BAC Information

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BAC

Clone NameB6Ng01-297K16
Chromosome8 (Build37)
Map Location 109,073,210 - 109,237,578
singlet/doubletdoublet
Overlap geneCdh3, LOC100042734, Cdh1, Tmco7
Upstream geneAtp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297K16.bB6Ng01-297K16.g
ACCGA092970GA092971
length1,1251,180
definitionB6Ng01-297K16.b B6Ng01-297K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,073,210 - 109,074,341)(109,236,386 - 109,237,578)
sequence
gaattcccaccactagagagaataaggcaggagaatcacaaatttcatgt
ccgtccagactccaaagtgaaaccttgtctcagaaaacacatgcatacac
atacaagccccagatttctttgctgaaaagatagaatctatctcaggtgc
cttttcttggttttggctttcacttcacatgctcatagcagccagctgta
ggtgtgggacagggatgagccctaactactcagcacactgttccgaagtc
agcgtgggcaccaggaggtgaggagaaggggccaagggtgcagcacagaa
cagaacagacaccggctgccctgggagaatggcctcagcagcacagagag
ctgatagcaaggaggttagcaggcaggtgagtgctgcccgagagagaaag
cccaaagagagtcagggtaggaagtctgcagttttaactaggatgaacag
aacagcctccgtgaaggaggtattaaggaaataaagcctcggacgaggga
agagaagcagccatgcacatctgcagagcagcacatgccctgggatagga
ctgtggtggagactgcagcagctatgctggggaaagtgagaaatgacgtc
agagggttggtgggtgcgtgggcttgtcgtgggtcttatagactgctgga
aaaactctgggttcctttggaagtctctagaagatctgtaacgttggagt
gctataagattttatgatattcctactgaaaagcccatgcagggctaggg
tggaggcaagggactgttggagatggttgccataggttacaggtgagagg
atggtaggtgaccataatgagatgggaataagagttcatttggggccgag
cgagtagaaaaacaggatttaggagctggcccccgaggccttctgcatct
cagtgcccagactccccagcactgatcagtcagtcccctgatgtcccttc
cgtgagttaggtaaggacttgttcctggttacaaacccatcagagtccct
gggtgctgcttttggtctgtacactgtgggtgtgttgctagtgttgggtt
atttctgtcactgcataaaaatatcctgaacaacgcctgaatgggtggtg
gctggtgcctttagtcacaggtact
gaattcagggcatcagatatagcagcaagctaagattccctctctcggcc
atcttgccggcccccaacagtacatattaaagtgacccagctcaggcatg
gagagatggctcagcaattaggagcactggctgctctagcaaagcatggt
tcagttcccagcacccacatggtgattcacaactatgtgtaactccagtt
ccatgagatccaaagacctcttctggcctccacaggcaatggcttcacat
acctacatgctggcaaaatattcaaacacataaaaatttttaaaattttt
ttaaaaattaaagcccgagctcatattttcttggttttatgaacctattt
tatactttactgttttaaatgtttattgaaacatctaaactttcaacttg
attaaagtgtaacaaatttgttttctgttctatcaaaagtcctggtatca
aaataaaaccctatttggctgaaatgttcctggttactgggagtgtttac
acaagtaaagatcattaataaaatgcgaagggatgctaactctgaagccg
gcaagggagcaggctctgaagaccagtttcaactctgcttcagaaaatgc
tttccgagggtggaggaacggggctgtggttttctagtcagagggttgca
gggtgtaacgtacagaccagaagggagctgtggaaactgttacggctcaa
agcagactacactgacaatagagttgtgcaggcaaccctgaaggcagtct
ggggttcctttgtccctttcaggagatttccacatgccagagactgcacc
gcagctttcaaaggtgtctatgttaagttctacaggccttcaggtcttta
tgtaggttcagagggctgcggtacaacagaggatagacccacatttctgg
gcattgttcagtagtacacactgaacactactgccactctctgcttcact
gggaggtccctgagaatagagactggccctcagcatgtctgtatcaacct
tgcaaagcaccccacagcagtaggcctgcacacattcctgagagggacta
gagaaaaagaccagtgttcaaaagagtctgcttttattttcacaacagtt
tacgtatgtggaagagttaaatagctgcattcttttttggttgaatggag
cctcatgtaatcgaactacctctaactcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109073210_109074341
seq2: B6Ng01-297K16.b_47_1171

seq1  GAATTCCCACCACTAGAGAGAATAAGGCAGGAGAATCACAAATTTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCACTAGAGAGAATAAGGCAGGAGAATCACAAATTTCATGT  50

seq1  CCGTCCAGACTCCAAAGTGAAACCTTGTCTCAGAAAACACATGCATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCAGACTCCAAAGTGAAACCTTGTCTCAGAAAACACATGCATACAC  100

seq1  ATACAAGCCCCAGATTTCTTTGCTGAAAAGATAGAATCTATCTCAGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCCCCAGATTTCTTTGCTGAAAAGATAGAATCTATCTCAGGTGC  150

seq1  CTTTTCTTGGTTTTGGCTTTCACTTCACATGCTCATAGCAGCCAGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGGTTTTGGCTTTCACTTCACATGCTCATAGCAGCCAGCTGTA  200

seq1  GGTGTGGGACAGGGATGAGCCCTAACTACTCAGCACACTGTTCCGAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGACAGGGATGAGCCCTAACTACTCAGCACACTGTTCCGAAGTC  250

seq1  AGCGTGGGCACCAGGAGGTGAGGAGAAGGGGCCAAGGGTGCAGCACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGGCACCAGGAGGTGAGGAGAAGGGGCCAAGGGTGCAGCACAGAA  300

seq1  CAGAACAGACACCGGCTGCCCTGGGAGAATGGCCTCAGCAGCACAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGACACCGGCTGCCCTGGGAGAATGGCCTCAGCAGCACAGAGAG  350

seq1  CTGATAGCAAGGAGGTTAGCAGGCAGGTGAGTGCTGCCCGAGAGAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGCAAGGAGGTTAGCAGGCAGGTGAGTGCTGCCCGAGAGAGAAAG  400

seq1  CCCAAAGAGAGTCAGGGTAGGAAGTCTGCAGTTTTAACTAGGATGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAGAGTCAGGGTAGGAAGTCTGCAGTTTTAACTAGGATGAACAG  450

seq1  AACAGCCTCCGTGAAGGAGGTATTAAGGAAATAAAGCCTCGGACGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTCCGTGAAGGAGGTATTAAGGAAATAAAGCCTCGGACGAGGGA  500

seq1  AGAGAAGCAGCCATGCACATCTGCAGAGCAGCACATGCCCTGGGATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAGCCATGCACATCTGCAGAGCAGCACATGCCCTGGGATAGGA  550

seq1  CTGTGGTGGAGACTGCAGCAGCTATGCTGGGGAAAGTGAGAAATGACGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGAGACTGCAGCAGCTATGCTGGGGAAAGTGAGAAATGACGTC  600

seq1  AGAGGGTTGGTGGGTGCGTGGGCTTGTCGTGGGTCTTATAGACTGCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTGGTGGGTGCGTGGGCTTGTCGTGGGTCTTATAGACTGCTGGA  650

seq1  AAAACTCTGGGTTCCTTTGGAAGTCTCTAGAAGATCTGTAACGTTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGGGTTCCTTTGGAAGTCTCTAGAAGATCTGTAACGTTGGAGT  700

seq1  GCTATAAGATTTTATGATATTCCTACTGAAAAGCCCATGCAGGGCTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAGATTTTATGATATTCCTACTGAAAAGCCCATGCAGGGCTAGGG  750

seq1  TGGAGGCAAGGGACTGTTGGAGATGGTTGCCATAGGTTACAGGTGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAAGGGACTGTTGGAGATGGTTGCCATAGGTTACAGGTGAGAGG  800

seq1  ATGGTAGGTGACCATAATGAGATGGGAATAAGAGTTCATTTGGGGCCGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGGTGACCATAATGAGATGGGAATAAGAGTTCATTTGGGGCCGAG  850

seq1  CGAGTAGAAAAACAGGATTTAGGAGCTGGCCCCCGAGGCCTTCTGCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAGAAAAACAGGATTTAGGAGCTGGCCCCCGAGGCCTTCTGCATCT  900

seq1  CAGTGCCCAGACTCCCCAGCACTGATCAGTCAGTCCCCTGATGTCCCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTGCCCAGACTCCCCAGCACTGATCAGTCAGTCCCCTGATGTCCCTT-  949

seq1  CCGTGAGTTAGGTAAGGACTTTGTTCCTGGTTACAAACCCCATCAGAGTC  1000
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CCGTGAGTTAGGTAAGGAC-TTGTTCCTGGTTACAAA-CCCATCAGAGTC  997

seq1  CCT-GGTGCTGCTTTTTGGTCTGTTACACTGTTGGGTGTGTTTGCTAGTT  1049
      ||| |||||||| |||||||||| ||||||| |||||||| ||||||| |
seq2  CCTGGGTGCTGC-TTTTGGTCTG-TACACTG-TGGGTGTG-TTGCTAG-T  1042

seq1  GTTTGGTTTTATTTTCTGTCACTGCAATAAAATATCCTGACAAACG-CTG  1098
      ||| ||||    ||||||||||||||  ||||||||||||  |||| |||
seq2  GTTGGGTT---ATTTCTGTCACTGCATAAAAATATCCTGAACAACGCCTG  1089

seq1  GAT-GGTGGTGGCTTGTGCCTTTAGTCACA-GTACT  1132
       || |||||||||| ||||||||||||||| |||||
seq2  AATGGGTGGTGGCTGGTGCCTTTAGTCACAGGTACT  1125

seq1: chr8_109236386_109237578
seq2: B6Ng01-297K16.g_69_1248 (reverse)

seq1  ATGAGTTAGAGGTTAGTCTGGACTACATGAGCCCCTCCCCATTCAAACAA  50
      |||||||||||| |||| | || ||||||||     | |||||||| |||
seq2  ATGAGTTAGAGG-TAGT-TCGATTACATGAG----GCTCCATTCAACCAA  44

seq1  AAAAAGATGCAGGCTATTTTAACTTCTCCACATACGTAGACTGTTGTGAA  100
      ||||  ||||| |||| |||||||  |||||||||||| |||||||||||
seq2  AAAAGAATGCA-GCTA-TTTAACTCTTCCACATACGTAAACTGTTGTGAA  92

seq1  AATAAAAGCCAGACTCTTTTGACCACTGTGTC-TTTTCTCTAGTCCCTCT  149
      |||||||| ||||||||||||| ||||| ||| |||||||||||||||||
seq2  AATAAAAG-CAGACTCTTTTGAACACTG-GTCTTTTTCTCTAGTCCCTCT  140

seq1  CAGGAATGTGTGCCAGGCCCTACTGCTTGTGGGTGCTTTGCCAGGTTGAT  199
      |||||||||||| |||| |||||||||   ||||||||||| ||||||||
seq2  CAGGAATGTGTG-CAGG-CCTACTGCTGTGGGGTGCTTTGCAAGGTTGAT  188

seq1  ACAGACATGGCTGAGGGCCAGTCTCTATCCTCAGGGACCTCCCAGTGAAG  249
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGACAT-GCTGAGGGCCAGTCTCTATTCTCAGGGACCTCCCAGTGAAG  237

seq1  CAGAGAGTGGCAGTAGTGTTCAGTGTGTACCTACTGAACAATGCCCAGAA  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGAGAGTGGCAGTAGTGTTCAGTGTGTA-CTACTGAACAATGCCCAGAA  286

seq1  ATGTGGGTCTATCCTCTGTTGTACCGCAGCCCTCTGAACCTACATAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTCTATCCTCTGTTGTACCGCAGCCCTCTGAACCTACATAAAGA  336

seq1  CCTGAAGGCCTGTAGAACTTAACATAGACACCTTTGAAAGCTGCGGTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGCCTGTAGAACTTAACATAGACACCTTTGAAAGCTGCGGTGCA  386

seq1  GTCTCTGGCATGTGGAAATCTCCTGAAAGGGACAAAGGAACCCCAGACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGCATGTGGAAATCTCCTGAAAGGGACAAAGGAACCCCAGACTG  436

seq1  CCTTCAGGGTTGCCTGCACAACTCTATTGTCAGTGTAGTCTGCTTTGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGGTTGCCTGCACAACTCTATTGTCAGTGTAGTCTGCTTTGAGC  486

seq1  CGTAACAGTTTCCACAGCTCCCTTCTGGTCTGTACGTTACACCCTGCAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACAGTTTCCACAGCTCCCTTCTGGTCTGTACGTTACACCCTGCAAC  536

seq1  CCTCTGACTAGAAAACCACAGCCCCGTTCCTCCACCCTCGGAAAGCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTAGAAAACCACAGCCCCGTTCCTCCACCCTCGGAAAGCATTT  586

seq1  TCTGAAGCAGAGTTGAAACTGGTCTTCAGAGCCTGCTCCCTTGCCGGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCAGAGTTGAAACTGGTCTTCAGAGCCTGCTCCCTTGCCGGCTT  636

seq1  CAGAGTTAGCATCCCTTCGCATTTTATTAATGATCTTTACTTGTGTAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAGCATCCCTTCGCATTTTATTAATGATCTTTACTTGTGTAAAC  686

seq1  ACTCCCAGTAACCAGGAACATTTCAGCCAAATAGGGTTTTATTTTGATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGTAACCAGGAACATTTCAGCCAAATAGGGTTTTATTTTGATAC  736

seq1  CAGGACTTTTGATAGAACAGAAAACAAATTTGTTACACTTTAATCAAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTTTGATAGAACAGAAAACAAATTTGTTACACTTTAATCAAGTT  786

seq1  GAAAGTTTAGATGTTTCAATAAACATTTAAAACAGTAAAGTATAAAATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTAGATGTTTCAATAAACATTTAAAACAGTAAAGTATAAAATAG  836

seq1  GTTCATAAAACCAAGAAAATATGAGCTCGGGCTTTAATTTTTAAAAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAAACCAAGAAAATATGAGCTCGGGCTTTAATTTTTAAAAAAAT  886

seq1  TTTAAAAATTTTTATGTGTTTGAATATTTTGCCAGCATGTAGGTATGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTTTTATGTGTTTGAATATTTTGCCAGCATGTAGGTATGTGA  936

seq1  AGCCATTGCCTGTGGAGGCCAGAAGAGGTCTTTGGATCTCATGGAACTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGCCTGTGGAGGCCAGAAGAGGTCTTTGGATCTCATGGAACTGG  986

seq1  AGTTACACATAGTTGTGAATCACCATGTGGGTGCTGGGAACTGAACCATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACATAGTTGTGAATCACCATGTGGGTGCTGGGAACTGAACCATG  1036

seq1  CTTTGCTAGAGCAGCCAGTGCTCCTAATTGCTGAGCCATCTCTCCATGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTAGAGCAGCCAGTGCTCCTAATTGCTGAGCCATCTCTCCATGCC  1086

seq1  TGAGCTGGGTCACTTTAATATGTACTGTTGGGGGCCGGCAAGATGGCCGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGGTCACTTTAATATGTACTGTTGGGGGCCGGCAAGATGGCCGA  1136

seq1  GAGAGGGAATCTTAGCTTGCTGCTATATCTGATGCCCTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAATCTTAGCTTGCTGCTATATCTGATGCCCTGAATTC  1180