BAC Information

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BAC

Clone NameB6Ng01-293L01
Chromosome8 (Build37)
Map Location 18,523,059 - 18,658,718
singlet/doubletdoublet
Overlap geneMcph1
Upstream geneCsmd1, LOC665638, LOC100040466
Downstream geneAngpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293L01.bB6Ng01-293L01.g
ACCGA090008GA090009
length1,219758
definitionB6Ng01-293L01.b B6Ng01-293L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,657,504 - 18,658,718)(18,523,059 - 18,523,813)
sequence
gaattcttgctccaattttatgcttgacagaccacaaatatgtcttagag
ctattttgctgcatctgatcttttatctgtaagactacttactatatatg
cgcgtgccatggagtgcacatggaggtcagaggtcagttctctcttttca
ttatgcagatcccagggaataacaacaggctgtcaggtttgcagtgagca
tcttcaccaactagcccatctggttggctgctcctaactttataagtagg
tatacttcctactccttttggaagataaggttcgtcattatttacagatg
ccttccctaagctttgtgctttgtactccagttcaacctaacctctccat
tgctatggcttttataattaactctcatcagatcttttgtgatttgaaaa
tgggcatttaagttattcccacccatcttgtattttgctttgttctgacc
ctcagccccctggggggatttaactgaggtttccagaaccctgaaaagaa
gattaaccctggggagtgctaaccagccagaacagtgtatcactgctgaa
accagtgtacctaaatgagctatgggggcgggagtgacccaggtttttag
ttggttgatgtatctgtgttctgtgctgtgtgttaaacaggagacccttc
ccctttatgctatttggatctcataatgacttgaagatatacttactata
ttttcacaaacataaaagacggatttgacgatgaattcttattctttctc
cctgtttggtctttccagaattcagaaattgtgatataatttttttttgt
agagggttaaaaatagtttgttttccccgttattgggaagtaattgaaca
ctggttacaatggcagcattttcttcaatgtcacatttgagaataatgtt
cccttaatcagtagccaccacacatttaaaggaacccatgtttgctttag
agacccagagtctacaatattctccaggtaaacaagagtggatctgctta
aggtcttcagcctttcaagtcaatgagaatgtccacccttgttcaccaaa
tgttcagaagccgtcagacatttggagtaaagggaagtcttccctaaaca
taacaagctcttagcgactgcagcaaggcccgtctagcttaagctttcga
accaagaaggctgtttacttgtcgctggacttctcacaagcccaatggtt
ggagataataaggcttgat
gaattcacctcccttcaaggaacacagcgagaaggactgaaagggcaagt
gtgtcaatgtcagatgtttctgtggaaacattcataggcaacacctgatc
ttcctcaaaaaacagaaacaaccaatgcacagcagcagaagaggggaaca
aactgcagcgtattcccatgagagaaaaaaaagcaagtgtacaagtccac
acagcatgtgggtgagttgtttaagcacatttgagtcaaagaagccaaca
gtgaatagcctccatgtttccacttagaaaatgctcaaaaaacaaggtgt
tataagtccttgagaaagcccatcccagggacaaagagggccggaaggag
cctctgcaatcccaaaagttttttgtttggtttggttttctgatttagtc
cagggtttcataaaatacagcaaactctacactagaatatttttcatgag
tgcatgtcctcctgttttttggtttttgggtttggtttttgtttgtttgt
ttgtttgttttttcgagacaaggtttctctgtgtagctctggctgtcctg
gaactcactttgtagatcaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccgagtgttgggattaaaggcatgcgccaccacgcccggctt
tctacttctgttttaaataaaattatcaatccacatgtttttttgaagaa
tgtggggttatatagatgtttcctaattaacaacatcaaaaagaataaga
atgaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18657504_18658718
seq2: B6Ng01-293L01.b_46_1264 (reverse)

seq1  ATCAAGCC---TTATCTCCAACCACTGGGGGCCTTTGTTGAAGAGTCCAG  47
      ||||||||   ||||||||||||| ||||   |||   |||  |||||||
seq2  ATCAAGCCTTATTATCTCCAACCATTGGG---CTT--GTGAGAAGTCCAG  45

seq1  CGGCACGTTTAACAGCC-TCTTGTGTCTGGAAGC-TGAGCTAGACGGGGC  95
      || || | | ||||||| ||||| ||  | |||| | ||||||||||| |
seq2  CGACAAG-TAAACAGCCTTCTTG-GTTCGAAAGCTTAAGCTAGACGGGCC  93

seq1  TTGCTGCAGGTCGGCTAGAGCCTGTTATGTTT--GGGAGACTTCCCTTAC  143
      |||||||| ||||   ||||| ||||||||||  || |||||||||||  
seq2  TTGCTGCA-GTCGCTAAGAGCTTGTTATGTTTAGGGAAGACTTCCCTTTA  142

seq1  CTCCAAATGTCCTGCGGCTTCTG-ACATTTGGTGA--CAGGGT-GACATT  189
      |||||||||||   ||||||||| |||||||||||   ||||| ||||||
seq2  CTCCAAATGTCTGACGGCTTCTGAACATTTGGTGAACAAGGGTGGACATT  192

seq1  CCTCATTGACTTG-AAGGCTGAAGACCCTTAAGCAGATCCACTCTTGTTT  238
       |||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  -CTCATTGACTTGAAAGGCTGAAGA-CCTTAAGCAGATCCACTCTTGTTT  240

seq1  ACCTGGAGAATATTGTAGACTCTGGGTCTCTAAAGCAAACATGGGTTCC-  287
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCTGGAGAATATTGTAGACTCTGGGTCTCTAAAGCAAACATGGGTTCCT  290

seq1  TTAAATGTGTGGTGGCTACTGATTAAGGGAACATTATTCTCAAATGTGAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTGTGGTGGCTACTGATTAAGGGAACATTATTCTCAAATGTGAC  340

seq1  ATTGAAGAAAATGCTGCCATTGTAACCAGTGTTCAATTACTTCCCAATAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAAAATGCTGCCATTGTAACCAGTGTTCAATTACTTCCCAATAA  390

seq1  CGGGGAAAACAAACTATTTTTAACCCTCTAC-AAAAAAAATTATATCACA  436
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGGGGAAAACAAACTATTTTTAACCCTCTACAAAAAAAAATTATATCACA  440

seq1  ATTTCTGAATTCTGGAAAGACCAAACAGGGAGAAAGAATAAGAATTCATC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAATTCTGGAAAGACCAAACAGGGAGAAAGAATAAGAATTCATC  490

seq1  GTCAAATCCGTCTTTTATGTTTGTGAAAATATAGTAAGTATATCTTCAAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCCGTCTTTTATGTTTGTGAAAATATAGTAAGTATATCTTCAAG  540

seq1  TCATTATGAGATCCAAATAGCATAAAGGGGAAGGGTCTCCTGTTTAACAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGAGATCCAAATAGCATAAAGGGGAAGGGTCTCCTGTTTAACAC  590

seq1  ACAGCACAGAACACAGATACATCAACCAACTAAAAACCTGGGTCACTCCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAGAACACAGATACATCAACCAACTAAAAACCTGGGTCACTCCC  640

seq1  GCCCCCATAGCTCATTTAGGTACACTGGTTTCAGCAGTGATACACTGTTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCATAGCTCATTTAGGTACACTGGTTTCAGCAGTGATACACTGTTC  690

seq1  TGGCTGGTTAGCACTCCCCAGGGTTAATCTTCTTTTCAGGGTTCTGGAAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTTAGCACTCCCCAGGGTTAATCTTCTTTTCAGGGTTCTGGAAA  740

seq1  CCTCAGTTAAATCCCCCCAGGGGGCTGAGGGTCAGAACAAAGCAAAATAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTAAATCCCCCCAGGGGGCTGAGGGTCAGAACAAAGCAAAATAC  790

seq1  AAGATGGGTGGGAATAACTTAAATGCCCATTTTCAAATCACAAAAGATCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTGGGAATAACTTAAATGCCCATTTTCAAATCACAAAAGATCT  840

seq1  GATGAGAGTTAATTATAAAAGCCATAGCAATGGAGAGGTTAGGTTGAACT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGTTAATTATAAAAGCCATAGCAATGGAGAGGTTAGGTTGAACT  890

seq1  GGAGTACAAAGCACAAAGCTTAGGGAAGGCATCTGTAAATAATGACGAAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACAAAGCACAAAGCTTAGGGAAGGCATCTGTAAATAATGACGAAC  940

seq1  CTTATCTTCCAAAAGGAGTAGGAAGTATACCTACTTATAAAGTTAGGAGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTCCAAAAGGAGTAGGAAGTATACCTACTTATAAAGTTAGGAGC  990

seq1  AGCCAACCAGATGGGCTAGTTGGTGAAGATGCTCACTGCAAACCTGACAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCAGATGGGCTAGTTGGTGAAGATGCTCACTGCAAACCTGACAG  1040

seq1  CCTGTTGTTATTCCCTGGGATCTGCATAATGAAAAGAGAGAACTGACCTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTTATTCCCTGGGATCTGCATAATGAAAAGAGAGAACTGACCTC  1090

seq1  TGACCTCCATGTGCACTCCATGGCACGCGCATATATAGTAAGTAGTCTTA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCATGTGCACTCCATGGCACGCGCATATATAGTAAGTAGTCTTA  1140

seq1  CAGATAAAAGATCAGATGCAGCAAAATAGCTCTAAGACATATTTGTGGTC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAGATCAGATGCAGCAAAATAGCTCTAAGACATATTTGTGGTC  1190

seq1  TGTCAAGCATAAAATTGGAGCAAGAATTC  1215
      |||||||||||||||||||||||||||||
seq2  TGTCAAGCATAAAATTGGAGCAAGAATTC  1219

seq1: chr8_18523059_18523813
seq2: B6Ng01-293L01.g_67_824

seq1  GAATTCACCTCCCTTCAAGGAACACAGCGAGAAGGACTGAAAGGGCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCCTTCAAGGAACACAGCGAGAAGGACTGAAAGGGCAAGT  50

seq1  GTGTCAATGTCAGATGTTTCTGTGGAAACATTCATAGGCAACACCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATGTCAGATGTTTCTGTGGAAACATTCATAGGCAACACCTGATC  100

seq1  TTCCTCAAAAAACAGAAACAACCAATGCACAGCAGCAGAAGAGGGGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAAAACAGAAACAACCAATGCACAGCAGCAGAAGAGGGGAACA  150

seq1  AACTGCAGCGTATTCCCATGAGAGAAAAAAAAGCAAGTGTACAAGTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGCGTATTCCCATGAGAGAAAAAAAAGCAAGTGTACAAGTCCAC  200

seq1  ACAGCATGTGGGTGAGTTGTTTAAGCACATTTGAGTCAAAGAAGCCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTGGGTGAGTTGTTTAAGCACATTTGAGTCAAAGAAGCCAACA  250

seq1  GTGAATAGCCTCCATGTTTCCACTTAGAAAATGCTCAAAAAACAAGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGCCTCCATGTTTCCACTTAGAAAATGCTCAAAAAACAAGGTGT  300

seq1  TATAAGTCCTTGAGAAAGCCCATCCCAGGGACAAAGAGGGCCGGAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTCCTTGAGAAAGCCCATCCCAGGGACAAAGAGGGCCGGAAGGAG  350

seq1  CCTCTGCAATCCCAAAAGTTTTTTGTTTGGTTTGGTTTTCTGATTTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAATCCCAAAAGTTTTTTGTTTGGTTTGGTTTTCTGATTTAGTC  400

seq1  CAGGGTTTCATAAAATACAGCAAACTCTACACTAGAATATTTTTCATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCATAAAATACAGCAAACTCTACACTAGAATATTTTTCATGAG  450

seq1  TGCATGTCCTCCTGTTTTTTGGTTTTTGGGTTTGGTTTTTGTTTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCCTCCTGTTTTTTGGTTTTTGGGTTTGGTTTTTGTTTGTTTGT  500

seq1  TTGTTTGTTTTTTCGAGACAAGGTTTCTCTGTGTAGCTCTGGCTGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTCGAGACAAGGTTTCTCTGTGTAGCTCTGGCTGTCCTG  550

seq1  GAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  600

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGCTT  650
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGTTGGGATTAAAGGCATGCGCCACCACGCCCGGCTT  650

seq1  TCTACTTCTGTTTTAAATAAAATTATCAATCCACATG-TTTTTTGAAGAA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTACTTCTGTTTTAAATAAAATTATCAATCCACATGTTTTTTTGAAGAA  700

seq1  TGTGGGGTTATATAGATGTTT-CTAATTAACAACATCAAAAAGAAGAAG-  747
      ||||||||||||||||||||| ||||||||||||||||||||||| ||| 
seq2  TGTGGGGTTATATAGATGTTTCCTAATTAACAACATCAAAAAGAATAAGA  750

seq1  AGGAAGAA  755
      | ||||||
seq2  ATGAAGAA  758