BAC Information

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BAC

Clone NameB6Ng01-295H10
Chromosome8 (Build37)
Map Location 52,600,612 - 52,743,322
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295H10.bB6Ng01-295H10.g
ACCGA091320GA091321
length270412
definitionB6Ng01-295H10.b B6Ng01-295H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,600,612 - 52,600,881)(52,742,905 - 52,743,322)
sequence
aggccgtctggaagagtagtaagtgctcttatatcctgaaccatttttcc
agcccctatttcttctttttcttaaatgaagcttttttaaaatttatttt
tgagaatttcatacatgaatattgaatttaagtaatttctatccttacct
tccctcttctaaattgtgccattattctcattgccaattttactgatatt
caggtcattttatttgagtatatactaagtatatggtatagaaataggtg
tgtgtgtgtatgtgtgtgtg

cagcacaactaggtctatacagagaaaccctgtcttggaaaaagaaaaaa
gaaaacaaaagaaacaaaggacaatgtcttatctaaaattttagaaatct
atttggtagattccaaaagccaaaagccatcaccccccttttaaatctag
gtagcatacatgatgtaaaagttaagccatcttcagtagtccatgattgg
ctctatctctgatgttcaggttgggaagtataaagggaaaggggaaagag
ggggaagtggggatagtccacatccagccagagtttctcctgtgctctgg
ttaagcagacatgggaaggctgacagatgctttccactcggcttctggtg
ggcatctaatccactgaccccactcgacaaggggaggacttggggcagcc
ccctgcctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52600612_52600881
seq2: B6Ng01-295H10.b_54_323

seq1  AGGCCGTCTGGAAGAGTAGTAAGTGCTCTTATATCCTGAACCATTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTCTGGAAGAGTAGTAAGTGCTCTTATATCCTGAACCATTTTTCC  50

seq1  AGCCCCTATTTCTTCTTTTTCTTAAATGAAGCTTTTTTAAAATTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTATTTCTTCTTTTTCTTAAATGAAGCTTTTTTAAAATTTATTTT  100

seq1  TGAGAATTTCATACATGAATATTGAATTTAAGTAATTTCTATCCTTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTCATACATGAATATTGAATTTAAGTAATTTCTATCCTTACCT  150

seq1  TCCCTCTTCTAAATTGTGCCATTATTCTCATTGCCAATTTTACTGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCTAAATTGTGCCATTATTCTCATTGCCAATTTTACTGATATT  200

seq1  CAGGTCATTTTATTTGAGTATATACTAAGTATATGGTATAGAAATAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATTTTATTTGAGTATATACTAAGTATATGGTATAGAAATAGGTG  250

seq1  TGTGTGTGTATGTGTGTGTG  270
      ||||||||||||||||||||
seq2  TGTGTGTGTATGTGTGTGTG  270


seq1: chr8_52742905_52743322
seq2: B6Ng01-295H10.g_68_485 (reverse)

seq1  ACCCAGGTTGGGGGCTGCCCCTTGTCCTCCCCTTGTCGAGTGGGGTCAGT  50
      |||||||  ||||||||||||  |||||||||||||||||||||||||||
seq2  ACCCAGGCAGGGGGCTGCCCCAAGTCCTCCCCTTGTCGAGTGGGGTCAGT  50

seq1  GGCTTAGATGCCCACCTGAAGCCGAGTGGAAAGCATCTGTCAGCCTTCCC  100
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGATTAGATGCCCACCAGAAGCCGAGTGGAAAGCATCTGTCAGCCTTCCC  100

seq1  ATGTCTGCTTAACCAGAGCACAGGAGAAACTCTGGCTGGATGTGGACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTTAACCAGAGCACAGGAGAAACTCTGGCTGGATGTGGACTAT  150

seq1  CCCCACTTCCCCCTCTTTCCCCTTTCCCTTTATACTTCCCAACCTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTCCCCCTCTTTCCCCTTTCCCTTTATACTTCCCAACCTGAACA  200

seq1  TCAGAGATAGAGCCAATCATGGACTACTGAAGATGGCTTAACTTTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATAGAGCCAATCATGGACTACTGAAGATGGCTTAACTTTTACAT  250

seq1  CATGTATGCTACCTAGATTTAAAAGGGGGGTGATGGCTTTTGGCTTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGCTACCTAGATTTAAAAGGGGGGTGATGGCTTTTGGCTTTTGG  300

seq1  AATCTACCAAATAGATTTCTAAAATTTTAGATAAGACATTGTCCTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACCAAATAGATTTCTAAAATTTTAGATAAGACATTGTCCTTTGTT  350

seq1  TCTTTTGTTTTCTTTTTTCTTTTTCCAAGACAGGGTTTCTCTGTATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTTCTTTTTTCTTTTTCCAAGACAGGGTTTCTCTGTATAGAC  400

seq1  CTAGTTGTGCTGGAATTC  418
      ||||||||||||||||||
seq2  CTAGTTGTGCTGGAATTC  418


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