BAC Information

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BAC

Clone NameB6Ng01-295L02
Chromosome8 (Build37)
Map Location 78,598,632 - 78,665,416
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295L02.bB6Ng01-295L02.g
ACCGA091494GA091495
length1,1131,113
definitionB6Ng01-295L02.b B6Ng01-295L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,598,632 - 78,599,746)(78,664,295 - 78,665,416)
sequence
gaattccactccttctcatggtctcagtgcttctcctccaacctgtattc
tctactcttctccttaccctcccttctcttttcttgttggaggttaagtt
aaccaacatataaacaaacagcaccatttctaatctaagctagagaataa
ataaacccatgaccccacatgaccacacataactacacatgacctctaac
ccctactcatttgttgctcttgctccttgcctcacatctgctttatagag
ttcatctaccaaggctccactgaagtgacttatgttcaactgtgttcagc
tctgctaccagaagcagaattctggcatcatatacaggatatacggtgaa
gagaaaagaagacttatctcacccaagaataacagcctgtctcctagaat
catcaccttgagcattttcaatggctcccatagtgagaaattcaaaggtc
ggttttcagcccattgtaacctcaatgctgttgctcactttgtcttcctg
tggcttttggatgatgatggttttctagtttttcttctacccttctgttg
ttacatcttcctttattgagttttcctctagtgaactgaggcactgctct
attttttctttcttttttctcatccctcctttccttctctttccagcacc
tattcacaggctggcattaatgtttgcacagaagtgaaagctctaaagaa
aggaaagtcacatttagttacagcatatcacattgggcaatgccaagtca
caggccatctgtcacatggcatcagatacttctagaaattactgtcaaaa
gtttcatggtttttcaacatagaaccagcaaatctatgttgtggaggact
gtaggaaaaacaaacaaacaaacaaacaaacaaacaaaccagaccattgc
tccctgcttcttcattactgacatcagagctgcctatctgcacatttttg
tgataagcaacaagagttttgaaaactctagaatggctcttcaatattta
taccttgttgtatttctttcagatcttttaatatgtaagaattttgcatt
gatgaggtctcatgttttcagcagattgcacccaaactgcaaggaggtat
atggtaccatcac
gaattccaaggccaagaagtgggagtgagtgggcgggctagtgggtggga
gagcatgtgggtgacttttgggatagcattggaaatgtaaatgaaataaa
tacccaattaaaaataaattaattaattaattaaatttttaaaaagagag
agcttgacttaagaaaagagtaactcagaacaacggctggaatgctttag
ggatttttttttctgacactgcataccaatttttttttaggtcaacagat
actaagaactaaattattttacattaaattttctactatattcacttaaa
cattataatattagcaacaatctggtgaaagaatgtgagatcactgtaat
attttgatttgccaaaaacctatttccaaatgaggttatattcaaaggtt
ccagacacacacaaaattacatgggacagtattcaaactcttacaactct
aatatttcttcttcttcttcttctttttttatgttaggcagacatggaat
ctgagaacttacactgctactggaatttatgactgatacagcaaacacat
tcctctcttttcttccttaattaagcagatgtttatgaatgaacaggtat
tgtgtttcattgcttaggacatggatgtgttttatttcatccattaagtt
acttggccctatgaagtttagattctcaccacagtatatagcaaacaaga
aaatgctagttatttgatagcatttcagatatttagaggccaataattat
agaatgaaaagaaactccttgagcatagaatcactgaaagctgaaacctg
aacaaagatctgaagggtaagaaacagccagtcatgtgagtgtcaataaa
acatatatgacagagtcgtggtaattgcaaggcattgcatgatgatgcag
ctatggtctaaccaagggatttcagagagatgattctatgtggaatgcag
gtggcaaaggaaaatctgggccaggaggcaagaaatggaggtgagagcag
agtacttttgaccatgccagaattatattcacttcagttgaaattactga
tgttctactatgggaagaatgtatccatctgatttatggcttcaaaatag
ccttgagtatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78598632_78599746
seq2: B6Ng01-295L02.b_51_1163

seq1  GAATTCCACTCCTTCTCATGGTCTCAGTGCTTCTCCTCCAACCTGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCTTCTCATGGTCTCAGTGCTTCTCCTCCAACCTGTATTC  50

seq1  TCTACTCTTCTCCTTACCCTCCCTTCTCTTTTCTTGTTGGAGGTTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTTCTCCTTACCCTCCCTTCTCTTTTCTTGTTGGAGGTTAAGTT  100

seq1  AACCAACATATAAACAAACAGCACCATTTCTAATCTAAGCTAGAGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACATATAAACAAACAGCACCATTTCTAATCTAAGCTAGAGAATAA  150

seq1  ATAAACCCATGACCCCACATGACCACACATAACTACACATGACCTCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCATGACCCCACATGACCACACATAACTACACATGACCTCTAAC  200

seq1  CCCTACTCATTTGTTGCTCTTGCTCCTTGCCTCACATCTGCTTTATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCATTTGTTGCTCTTGCTCCTTGCCTCACATCTGCTTTATAGAG  250

seq1  TTCATCTACCAAGGCTCCACTGAAGTGACTTATGTTCAACTGTGTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTACCAAGGCTCCACTGAAGTGACTTATGTTCAACTGTGTTCAGC  300

seq1  TCTGCTACCAGAAGCAGAATTCTGGCATCATATACAGGATATACGGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACCAGAAGCAGAATTCTGGCATCATATACAGGATATACGGTGAA  350

seq1  GAGAAAAGAAGACTTATCTCACCCAAGAATAACAGCCTGTCTCCTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGAAGACTTATCTCACCCAAGAATAACAGCCTGTCTCCTAGAAT  400

seq1  CATCACCTTGAGCATTTTCAATGGCTCCCATAGTGAGAAATTCAAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTTGAGCATTTTCAATGGCTCCCATAGTGAGAAATTCAAAGGTC  450

seq1  GGTTTTCAGCCCATTGTAACCTCAATGCTGTTGCTCACTTTGTCTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGCCCATTGTAACCTCAATGCTGTTGCTCACTTTGTCTTCCTG  500

seq1  TGGCTTTTGGATGATGATGGTTTTCTAGTTTTTCTTCTACCCTTCTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGGATGATGATGGTTTTCTAGTTTTTCTTCTACCCTTCTGTTG  550

seq1  TTACATCTTCCTTTATTGAGTTTTCCTCTAGTGAACTGAGGCACTGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTCCTTTATTGAGTTTTCCTCTAGTGAACTGAGGCACTGCTCT  600

seq1  ATTTTTTCTTTCTTTTTTCTCATCCCTCCTTTCCTTCTCTTTCCAGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTTTCTTTTTTCTCATCCCTCCTTTCCTTCTCTTTCCAGCACC  650

seq1  TATTCACAGGCTGGCATTAATGTTTGCACAGAAGTGAAAGCTCTAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGGCTGGCATTAATGTTTGCACAGAAGTGAAAGCTCTAAAGAA  700

seq1  AGGAAAGTCACATTTAGTTACAGCATATCACATTGGGCAATGCCAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTCACATTTAGTTACAGCATATCACATTGGGCAATGCCAAGTCA  750

seq1  CAGGCCATCTGTCACATGGCATCAGATACTTCTAGAAATTACTGTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATCTGTCACATGGCATCAGATACTTCTAGAAATTACTGTCAAAA  800

seq1  GTTTCATGGTTTTTCAACATAGAACCAGCAAATCTATGTTGTGGAGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGGTTTTTCAACATAGAACCAGCAAATCTATGTTGTGGAGGACT  850

seq1  GTAGGAAAAACAAACAAACAAACAAACAAACAAACAAACCAGACCATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAAACAAACAAACAAACAAACAAACAAACAAACCAGACCATTGC  900

seq1  TCCCTGCTTCTTCATTACTGACATCAGAGCTGCCTATCTGCACA-TTTTG  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCCTGCTTCTTCATTACTGACATCAGAGCTGCCTATCTGCACATTTTTG  950

seq1  TGATAAGCAACAAGAGTTTTGAAAACTCTAGAATGGCTCTTCAATATTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGCAACAAGAGTTTTGAAAACTCTAGAATGGCTCTTCAATATTTA  1000

seq1  TACCTTGTTGTATTTCTTTCAGGATC-TTTAATATGTAAGAA-TTTGCAT  1047
      ||||||||||||||||||||| |||| ||||||||||||||| |||||| 
seq2  TACCTTGTTGTATTTCTTTCA-GATCTTTTAATATGTAAGAATTTTGCA-  1048

seq1  TTGATTGGAGGTCTCATGTTTTCAAGCAGATTTGCACCCAAAACTGC-AG  1096
      |||||  |||||||||||||||| |||||| |||||||| ||||||| ||
seq2  TTGAT--GAGGTCTCATGTTTTC-AGCAGA-TTGCACCC-AAACTGCAAG  1093

seq1  GAGGTATATGG-AACATCAC  1115
      ||||||||||| | ||||||
seq2  GAGGTATATGGTACCATCAC  1113

seq1: chr8_78664295_78665416
seq2: B6Ng01-295L02.g_69_1181 (reverse)

seq1  TGCATACTCAAAAGCTTATTTTTGAAAGCATAAATCAGAT-GATACAT--  47
      ||||||||| || |||   |||||||  |||||||||||| |||||||  
seq2  TGCATACTC-AAGGCT--ATTTTGAAGCCATAAATCAGATGGATACATTC  47

seq1  CTCCCATAGTTAGAACATTCAGGTAATTTCAACTTAAAGTGAAATATAAA  97
       |||||||| ||||||| ||| ||||||||||| | ||||| ||||| ||
seq2  TTCCCATAG-TAGAACA-TCA-GTAATTTCAAC-TGAAGTG-AATAT-AA  91

seq1  TTCTTGGCATGGTCAAAAGTACTCTGCTCTCACCTCCATTTCTTGCCTCC  147
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-TGGCATGGTCAAAAGTACTCTGCTCTCACCTCCATTTCTTGCCTCC  140

seq1  TGGCCCAGATTTTCCCTTTGCCACCTGCATTCCACATAGATTCATCTCTC  197
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  TGGCCCAGATTTT-CCTTTGCCACCTGCATTCCACATAGAATCATCTCTC  189

seq1  TGAAATCCCTTGGTTAGACCATAGCTGCATCATCATGCAATGCCTTTGCA  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAAATCCCTTGGTTAGACCATAGCTGCATCATCATGCAATGCC-TTGCA  238

seq1  ATTACCACGACTCTGTCATATATGTTTTATTGACACTCACATGACTGGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACGACTCTGTCATATATGTTTTATTGACACTCACATGACTGGCT  288

seq1  GTTTCTTACCCTTCAGATCTTTGTTCAGGTTTCAGCTTTCAGTGATTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTACCCTTCAGATCTTTGTTCAGGTTTCAGCTTTCAGTGATTCTA  338

seq1  TGCTCAAGGAGTTTCTTTTCATTCTATAATTATTGGCCTCTAAATATCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGGAGTTTCTTTTCATTCTATAATTATTGGCCTCTAAATATCTG  388

seq1  AAATGCTATCAAATAACTAGCATTTTCTTGTTTGCTATATACTGTGGTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTATCAAATAACTAGCATTTTCTTGTTTGCTATATACTGTGGTGA  438

seq1  GAATCTAAACTTCATAGGGCCAAGTAACTTAATGGATGAAATAAAACACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAACTTCATAGGGCCAAGTAACTTAATGGATGAAATAAAACACA  488

seq1  TCCATGTCCTAAGCAATGAAACACAATACCTGTTCATTCATAAACATCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCCTAAGCAATGAAACACAATACCTGTTCATTCATAAACATCTG  538

seq1  CTTAATTAAGGAAGAAAAGAGAGGAATGTGTTTGCTGTATCAGTCATAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAAGGAAGAAAAGAGAGGAATGTGTTTGCTGTATCAGTCATAAA  588

seq1  TTCCAGTAGCAGTGTAAGTTCTCAGATTCCATGTCTGCCTAACATAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTAGCAGTGTAAGTTCTCAGATTCCATGTCTGCCTAACATAAAAA  638

seq1  AAGAAGAAGAAGAAGAAGAAATATTAGAGTTGTAAGAGTTTGAATACTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAATATTAGAGTTGTAAGAGTTTGAATACTGT  688

seq1  CCCATGTAATTTTGTGTGTGTCTGGAACCTTTGAATATAACCTCATTTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAATTTTGTGTGTGTCTGGAACCTTTGAATATAACCTCATTTGG  738

seq1  AAATAGGTTTTTGGCAAATCAAAATATTACAGTGATCTCACATTCTTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTTTTTGGCAAATCAAAATATTACAGTGATCTCACATTCTTTCA  788

seq1  CCAGATTGTTGCTAATATTATAATGTTTAAGTGAATATAGTAGAAAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGTTGCTAATATTATAATGTTTAAGTGAATATAGTAGAAAATTT  838

seq1  AATGTAAAATAATTTAGTTCTTAGTATCTGTTGACCTAAAAAAAAATTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATAATTTAGTTCTTAGTATCTGTTGACCTAAAAAAAAATTGG  888

seq1  TATGCAGTGTCAGAAAAAAAAATCCCTAAAGCATTCCAGCCGTTGTTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTGTCAGAAAAAAAAATCCCTAAAGCATTCCAGCCGTTGTTCTG  938

seq1  AGTTACTCTTTTCTTAAGTCAAGCTCTCTCTTTTTAAAAATTTAATTAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTTTTCTTAAGTCAAGCTCTCTCTTTTTAAAAATTTAATTAAT  988

seq1  TAATTAATTTATTTTTAATTGGGTATTTATTTCATTTACATTTCCAATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTATTTTTAATTGGGTATTTATTTCATTTACATTTCCAATGC  1038

seq1  TATCCCAAAAGTCACCCACATGCTCTCCCACCCACTAGCCCGCCCACTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAAAGTCACCCACATGCTCTCCCACCCACTAGCCCGCCCACTCA  1088

seq1  CTCCCACTTCTTGGCCTTGGAATTC  1122
      |||||||||||||||||||||||||
seq2  CTCCCACTTCTTGGCCTTGGAATTC  1113