BAC Information

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BAC

Clone NameB6Ng01-294H20
Chromosome8 (Build37)
Map Location 78,575,162 - 78,576,324
singlet/doubletsinglet
Overlap genenone
Upstream geneTom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294H20.bB6Ng01-294H20.g
ACCGA090602GA090603
length1,157259
definitionB6Ng01-294H20.b B6Ng01-294H20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgggaatacagatttattgttcctaaatctcaaagactgacat
gtcaggaatttgaaaacactgagaaacttgtctgttactttttttaaccg
tatgttataattcttaactgtgttgctgttgatgaatgaatgcactgttt
taatatttaaaaaagacctgaaacttgctggaaagaggttcagtgtcaaa
aaaaaaagaaagaaagaaagacaagatgaatataagggaagacacagaca
tatagcatatagcaggatgaagagaaacagtgagtgggtgtctttgagaa
agtttcattttctcaatgtacaagaacaccttctatattgacagcagatt
caggcaagtcaagactggatctgtgaatgtggtttgtacagagctgtttt
taagaatgcaccttacagttacaaagtattgagtaagttgggttttaaga
gtaagttaccctccaaattttaaggtaattacttagcagccatatttcta
tgtactgaggagcagtcattccaattgcacatacgaaagtacttcatcta
ccatcttaaaaagctagcctttggctgtggttaagatactctctcaacct
tcacaatctctctgtctctcttggaatctttagattcttttgttaagtaa
agcccttttctgctttcagttagttattaggatttttcttaagccccagc
tggcatgcttggctcttctgactctcaatcccctgtgtagtcaagggcaa
accactgcacctttcttttctgaattttcttgctcttagcttttcctgtt
ttctggtcaagaagcttgggctcctatttctgcatctggttctgtgggta
agttctgctgtgtgggtctttggtatcatcgccgaatttgctctccttcc
ccactctgtgttctagcagacataatctgatctgtgttatgtgacagacc
aattagtctcgcccactcagcagccttctgtccctccctctcagatgctc
tgctcttggcactcactctttttaggagtgagctgggagccactttctag
cagatcattagaatgatatatgcagtcagatgcataaacgcctcagattc
ctctaatggactaggatccaggtcttctgactggtctcatgttttatgtt
ctgtcag
aatttaatgtttcctcagaaattttgacatagtactacctgaagacccag
ccataccactcctgcgcatctaaccagaatatgctccaacatgtaataag
gacacatgctccactatgctcattgcagacttatttgtaatagccagaaa
tgggtcccttggtcctgtgaaggctttttgctgcagtataggggaatgcc
agggcctggaagcaggagtgggtgagctggtgggaaggaggaagggaaga
ggatagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78575162_78576324
seq2: B6Ng01-294H20.b_46_1202

seq1  GAATTCCTGGGAATACAGATTTATTGTTCCTAAATCTCAAAGACTGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAATACAGATTTATTGTTCCTAAATCTCAAAGACTGACAT  50

seq1  GTCAGGAATTTGAAAACACTGAGAAACTTGTCTGTTACTTTTTTTAACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATTTGAAAACACTGAGAAACTTGTCTGTTACTTTTTTTAACCG  100

seq1  TATGTTATAATTCTTAACTGTGTTGCTGTTGATGAATGAATGCACTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATAATTCTTAACTGTGTTGCTGTTGATGAATGAATGCACTGTTT  150

seq1  TAATATTTAAAAAAGACCTGAAACTTGCTGGAAAGAGGTTCAGTGTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAAAAAAGACCTGAAACTTGCTGGAAAGAGGTTCAGTGTCAAA  200

seq1  AAAAAAAGAAAGAAAGAAAGACAAGATGAATATAAGGGAAGACACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGAAAGAAAGACAAGATGAATATAAGGGAAGACACAGACA  250

seq1  TATAGCATATAGCAGGATGAAGAGAAACAGTGAGTGGGTGTCTTTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATATAGCAGGATGAAGAGAAACAGTGAGTGGGTGTCTTTGAGAA  300

seq1  AGTTTCATTTTCTCAATGTACAAGAACACCTTCTATATTGACAGCAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATTTTCTCAATGTACAAGAACACCTTCTATATTGACAGCAGATT  350

seq1  CAGGCAAGTCAAGACTGGATCTGTGAATGTGGTTTGTACAGAGCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGTCAAGACTGGATCTGTGAATGTGGTTTGTACAGAGCTGTTTT  400

seq1  TAAGAATGCACCTTACAGTTACAAAGTATTGAGTAAGTTGGGTTTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCACCTTACAGTTACAAAGTATTGAGTAAGTTGGGTTTTAAGA  450

seq1  GTAAGTTACCCTCCAAATTTTAAGGTAATTACTTAGCAGCCATATTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTACCCTCCAAATTTTAAGGTAATTACTTAGCAGCCATATTTCTA  500

seq1  TGTACTGAGGAGCAGTCATTCCAATTGCACATACGAAAGTACTTCATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAGGAGCAGTCATTCCAATTGCACATACGAAAGTACTTCATCTA  550

seq1  CCATCTTAAAAAGCTAGCCTTTGGCTGTGGTTAAGATACTCTCTCAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAAAAAGCTAGCCTTTGGCTGTGGTTAAGATACTCTCTCAACCT  600

seq1  TCACAATCTCTCTGTCTCTCTTGGAATCTTTAGATTCTTTTGTTAAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCTCTCTGTCTCTCTTGGAATCTTTAGATTCTTTTGTTAAGTAA  650

seq1  AGCCCTTTTCTGCTTTCAGTTAGTTATTAGGATTTTTCTTAAGCCCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTTCTGCTTTCAGTTAGTTATTAGGATTTTTCTTAAGCCCCAGC  700

seq1  TGGCATGCTTGGCTCTTCTGACTCTCAATCCCCTGTGTAGTCAAGGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCTTGGCTCTTCTGACTCTCAATCCCCTGTGTAGTCAAGGGCAA  750

seq1  ACCACTGCACCTTTCTTTTCTGAATTTTCTTGCTCTTAGCTTTTCCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCACCTTTCTTTTCTGAATTTTCTTGCTCTTAGCTTTTCCTGTT  800

seq1  TTCTGGTCAAGAAGCTTGGGCTCCTATTTCTGCATCTGGTTCTGTGGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCAAGAAGCTTGGGCTCCTATTTCTGCATCTGGTTCTGTGGGTA  850

seq1  AGTTCTGCTGTGTGGGTCTTTGGTATCATCGCCGAA-TTGCTCTCCTTCC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTCTGCTGTGTGGGTCTTTGGTATCATCGCCGAATTTGCTCTCCTTCC  900

seq1  CCACTCTGTGTTCTAGCAGACATAATCTGATCTGTGTTATGTGACAAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCACTCTGTGTTCTAGCAGACATAATCTGATCTGTGTTATGTGAC-AGAC  949

seq1  CAATTAGTCTCGCCCACTCAGCAGCCTTCTGTCCCTCCCTCTCAGATGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTCTCGCCCACTCAGCAGCCTTCTGTCCCTCCCTCTCAGATGCT  999

seq1  CTGCTCTTGGCACTCCACCTCTTTTAGGAAGTGAAGCTGGGAGCCAACTT  1049
      |||||||||||||||   |||||||  | |||| ||||||||||| ||||
seq2  CTGCTCTTGGCACTC--ACTCTTTTTAGGAGTG-AGCTGGGAGCC-ACTT  1045

seq1  TCCTAGCAGAATTCATTAG-ATGA-ATATGCAGGTCCAGATTGCATAAAC  1097
      | ||||||||  ||||||| |||| ||||||||   |||| |||||||||
seq2  T-CTAGCAGA--TCATTAGAATGATATATGCAG--TCAGA-TGCATAAAC  1089

seq1  G-CTCAGA-TCCTCTAATGGGACTAAGAATCAAGTCTTCTGACTTGTCTC  1145
      | |||||| ||||||||| |||||| ||  || ||||||||||| |||||
seq2  GCCTCAGATTCCTCTAAT-GGACTAGGATCCAGGTCTTCTGACTGGTCTC  1138

seq1  ATGTTTTATGTT-TGTCAG  1163
      |||||||||||| ||||||
seq2  ATGTTTTATGTTCTGTCAG  1157