BAC Information

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BAC

Clone NameB6Ng01-290P06
Chromosome8 (Build37)
Map Location 101,892,988 - 102,049,348
singlet/doubletdoublet
Overlap geneCdh8, A330008L17Rik
Upstream genenone
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290P06.bB6Ng01-290P06.g
ACCGA087965GA087966
length1,1281,109
definitionB6Ng01-290P06.b B6Ng01-290P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,892,988 - 101,894,119)(102,048,233 - 102,049,348)
sequence
gaattcccaagattccatgttattctgtgatttaccatatcttcagttct
ctgaagtcaagtggagcttctaggcatgaggagaaacacatacacatcca
gaaataagaccagagcccagggctcaaactcaaatctttcagaacattct
cttcagttgtctatttaggtatcaaaagcctgggtcttgcagccttggat
gtgtaacatgtgcaaaccaccatcgatagttcccgtgactgataatgaaa
gcgatgaaataaattaactgtactgaattgcattagagcactgagaatga
gaacacatgtttgcatctattctttcctttgtattcctgtgcagccaaat
aagcactctataaacattaattaagcccttctcataatccattgtgattg
tgcacagtatacaattacatttgctgtctgtgtcaaaagtaaagatccta
aatgccacagggcctttgcaaggttatgaattacatcacttggagaaacc
agaacataggtgtctaccttaactctcttaagcatcaggaagcattacat
ctaattgggcttcagtgggacacccaaacttgtataaaaataggttcaat
caccgtacctccagatttacaagatctttgactaggaacactggatagca
gtgtataaaatcaagcagattgaattagaagattcatggataagtactgt
ttctctcatgaagaaacaaaggtgattaacccaatgcctggcagaaagct
ctaagaatcatctagacttaccagataaaggatataccataccaagaaaa
ggactgatgaactagattttatatatttgttactaacatttattttatac
agcaattaaccttttacaagcaatatcctttaggaagccctggggtattt
taattcactctcccattgaaatctgtataatgagaaagcatttcaattat
tcagataagaaaatctgcatgagtctgggtccaaagtagcccaaatatta
gttgaataatttacaatgaccatttgacttctctcacttgacaccatatc
ttcactaacacactcacaaataaaccatatatgtgtattctagtcatctg
gtgagtgtgggattctatccattttgga

gaattctattgtgataatggattcagttttttcatgtagggtcattcaaa
gaaactaagcaaactataagaactaagtttggtcagctattgtacaatct
tcagcatagaattgcagtgcccttctaaaatacgtaaaatgaatcttaaa
tctccccagtttttcatctgaagaaactttccagaactgggccactgact
aggaacctcagaaatactcagaatcatggttgtctcatcagagctacaac
aggctcatgcaaattctttatcctcactactggaaagatgaggctattgg
tcccttgaatccaaagacaagaggtcctttgagtctgtaatacaagggga
tgaagtgtatagaaaataattctgtgaacttggcgaaaggaattctagca
tgaagcttaaaataattcccagagctcccacaaagctgagagtcttctga
gtgttgaccaaccagagtgaaatgactcagtgaacatccaggttatcaag
gaagctggtaaaactatctctagaataataattactgtagagcagcacat
agagttgctagcctgactagcaacacatatgacacctaactgccaatcaa
gaccaaattcaaccttgaaaaacagaacaaaatctagatgatataaaatt
tgttatatgtaattttcactaaaatatattaggcagccaatacaagggat
agttatacaatttatgattatatacccctagtatgtaattattaaattta
atcctgaatttgatgacaatatgtggtgaaacctgagggatgtaattaag
ccatgagaatggaaccctcatgaatgagtttaaagcccaattggactatg
tcaaaactttagactcatatttttctcctatgcttagctataagaactta
gctctcagcaacttagaaggaaaccaacacccaaaccaagcatagtgctt
gtattttcataatgaactttacatatccaaactaataaaagaaacatatt
cattgtggagaatgtctgtgaaattagtcgtagagccaactgagaaaaaa
aaaaagaatatacagccattatcagagttggcgagcctatatcacatgcc
tcccataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101892988_101894119
seq2: B6Ng01-290P06.b_46_1173

seq1  GAATTCCCAAGATTCCATGTTATTCTGTGATTTACCATATCTTCAGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGATTCCATGTTATTCTGTGATTTACCATATCTTCAGTTCT  50

seq1  CTGAAGTCAAGTGGAGCTTCTAGGCATGAGGAGAAACACATACACATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCAAGTGGAGCTTCTAGGCATGAGGAGAAACACATACACATCCA  100

seq1  GAAATAAGACCAGAGCCCAGGGCTCAAACTCAAATCTTTCAGAACATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGACCAGAGCCCAGGGCTCAAACTCAAATCTTTCAGAACATTCT  150

seq1  CTTCAGTTGTCTATTTAGGTATCAAAAGCCTGGGTCTTGCAGCCTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGTCTATTTAGGTATCAAAAGCCTGGGTCTTGCAGCCTTGGAT  200

seq1  GTGTAACATGTGCAAACCACCATCGATAGTTCCCGTGACTGATAATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACATGTGCAAACCACCATCGATAGTTCCCGTGACTGATAATGAAA  250

seq1  GCGATGAAATAAATTAACTGTACTGAATTGCATTAGAGCACTGAGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGAAATAAATTAACTGTACTGAATTGCATTAGAGCACTGAGAATGA  300

seq1  GAACACATGTTTGCATCTATTCTTTCCTTTGTATTCCTGTGCAGCCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATGTTTGCATCTATTCTTTCCTTTGTATTCCTGTGCAGCCAAAT  350

seq1  AAGCACTCTATAAACATTAATTAAGCCCTTCTCATAATCCATTGTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTATAAACATTAATTAAGCCCTTCTCATAATCCATTGTGATTG  400

seq1  TGCACAGTATACAATTACATTTGCTGTCTGTGTCAAAAGTAAAGATCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTATACAATTACATTTGCTGTCTGTGTCAAAAGTAAAGATCCTA  450

seq1  AATGCCACAGGGCCTTTGCAAGGTTATGAATTACATCACTTGGAGAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACAGGGCCTTTGCAAGGTTATGAATTACATCACTTGGAGAAACC  500

seq1  AGAACATAGGTGTCTACCTTAACTCTCTTAAGCATCAGGAAGCATTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAGGTGTCTACCTTAACTCTCTTAAGCATCAGGAAGCATTACAT  550

seq1  CTAATTGGGCTTCAGTGGGACACCCAAACTTGTATAAAAATAGGTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGGCTTCAGTGGGACACCCAAACTTGTATAAAAATAGGTTCAAT  600

seq1  CACCGTACCTCCAGATTTACAAGATCTTTGACTAGGAACACTGGATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTACCTCCAGATTTACAAGATCTTTGACTAGGAACACTGGATAGCA  650

seq1  GTGTATAAAATCAAGCAGATTGAATTAGAAGATTCATGGATAAGTACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAAATCAAGCAGATTGAATTAGAAGATTCATGGATAAGTACTGT  700

seq1  TTCTCTCATGAAGAAACAAAGGTGATTAACCCAATGCCTGGCAGAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCATGAAGAAACAAAGGTGATTAACCCAATGCCTGGCAGAAAGCT  750

seq1  CTAAGAATCATCTAGACTTACCAGATAAAGGATATACCATACCAAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATCATCTAGACTTACCAGATAAAGGATATACCATACCAAGAAAA  800

seq1  GGACTGATGAACTAGATTTTATATATTTGTTACTAACATTTATTTTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGATGAACTAGATTTTATATATTTGTTACTAACATTTATTTTATAC  850

seq1  AGCAATTAACCTTTTACAAGCAATATCCTTTAGGAAGCCCTGGGGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTAACCTTTTACAAGCAATATCCTTTAGGAAGCCCTGGGGTATTT  900

seq1  TAATTCACTCTCCCATTGAAATCTGTATAATGAGAAAGCATTTCAATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACTCTCCCATTGAAATCTGTATAATGAGAAAGCATTTCAATTAT  950

seq1  TCAGATAAGAAAATCTGCATGAGTCT-GGTCCAAAGTAG-CCAAATATTA  998
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TCAGATAAGAAAATCTGCATGAGTCTGGGTCCAAAGTAGCCCAAATATTA  1000

seq1  GTTGAATAATTTACAATGACCATTTGACTTCTCTCCACTTTGACACCCAT  1048
      |||||||||||||||||||||||||||||||||| ||| |||||| ||||
seq2  GTTGAATAATTTACAATGACCATTTGACTTCTCT-CAC-TTGACA-CCAT  1047

seq1  ATCTTCACTAACAACACTCACAAATAAACCATATATGTGTATTCTAAGTC  1098
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  ATCTTCACTAAC-ACACTCACAAATAAACCATATATGTGTATTCT-AGTC  1095

seq1  AATTCT-GTGAGTGTGGGAATCTATTCATTTTGGA  1132
      |  ||| |||||||||||| ||||| |||||||||
seq2  A--TCTGGTGAGTGTGGGATTCTATCCATTTTGGA  1128


seq1: chr8_102048233_102049348
seq2: B6Ng01-290P06.g_70_1178 (reverse)

seq1  TTTATGGGAGCAATGTGAATATTAAGCTCG-CAACTCTGATATTGCCTGT  49
      ||||||||||  ||||| ||| || ||||| ||||||||||| || ||||
seq2  TTTATGGGAGGCATGTG-ATA-TAGGCTCGCCAACTCTGATAATGGCTGT  48

seq1  ATATTCTTTTTTTTTTTCTCAGTTTGGGCTCCTACGACTAATTTTCACAG  99
      ||||||||||||||||||||||||  |||| |||||||||| ||||||||
seq2  ATATTCTTTTTTTTTTTCTCAGTT--GGCT-CTACGACTAA-TTTCACAG  94

seq1  ACATTTCCTCCAACAATGAATATGTTTCTTTTA-TAGTTTGGATATGTAA  148
      |||||  |||| ||||||||||||||||||||| ||||||||||||||||
seq2  ACATT--CTCC-ACAATGAATATGTTTCTTTTATTAGTTTGGATATGTAA  141

seq1  AGTTCATTATGAAAATACAAGCACTATGCTTGGTTTGGGTGTTGGTTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTATGAAAATACAAGCACTATGCTTGGTTTGGGTGTTGGTTTCC  191

seq1  TTCTAAGTTGCTGAGAGCTAAGTTCTTATAGCTAAGCATAGGAGAAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTTGCTGAGAGCTAAGTTCTTATAGCTAAGCATAGGAGAAAAAT  241

seq1  ATGAGTCTAAAGTTTTGACATAGTCCAATTGGGCTTTAAACTCATTCATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTAAAGTTTTGACATAGTCCAATTGGGCTTTAAACTCATTCATG  291

seq1  AGGGTTCCATTCTCATGGCTTAATTACATCCCTCAGGTTTCACCACATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCCATTCTCATGGCTTAATTACATCCCTCAGGTTTCACCACATAT  341

seq1  TGTCATCAAATTCAGGATTAAATTTAATAATTACATACTAGGGGTATATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAAATTCAGGATTAAATTTAATAATTACATACTAGGGGTATATA  391

seq1  ATCATAAATTGTATAACTATCCCTTGTATTGGCTGCCTAATATATTTTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATTGTATAACTATCCCTTGTATTGGCTGCCTAATATATTTTAG  441

seq1  TGAAAATTACATATAACAAATTTTATATCATCTAGATTTTGTTCTGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTACATATAACAAATTTTATATCATCTAGATTTTGTTCTGTTTT  491

seq1  TCAAGGTTGAATTTGGTCTTGATTGGCAGTTAGGTGTCATATGTGTTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTGAATTTGGTCTTGATTGGCAGTTAGGTGTCATATGTGTTGCT  541

seq1  AGTCAGGCTAGCAACTCTATGTGCTGCTCTACAGTAATTATTATTCTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCTAGCAACTCTATGTGCTGCTCTACAGTAATTATTATTCTAGA  591

seq1  GATAGTTTTACCAGCTTCCTTGATAACCTGGATGTTCACTGAGTCATTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTTACCAGCTTCCTTGATAACCTGGATGTTCACTGAGTCATTTC  641

seq1  ACTCTGGTTGGTCAACACTCAGAAGACTCTCAGCTTTGTGGGAGCTCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTTGGTCAACACTCAGAAGACTCTCAGCTTTGTGGGAGCTCTGG  691

seq1  GAATTATTTTAAGCTTCATGCTAGAATTCCTTTCGCCAAGTTCACAGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTTAAGCTTCATGCTAGAATTCCTTTCGCCAAGTTCACAGAAT  741

seq1  TATTTTCTATACACTTCATCCCCTTGTATTACAGACTCAAAGGACCTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATACACTTCATCCCCTTGTATTACAGACTCAAAGGACCTCTT  791

seq1  GTCTTTGGATTCAAGGGACCAATAGCCTCATCTTTCCAGTAGTGAGGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGATTCAAGGGACCAATAGCCTCATCTTTCCAGTAGTGAGGATA  841

seq1  AAGAATTTGCATGAGCCTGTTGTAGCTCTGATGAGACAACCATGATTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGCATGAGCCTGTTGTAGCTCTGATGAGACAACCATGATTCTG  891

seq1  AGTATTTCTGAGGTTCCTAGTCAGTGGCCCAGTTCTGGAAAGTTTCTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCTGAGGTTCCTAGTCAGTGGCCCAGTTCTGGAAAGTTTCTTCA  941

seq1  GATGAAAAACTGGGGAGATTTAAGATTCATTTTACGTATTTTAGAAGGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAACTGGGGAGATTTAAGATTCATTTTACGTATTTTAGAAGGGC  991

seq1  ACTGCAATTCTATGCTGAAGATTGTACAATAGCTGACCAAACTTAGTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATTCTATGCTGAAGATTGTACAATAGCTGACCAAACTTAGTTCT  1041

seq1  TATAGTTTGCTTAGTTTCTTTGAATGACCCTACATGAAAAAACTGAATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTGCTTAGTTTCTTTGAATGACCCTACATGAAAAAACTGAATCC  1091

seq1  ATTATCACAATAGAATTC  1116
      ||||||||||||||||||
seq2  ATTATCACAATAGAATTC  1109


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