BAC Information

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BAC

Clone NameB6Ng01-297I08
Chromosome8 (Build37)
Map Location 46,092,298 - 46,262,991
singlet/doubletdoublet
Overlap geneFat1, LOC100039673, Mtnr1a, EG622523
Upstream geneLOC100039508
Downstream geneF11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297I08.bB6Ng01-297I08.g
ACCGA092858GA092859
length1,1601,075
definitionB6Ng01-297I08.b B6Ng01-297I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,092,298 - 46,093,423)(46,261,975 - 46,262,991)
sequence
gaattcaccatttatttatcttaactctggagcaggtattagagatacag
gaagagaataagtcctggataacttcattttacctttaaaattctattct
gaccgaatgtctgatgaccaggagatgtagtagatttgagttcttccctt
tccataaaagttctgccctttgcccggtgttcccaagaatcgttagagca
agacagtgcacagtgtgcctgcggcttctgagtaaactagtccggtgtgg
gggtggatggtatttcgctctgatcaataagtgtccacccttttccaggt
ctcatcacaaccacgtcgaggaagctggaccgagaacagcaggacgagca
cattctagaagtaagccttcctttctttctttttttttttttttcctggt
ttttcgagacagggtttctcagtgtagccctggctgtcctggaactcact
ctgtagaccaagctggcctcaaactcagaaatccacctgcctcagcctcc
cgagtgctgggattaaaggtgtgcgccaccacacccggcccctttatttc
taacaaaacaccctgagagcaccctcactcctgccgtctgtcattcatgg
ctgccaatgtcttattatgaatatcccctctcccccacctcagtccatcc
tcagaggaaaggaactcagccccaagtaccccttagtacccttttgaact
ttgttcttctttacctgcgccccttacacaaatttacaaatacttttgta
accaaagtcatttgaattttatttgcaggagcgatgtttttctctgtacc
ttctgtagacttctcccggttatgcctgtaagacatatctatagatcaag
gctaactgttgataaactgtgtgttgttgatttccaggtggtttttaaca
cttaaatcatttgtgttagtcatatagtagtacactagaatttgtttgta
accctaaaggaaattttctaaaaatattcaaacgtccaaaggaggtgggg
ggtggaacatttcctctctaaaatattttgggttaatttcagatgttttt
gcactgactcggtttaagcccgtttttgttgggagaacattgtttcgcag
aactgaatgctgggagattgctcgattgtacgggttaaccttgatcatga
aggtgacagg
gaattctggggagaataaaattcccaggacccttattgcatccccctgtc
tgatggttattcattgtctggataaaatatatttttgatgaaaaagttaa
gagaaaaatgcttttatatgaaaaaaagatttatgtgacagaatgagatt
tttatcctaaaagaaaagatttctctaaagtaggaaaacagataacatca
aaactgaagttaaaatacactgtaagtttatatagaaattaaagagacat
gggtatcaccaaactgactgtgattaaaggttaataaaacttcttaatgt
caaaattcagtgtgtttatgccagactggagcctgactctccatttacaa
caataaagtgtcttaatgaagatactcacagccatgtagtttataaatta
gggtagtttataaattaaatatatgcgactaacatctgatagtcacttta
ttttcagagtctttatctttcaaaaagtcacactgctgcaggaggtatgt
ctagctctgatttaaatgacaagggagctggaagtttatgtgagtatcta
taaagcgagattatctttttgacttagttaattcagggagaaagtgttgt
aggatatttgatcacactgtggaacctgagattctattgtttgctggaaa
aacctgtttctagttgtgttgtggctcagctttagtatacacctttaatc
ccacacattgaaggcaaaatttgtagaagcaagcacctatgtttgaaagt
aatgtctaattgagcggcagtgatagaagagaatatgcccaactctcatg
agtaaagagtggtgacttcagagaaagcagtacagaggagggagggcagt
tttactgggagtattatatagattgcaggaagaacaagctatatataggt
gaaagaggaacaagccagaaaataagaaaggagccagaacgttattacca
aagtagtttgagccaagaagagcaatttggtcaaaagttgaaagaagcca
gatggaatcattcagctagagagagttgagccagaacaatctggagtgaa
ctagcagcagagttcagaaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46092298_46093423
seq2: B6Ng01-297I08.b_48_1207

seq1  GAATTCACCATTTATTTATCTTAACTCTGGAGCAGGTATTAGAGATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTATTTATCTTAACTCTGGAGCAGGTATTAGAGATACAG  50

seq1  GAAGAGAATAAGTCCTGGATAACTTCATTTTACCTTTAAAATTCTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATAAGTCCTGGATAACTTCATTTTACCTTTAAAATTCTATTCT  100

seq1  GACCGAATGTCTGATGACCAGGAGATGTAGTAGATTTGAGTTCTTCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAATGTCTGATGACCAGGAGATGTAGTAGATTTGAGTTCTTCCCTT  150

seq1  TCCATAAAAGTTCTGCCCTTTGCCCGGTGTTCCCAAGAATCGTTAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAAGTTCTGCCCTTTGCCCGGTGTTCCCAAGAATCGTTAGAGCA  200

seq1  AGACAGTGCACAGTGTGCCTGCGGCTTCTGAGTAAACTAGTCCGGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGCACAGTGTGCCTGCGGCTTCTGAGTAAACTAGTCCGGTGTGG  250

seq1  GGGTGGATGGTATTTCGCTCTGATCAATAAGTGTCCACCCTTTTCCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGATGGTATTTCGCTCTGATCAATAAGTGTCCACCCTTTTCCAGGT  300

seq1  CTCATCACAACCACGTCGAGGAAGCTGGACCGAGAACAGCAGGACGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACAACCACGTCGAGGAAGCTGGACCGAGAACAGCAGGACGAGCA  350

seq1  CATTCTAGAAGTAAGCCTTCCTTTCTTTCTTTTTTTTTTTTTTTCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAAGTAAGCCTTCCTTTCTTTCTTTTTTTTTTTTTTTCCTGGT  400

seq1  TTTTCGAGACAGGGTTTCTCAGTGTAGCCCTGGCTGTCCTGGAACTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCAGTGTAGCCCTGGCTGTCCTGGAACTCACT  450

seq1  CTGTAGACCAAGCTGGCCTCAAACTCAGAAATCCACCTGCCTCAGCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAAGCTGGCCTCAAACTCAGAAATCCACCTGCCTCAGCCTCC  500

seq1  CGAGTGCTGGGATTAAAGGTGTGCGCCACCACACCCGGCCCCTTTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGTGTGCGCCACCACACCCGGCCCCTTTATTTC  550

seq1  TAACAAAACACCCTGAGAGCACCCTCACTCCTGCCGTCTGTCATTCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAACACCCTGAGAGCACCCTCACTCCTGCCGTCTGTCATTCATGG  600

seq1  CTGCCAATGTCTTATTATGAATATCCCCTCTCCCCCACCTCAGTCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATGTCTTATTATGAATATCCCCTCTCCCCCACCTCAGTCCATCC  650

seq1  TCAGAGGAAAGGAACTCAGCCCCAAGTACCCCTTAGTACCCTTTTGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAAGGAACTCAGCCCCAAGTACCCCTTAGTACCCTTTTGAACT  700

seq1  TTGTTCTTCTTTACCTGCGCCCCTTACACAAATTTACAAATACTTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCTTTACCTGCGCCCCTTACACAAATTTACAAATACTTTTGTA  750

seq1  ACCAAAGTCATTTGAATTTTATTTGCAGGAGCGATGTTTTTCTCTGTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCATTTGAATTTTATTTGCAGGAGCGATGTTTTTCTCTGTACC  800

seq1  TTCTGTAGACTTCTCCCGGTTATGCCTGTAAGACATATCTATAGATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGACTTCTCCCGGTTATGCCTGTAAGACATATCTATAGATCAAG  850

seq1  GCTAACTGTTGATAAACTGTGTGTTGTTGATTTCCAGGTGGTTTTTAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGTTGATAAACTGTGTGTTGTTGATTTCCAGGTGGTTTTTAACA  900

seq1  CTTAAATCA-TTGTGTTAGTCATATAGTAGTACACTAGAATTTGTTTGTA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCATTTGTGTTAGTCATATAGTAGTACACTAGAATTTGTTTGTA  950

seq1  A-CCTAAA-GAAATTTTCTAAAAATA-TCAAACGT-CAAAGGAGGT-GGG  994
      | |||||| ||||||||||||||||| |||||||| |||||||||| |||
seq2  ACCCTAAAGGAAATTTTCTAAAAATATTCAAACGTCCAAAGGAGGTGGGG  1000

seq1  GGTGGAACATTTCCTCTTCTAAAATATTT--GGGTAATTTCAGATGTTTT  1042
      |||||||||||||||| ||||||||||||  || |||||||||||| |||
seq2  GGTGGAACATTTCCTC-TCTAAAATATTTTGGGTTAATTTCAGATG-TTT  1048

seq1  TTGCACTGACTC-GTTTTAGCCCGTTTTGGTTGGGAG-ACAATAGTTCGC  1090
      |||||||||||| |||| |||||||||| |||||||| ||| |  |||||
seq2  TTGCACTGACTCGGTTTAAGCCCGTTTTTGTTGGGAGAACATTGTTTCGC  1098

seq1  AGAA-TGACAGTGTGGGAG---------------TGGTT-----------  1113
      |||| ||| |   ||||||                ||||           
seq2  AGAACTGA-ATGCTGGGAGATTGCTCGATTGTACGGGTTAACCTTGATCA  1147

seq1  TGAAGGTGACAGG  1126
      |||||||||||||
seq2  TGAAGGTGACAGG  1160

seq1: chr8_46261975_46262991
seq2: B6Ng01-297I08.g_130_1143 (reverse)

seq1  TTTC-TTTCTGAACTCTGGCTGGCTAGTTCAACTCAGA-TGTTCTGGCTC  48
      |||| |||||||||||| ||| |||||||||   |||| |||||||||||
seq2  TTTCTTTTCTGAACTCT-GCT-GCTAGTTCACTCCAGATTGTTCTGGCTC  48

seq1  AAACTCCTCTCTAAGCTGATTGATTCCATCTGGCTTCTTTCAACTTTTGA  98
       |||| |||||| |||||| ||||||||||||||||||||||||||||||
seq2  -AACT-CTCTCT-AGCTGAATGATTCCATCTGGCTTCTTTCAACTTTTGA  95

seq1  CCAAATTGCTCTTCTTGGCCTCAAACTACCTTTGGTAAT-ACGTTCTGGC  147
      |||||||||||||||||| ||||||||| |||||||||| ||||||||||
seq2  CCAAATTGCTCTTCTTGG-CTCAAACTA-CTTTGGTAATAACGTTCTGGC  143

seq1  TCC-TTCTTATTTTCTGGCTTGTTCCTCTTTCACCTATATATAGCTTGTT  196
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTATTTTCTGGCTTGTTCCTCTTTCACCTATATATAGCTTGTT  193

seq1  CTTCCTGCAATCTATATAATACTCCCAGTAAAACTGCCCTCCCTCCTCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCAATCTATATAATACTCCCAGTAAAACTGCCCTCCCTCCTCTG  243

seq1  TACTGCTTTCTCTGAAGTCACCACTCTTTACTCATGAGAGTTGGGCATAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTCTCTGAAGTCACCACTCTTTACTCATGAGAGTTGGGCATAT  293

seq1  TCTCTTCTATCACTGCCGCTCAATTAGACATTACTTTCAAACATAGGTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTATCACTGCCGCTCAATTAGACATTACTTTCAAACATAGGTGC  343

seq1  TTGCTTCTACAAATTTTGCCTTCAATGTGTGGGATTAAAGGTGTATACTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTACAAATTTTGCCTTCAATGTGTGGGATTAAAGGTGTATACTA  393

seq1  AAGCTGAGCCACAACACAACTAGAAACAGGTTTTTCCAGCAAACAATAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGCCACAACACAACTAGAAACAGGTTTTTCCAGCAAACAATAGA  443

seq1  ATCTCAGGTTCCACAGTGTGATCAAATATCCTACAACACTTTCTCCCTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTTCCACAGTGTGATCAAATATCCTACAACACTTTCTCCCTGA  493

seq1  ATTAACTAAGTCAAAAAGATAATCTCGCTTTATAGATACTCACATAAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAAGTCAAAAAGATAATCTCGCTTTATAGATACTCACATAAACT  543

seq1  TCCAGCTCCCTTGTCATTTAAATCAGAGCTAGACATACCTCCTGCAGCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCCCTTGTCATTTAAATCAGAGCTAGACATACCTCCTGCAGCAG  593

seq1  TGTGACTTTTTGAAAGATAAAGACTCTGAAAATAAAGTGACTATCAGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTTTGAAAGATAAAGACTCTGAAAATAAAGTGACTATCAGATG  643

seq1  TTAGTCGCATATATTTAATTTATAAACTACCCTAATTTATAAACTACATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGCATATATTTAATTTATAAACTACCCTAATTTATAAACTACATG  693

seq1  GCTGTGAGTATCTTCATTAAGACACTTTATTGTTGTAAATGGAGAGTCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGTATCTTCATTAAGACACTTTATTGTTGTAAATGGAGAGTCAG  743

seq1  GCTCCAGTCTGGCATAAACACACTGAATTTTGACATTAAGAAGTTTTATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTCTGGCATAAACACACTGAATTTTGACATTAAGAAGTTTTATT  793

seq1  AACCTTTAATCACAGTCAGTTTGGTGATACCCATGTCTCTTTAATTTCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTAATCACAGTCAGTTTGGTGATACCCATGTCTCTTTAATTTCTA  843

seq1  TATAAACTTACAGTGTATTTTAACTTCAGTTTTGATGTTATCTGTTTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTTACAGTGTATTTTAACTTCAGTTTTGATGTTATCTGTTTTCC  893

seq1  TACTTTAGAGAAATCTTTTCTTTTAGGATAAAAATCTCATTCTGTCACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAGAGAAATCTTTTCTTTTAGGATAAAAATCTCATTCTGTCACAT  943

seq1  AAATCTTTTTTTCATATAAAAGCATTTTTCTCTTAACTTTTTCATCAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTTTCATATAAAAGCATTTTTCTCTTAACTTTTTCATCAAAA  993

seq1  ATATATTTTATCCAGACAATG  1017
      |||||||||||||||||||||
seq2  ATATATTTTATCCAGACAATG  1014