCCTGTGCTGCTTTTGCCCAGGCTGACCCAGAGCCTCC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACAACTTCCCTGTGCTGCTTTTGCCCAGGCTGACCCAGAGCCTCC  795

seq1  AGGATAATGCCTGTCGATCCTCCTGGGTGCTTGCTTCAGCAGCAAAAAAC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATGCCTGTCGATCCTCCTGGGTGCTTGCTTCAGCAGCAAAAAAC  845

seq1  GGAGGGGAGCCAACATCCCTAGGAGTAGACATCAACCAATGTGTGTTGGC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAGCCAACATCCCTAGGAGTAGACATCAACCAATGTGTGTTGGC  895

seq1  TTTTCTGCCTCTTTGCTTGGAGAGTGGTTATTGCCCCACCCCCACCTGGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCTCTTTGCTTGGAGAGTGGTTATTGCCCCACCCCCACCTGGG  945

seq1  TACCCAAACCAGTCACTGGGGGGGGGGGGAGGGGATTAAACCCCAGGAGC  985
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACCCAAACCAGTCACT-GGGGGGGGGGGAGGGGATTAAACCCCAGGAGC  994

seq1  CCACTGTGCTCTTTCCCCGCCCCCACACTGGGGTCTCACACATGTTGGCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGCTCTTTCCCCGCCCCCACACTGGGGTCTCACACATGTTGGCC  1044

seq1  ATCCATGCTTCCCGAAAAAACTCTGTCTCCTTTTCACTCTTCTGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCTTCCCGAAAAAACTCTGTCTCCTTTTCACTCTTCTGAATTC  1093