BAC Information

Click to search

BAC

Clone NameB6Ng01-291B15
Chromosome8 (Build37)
Map Location 63,623,731 - 63,757,648
singlet/doubletdoublet
Overlap geneSh3rf1
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
Downstream geneEG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291B15.bB6Ng01-291B15.g
ACCGA088079GA088080
length1,1811,229
definitionB6Ng01-291B15.b B6Ng01-291B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,623,731 - 63,624,904)(63,756,461 - 63,757,648)
sequence
gaattcagcacacagttgcacatcttcctggaattcttccgtaagaactt
tcagcatctgcagctgtcttgaactctgcatcactattactcgctattgt
cagctcctcctgctgtagaatgctgaggtttattttttcctatttagctg
taactttgtgcttattaaccaacgtctccccgtctcaccacccacttgcc
ttcccactccccatcggtgtctccaacacttttaacattcttcagcccag
acgtgtgtctaattttgtacaactgtcccttgcaatgagatagtttctat
ctctcattttgaggtattccttgttttagcaagtctttgtattatctaat
gctaggacaaagcactaccatccataaaagcatgctttctcttcatgctt
ttcacgcaaaaaatgtaatgccttttgcatcataaccaaccacttagctt
acaagcactgtggccataatattggtgtctcagttcacttgtctagaatg
tgtgaggccctaggttcaggaatcagtaccgtaaaattaattaaaggacg
ttcttcctggcttctctttccacaatcaaattctctactcttgtgggaaa
gtataaaagtaattgcaaagacaaacatttcaatagtgaagtcagtttga
tagcctagacgactgccaagtgactaatggacagggagcatacagagaga
ggatacgaggtactaaaggacaagtcacatcctgggaaggacaaagcggg
acgtactaggttttgtcatgctgctcagaatgatatgaaattttaaacgg
agtatttactttgggaattttctgtgtaatattttcaggccttggctgac
cataaataactaaaaccagaggacatgaataaaagagagcaatataccat
gtcattattcattagtgagattcaaatgaaaagcacaggtgtcacattta
cattattattcatagtatagcttctttgaagaaatttgttacattttatt
taaacttgcaggagatcagaggcagatgcctcagagtcctgggggaggcc
agggacatcagagacagctcacaggagttgagagccatccctcttcacca
tgtggctcctctagtattcctaggacctcaagtcaataagcctttggaag
ttgcattacccactgaacatccactagcgct
gaattcaagggcaactaaacaggtgaataatgggcccacaaagctcaggt
gtaaagggtgggagagaggcttaggatggggcttgggacagcatcaggga
ctggctaggacaggaatgtgaagttcagaaagatgcacaacctggtgtgg
aggctcatgcctctaatcctaatactctggaggtagaggcaggaggatcg
ctgagagtttgaggttggcttggtctacatagggagttctaggccagcca
gagtcatatggtgagaccctgtctcaaaagccaaagaaaaaaaggaagga
gtaaatttttttgaaagaaggaaaacatgttttctagtgtgactgatcag
agtcgctggatctgttcaatgtccctggatcttccaaaccatcaatcata
cacaaattcttcctcactgaaatcctggccagaaaaggaagtcactgtga
tgcttgctgtccctgggagaacaagcagcaccgaagcccaggccagaacc
aagatccatagaaagcctcggaaatgcttgtgtgggtatgaagaatgaaa
tttacagcgagaaggtggcggtgacgaatgcctctgatcccagaactcag
gaggcagaggcaagtggatctctgtgagtttgaggtcagactagtatgga
ggacaaagttccaggacagccagagctagacacacacacatacacacaca
cacacacacacacacacacacacacacacacacacaaagagagagacaga
gacagagaaaatagttgatttacatacacacatatatgtatatatagctg
cccccagagagaaacaaaaacacacatttctgctataaaccctacttttc
ccttttccctggaataagaaagaaatgcatgattgggatcagccactctt
gccaccccaggaaaattctgcaaaacgggtaccaaaaggaaaagcagcac
cctccccccagtccccagttcagcatttagtttaagaagaaacaactaaa
cagtgcctccgctagccccgggtttggctttgtgaaaaatcattttcctg
caaacatagaagaaatgaacaacggccattagctcctttacacctgtggg
ctaaaaatactgggcctgcctttgtacgcaaagagaaagtggccgcttgc
ctttgaacagaaacagaaatggactgcatcaataaagtaatggaagccaa
gagaagcaaaacctgccaaggtataacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63623731_63624904
seq2: B6Ng01-291B15.b_48_1228

seq1  GAATTCAGCACACAGTTGCACATCTTCCTGGAATTCTTCCGTAAGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACACAGTTGCACATCTTCCTGGAATTCTTCCGTAAGAACTT  50

seq1  TCAGCATCTGCAGCTGTCTTGAACTCTGCATCACTATTACTCGCTATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCTGCAGCTGTCTTGAACTCTGCATCACTATTACTCGCTATTGT  100

seq1  CAGCTCCTCCTGCTGTAGAATGCTGAGGTTTATTTTTTCCTATTTAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCCTGCTGTAGAATGCTGAGGTTTATTTTTTCCTATTTAGCTG  150

seq1  TAACTTTGTGCTTATTAACCAACGTCTCCCCGTCTCACCACCCACTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGTGCTTATTAACCAACGTCTCCCCGTCTCACCACCCACTTGCC  200

seq1  TTCCCACTCCCCATCGGTGTCTCCAACACTTTTAACATTCTTCAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTCCCCATCGGTGTCTCCAACACTTTTAACATTCTTCAGCCCAG  250

seq1  ACGTGTGTCTAATTTTGTACAACTGTCCCTTGCAATGAGATAGTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTCTAATTTTGTACAACTGTCCCTTGCAATGAGATAGTTTCTAT  300

seq1  CTCTCATTTTGAGGTATTCCTTGTTTTAGCAAGTCTTTGTATTATCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTTTGAGGTATTCCTTGTTTTAGCAAGTCTTTGTATTATCTAAT  350

seq1  GCTAGGACAAAGCACTACCATCCATAAAAGCATGCTTTCTCTTCATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACAAAGCACTACCATCCATAAAAGCATGCTTTCTCTTCATGCTT  400

seq1  TTCACGCAAAAAATGTAATGCCTTTTGCATCATAACCAACCACTTAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGCAAAAAATGTAATGCCTTTTGCATCATAACCAACCACTTAGCTT  450

seq1  ACAAGCACTGTGGCCATAATATTGGTGTCTCAGTTCACTTGTCTAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACTGTGGCCATAATATTGGTGTCTCAGTTCACTTGTCTAGAATG  500

seq1  TGTGAGGCCCTAGGTTCAGGAATCAGTACCGTAAAATTAATTAAAGGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCCCTAGGTTCAGGAATCAGTACCGTAAAATTAATTAAAGGACG  550

seq1  TTCTTCCTGGCTTCTCTTTCCACAATCAAATTCTCTACTCTTGTGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGGCTTCTCTTTCCACAATCAAATTCTCTACTCTTGTGGGAAA  600

seq1  GTATAAAAGTAATTGCAAAGACAAACATTTCAATAGTGAAGTCAGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAGTAATTGCAAAGACAAACATTTCAATAGTGAAGTCAGTTTGA  650

seq1  TAGCCTAGACGACTGCCAAGTGACTAATGGACAGGGAGCATACAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGACGACTGCCAAGTGACTAATGGACAGGGAGCATACAGAGAGA  700

seq1  GGATACGAGGTACTAAAGGACAAGTCACATCCTGGGAAGGACAAAGCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACGAGGTACTAAAGGACAAGTCACATCCTGGGAAGGACAAAGCGGG  750

seq1  ACGTACTAGGTTTTGTCATGCTGCTCAGAATGATATGAAATTTTAAACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACTAGGTTTTGTCATGCTGCTCAGAATGATATGAAATTTTAAACGG  800

seq1  AGTATTTACTTTGGGAATTTTCTGTGTAATATTTTCAGGCCTTGGCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACTTTGGGAATTTTCTGTGTAATATTTTCAGGCCTTGGCTGAC  850

seq1  CATAAATAACTAAAACCAGAGGACATGAATAAAAGAGAGCAATATACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAACTAAAACCAGAGGACATGAATAAAAGAGAGCAATATACCAT  900

seq1  GTCATTATTCATTAGTGAGATTCAAATGAAAAGCACA-GTGTCACATTTA  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCATTATTCATTAGTGAGATTCAAATGAAAAGCACAGGTGTCACATTTA  950

seq1  CA-TATTATTCATAGTATAGCTTCTTTGAAGAAATTTGTTACATTTTATT  998
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATTCATAGTATAGCTTCTTTGAAGAAATTTGTTACATTTTATT  1000

seq1  TAAACTTGCA-GAGATCAGAGGCAGATGCCTCAGAGTCCCTGGGGAGGCC  1047
      |||||||||| ||||||||||||||||||||||||||||  |||||||||
seq2  TAAACTTGCAGGAGATCAGAGGCAGATGCCTCAGAGTCCTGGGGGAGGCC  1050

seq1  A-GGACATCAGAGGACAGCTCACAGGAG-TGAGAG-CATCCCTC-TCACC  1093
      | |||||||||| ||||||||||||||| |||||| |||||||| |||||
seq2  AGGGACATCAGA-GACAGCTCACAGGAGTTGAGAGCCATCCCTCTTCACC  1099

seq1  ATGTGGCT-CTCTAGGAATCCTAGGGAACTCAGGTCATTAGGC--TTGG-  1139
      |||||||| |||||| | ||||| ||| |||| |||| || ||  |||| 
seq2  ATGTGGCTCCTCTAGTATTCCTA-GGACCTCAAGTCAATAAGCCTTTGGA  1148

seq1  AGTGCCATTACCCACTGAGCCATCTCACTAGCGCT  1174
      |||  |||||||||||||  |||| ||||||||||
seq2  AGTTGCATTACCCACTGA-ACATC-CACTAGCGCT  1181

seq1: chr8_63756461_63757648
seq2: B6Ng01-291B15.g_68_1296 (reverse)

seq1  ATGTT-TACCTT-GCAGGTTTTGC-TCTCTGTGCTT-CATTACGTTAATT  46
      ||||| |||||| ||||||||||| |||||  |||| |||||| || |||
seq2  ATGTTATACCTTGGCAGGTTTTGCTTCTCTTGGCTTCCATTAC-TTTATT  49

seq1  AATGCACT-CATTTCTGTTTCTG-TCAAA-GCCAGC-GCCACTT--CCTT  90
       ||||| | |||||||||||||| ||||| || ||| |||||||   |||
seq2  GATGCAGTCCATTTCTGTTTCTGTTCAAAGGCAAGCGGCCACTTTCTCTT  99

seq1  TGCGTACAAAGGCA-GCCCAGTA-TTTTAG-CCACA-GTGTAAA-GAGCT  135
      |||||||||||||| |||||||| |||||| ||||| ||||||| |||||
seq2  TGCGTACAAAGGCAGGCCCAGTATTTTTAGCCCACAGGTGTAAAGGAGCT  149

seq1  AAT-GCCCTTG-TCATTTC-TCTATGTTTGCAG--AAATGATTTTTCAC-  179
      ||| ||| ||| ||||||| |||||||||||||  |||||||||||||| 
seq2  AATGGCCGTTGTTCATTTCTTCTATGTTTGCAGGAAAATGATTTTTCACA  199

seq1  AAGCCAAACC--GGGCTAGCG--AGCACTG-TTAGTTGTCTCTTCTT-AA  223
      ||||||||||  |||||||||   |||||| |||||||| ||||||| ||
seq2  AAGCCAAACCCGGGGCTAGCGGAGGCACTGTTTAGTTGTTTCTTCTTAAA  249

seq1  CT-AATGCTG-ACT-GGGACTGGGGG--AGGTGCTGCTTT--CCTTTGGT  266
      || ||||||| ||| |||||||||||   |||||||||||  | ||||||
seq2  CTAAATGCTGAACTGGGGACTGGGGGGAGGGTGCTGCTTTTCCTTTTGGT  299

seq1  ACCCGTTCTGCAGAA-TTTCCTGGGGTGGCAAGAGTGGCTGAT-CCAATC  314
      ||||||| ||||||| ||||||||||||||||||||||||||| ||||||
seq2  ACCCGTTTTGCAGAATTTTCCTGGGGTGGCAAGAGTGGCTGATCCCAATC  349

seq1  ATGCATTTC-TTCTTA-TCCAGGGAAAAGGGAAAAGTA-GGTTTATAGCA  361
      ||||||||| |||||| ||||||||||||||||||||| |||||||||||
seq2  ATGCATTTCTTTCTTATTCCAGGGAAAAGGGAAAAGTAGGGTTTATAGCA  399

seq1  G-AATGTGTG-TTTTGTTTCTCTCTGGGGGCAGCTATATATACATATATG  409
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTGTTTTTGTTTCTCTCTGGGGGCAGCTATATATACATATATG  449

seq1  TGTGTATGTAAATCAACTATTTTCTCTGTCTCTGTCTCTCTCTTTGTGTG  459
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTAAATCAACTATTTTCTCTGTCTCTGTCTCTCTCTTTGTGTG  499

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG  509
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG  549

seq1  TCTAGCTCTGGCTGTCCTGGAAC-TTGTCCTCCATACTAGTCTGACCTCA  558
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTAGCTCTGGCTGTCCTGGAACTTTGTCCTCCATACTAGTCTGACCTCA  599

seq1  AACTCACAGAGATCCACTTGCCTCTGCCTCCTGAGTTCTGGGATCAGAGG  608
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAGATCCACTTGCCTCTGCCTCCTGAGTTCTGGGATCAGAGG  649

seq1  CATTCGTCACCGCCACCTTCTCGCTGTAAATTTCATTCTTCATACCCACA  658
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTCACCGCCACCTTCTCGCTGTAAATTTCATTCTTCATACCCACA  699

seq1  CAAGCATTTCCGAGGCTTTCTATGGATCTTGGTTCTGGCCTGGGCTTCGG  708
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTTCCGAGGCTTTCTATGGATCTTGGTTCTGGCCTGGGCTTCGG  749

seq1  TGCTGCTTGTTCTCCCAGGGACAGCAAGCATCACAGTGACTTCCTTTTCT  758
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTGTTCTCCCAGGGACAGCAAGCATCACAGTGACTTCCTTTTCT  799

seq1  GGCCAGGATTTCAGTGAGGAAGAATTTGTGTATGATTGATGGTTTGGAAG  808
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGATTTCAGTGAGGAAGAATTTGTGTATGATTGATGGTTTGGAAG  849

seq1  ATCCAGGGACATTGAACAGATCCAGCGACTCTGATCAGTCACACTAGAAA  858
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGACATTGAACAGATCCAGCGACTCTGATCAGTCACACTAGAAA  899

seq1  ACATGTTTTCCTTCTTTCAAAAAAATTTACTCCTTCCTTTTTTTCTTTGG  908
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTTCCTTCTTTCAAAAAAATTTACTCCTTCCTTTTTTTCTTTGG  949

seq1  CTTTTGAGACAGGGTCTCACCATATGACTCTGGCTGGCCTAGAACTCCCT  958
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGACAGGGTCTCACCATATGACTCTGGCTGGCCTAGAACTCCCT  999

seq1  ATGTAGACCAAGCCAACCTCAAACTCTCAGCGATCCTCCTGCCTCTACCT  1008
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACCAAGCCAACCTCAAACTCTCAGCGATCCTCCTGCCTCTACCT  1049

seq1  CCAGAGTATTAGGATTAGAGGCATGAGCCTCCACACCAGGTTGTGCATCT  1058
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTATTAGGATTAGAGGCATGAGCCTCCACACCAGGTTGTGCATCT  1099

seq1  TTCTGAACTTCACATTCCTGTCCTAGCCAGTCCCTGATGCTGTCCCAAGC  1108
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTTCACATTCCTGTCCTAGCCAGTCCCTGATGCTGTCCCAAGC  1149

seq1  CCCATCCTAAGCCTCTCTCCCACCCTTTACACCTGAGCTTTGTGGGCCCA  1158
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTAAGCCTCTCTCCCACCCTTTACACCTGAGCTTTGTGGGCCCA  1199

seq1  TTATTCACCTGTTTAGTTGCCCTTGAATTC  1188
      ||||||||||||||||||||||||||||||
seq2  TTATTCACCTGTTTAGTTGCCCTTGAATTC  1229