BAC Information

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BAC

Clone NameB6Ng01-297O16
Chromosome8 (Build37)
Map Location 24,837,824 - 24,838,957
singlet/doubletsinglet
Overlap geneZmat4
Upstream genePlat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297O16.bB6Ng01-297O16.g
ACCGA093160GA093161
length1,2101,120
definitionB6Ng01-297O16.b B6Ng01-297O16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttcagccataagataaacttttactctgaagttttcaggaat
atggacagaagtagaaaacatactgtgtgatgtaacacagacctgaagag
acaaatagcatatgctctctctgtgtgaagaagcctggcttcaaatattt
aaatacctgtatttaaaattgagtgtctattgaggtcaaagggcagggaa
ggaaccacagggtggtagggggactaaaggagagacaaaaccacagggaa
tctgaaagtgagatgagacatgcaggaaaaggtttacacagggttgggta
caggaattgggcaatgtaaagaccagccgaaactcgggattatgataaag
acatatacaaactcaccattttataaactaaaaatcataggtaaaagtgt
taacagtaagatagaacatgggacagaagtacctttaaagcttgggtaga
taatgcagatcccagaagtcacaggcatttattcaagaatgcagtagctt
atgggatagcctcttaaagatctgttggccagaggcctctctcagaacct
gcccgcttgcttcttctccagcattggacagtgatatgaagaacactggg
aaagaaaccttatcagcaatctcacacacctgagggcaagatatgctctc
tggggcagccataatatggctgtttggaggattacaagttgacttatggt
ttgctttgggatccactcaactggcaggaacacgcatctggtactagaga
tctggtcaaaagcccatggccagcaatatagctcagtgctagatactgag
cccaaagatttacatgggacccccaaaggacacatatggtgaaagtagag
aatagagtcccccaactctcttccaatctccacaagtatattgtatgtgt
gcccacaataaattttttaaagcatgtggctggagagcatgggcccaaag
gaggaacatactattgctatttacatgaattacatgtttttggctgtctt
ctaaatacttatgttaatatcatataccagccagtgcatctcatcatggg
gcagacttttctttaaggagaggaccaaagaatatacggaaacttattat
ctgttcaaggtaactggagatggaatggaccacaccctttaaaactgact
ctaattcatgcttcagcttccaagccagggcacaatgaggaaggcgcaag
acccttgata
gaattccagaaaggatgcaagctgttagggaagggcatttcatctgcgtg
gagttatgcattgtcagcggactgcctgaggctggcaggagcaccttgta
tggcaggaggaggactgagactttccctgaagcacctttgtcctcccatg
tcctcccttttcagtctttcctccctgccccttgctttaatttcagggcc
aagtggctttgggaacacgctgacttgttctttccctattctgtctcagt
ctcaaggaggcatagataacccaagaacctacagcctttgcagctgggag
agctttgtcctagacacaaggcagtttaatttcccagacgcccccgtgtg
atgaacagagaaagtcagagtggctacccattttacagttagagatgctg
aaaattagaaaagctgtgttgtccatggggactggattgttcctacttct
gtatcataggacttgggagggtggggtgccctttaaggacagaggatagt
gtgaagttacacttgtggaatttcggataaaagcccctctgagcccctct
gggcctcctgtcccaaacaagtggaggggaaactgctagagccctgtact
gtgctcttcctccaactctttcttgccagagtctagggtgtgtccttcct
gcctaccctctcctttctgcagtgcagtccctatctccaccttcctccaa
atggaaggctgctgaggcaggggaagccatgggacagcgaggtggaacct
cacagctccagcatgctgctagtttataccatttatcagaggaattgcaa
aaagaagcaatgcggtggttttaattactctgcatagagcaggctatcaa
acacccagagcgttaattacagactccacagccaggatggacagagcgtg
ccacagccttgtctgtatccttacattcagtaaagccatctccaccatct
ccaggtatctctagggcatccagatgagcgtgaaaccacaccaccagttc
ttcctccaggcagagggcagattgcatagaaagcaggcacaggtgggaga
gatggggcagaaggagagtttaagactttgaagaagaaaatgatgttatt
taaggagccattctagacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24837824_24838957
seq2: B6Ng01-297O16.g_71_1190

seq1  GAATTCCAGAAAGGATGCAAGCTGTTAGGGAAGGGCATTTCATCTGCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGGATGCAAGCTGTTAGGGAAGGGCATTTCATCTGCGTG  50

seq1  GAGTTATGCATTGTCAGCGGACTGCCTGAGGCTGGCAGGAGCACCTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGCATTGTCAGCGGACTGCCTGAGGCTGGCAGGAGCACCTTGTA  100

seq1  TGGCAGGAGGAGGACTGAGACTTTCCCTGAAGCACCTTTGTCCTCCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGGAGGACTGAGACTTTCCCTGAAGCACCTTTGTCCTCCCATG  150

seq1  TCCTCCCTTTTCAGTCTTTCCTCCCTGCCCCTTGCTTTAATTTCAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTTTCAGTCTTTCCTCCCTGCCCCTTGCTTTAATTTCAGGGCC  200

seq1  AAGTGGCTTTGGGAACACGCTGACTTGTTCTTTCCCTATTCTGTCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTTTGGGAACACGCTGACTTGTTCTTTCCCTATTCTGTCTCAGT  250

seq1  CTCAAGGAGGCATAGATAACCCAAGAACCTACAGCCTTTGCAGCTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGAGGCATAGATAACCCAAGAACCTACAGCCTTTGCAGCTGGGAG  300

seq1  AGCTTTGTCCTAGACACAAGGCAGTTTAATTTCCCAGACGCCCCCGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCCTAGACACAAGGCAGTTTAATTTCCCAGACGCCCCCGTGTG  350

seq1  ATGAACAGAGAAAGTCAGAGTGGCTACCCATTTTACAGTTAGAGATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAGAAAGTCAGAGTGGCTACCCATTTTACAGTTAGAGATGCTG  400

seq1  AAAATTAGAAAAGCTGTGTTGTCCATGGGGACTGGATTGTTCCTACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAAAAGCTGTGTTGTCCATGGGGACTGGATTGTTCCTACTTCT  450

seq1  GTATCATAGGACTTGGGAGGGTGGGGTGCCCTTTAAGGACAGAGGATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATAGGACTTGGGAGGGTGGGGTGCCCTTTAAGGACAGAGGATAGT  500

seq1  GTGAAGTTACACTTGTGGAATTTCGGATAAAAGCCCCTCTGAGCCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTACACTTGTGGAATTTCGGATAAAAGCCCCTCTGAGCCCCTCT  550

seq1  GGGCCTCCTGTCCCAAACAAGTGGAGGGGAAACTGCTAGAGCCCTGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCTGTCCCAAACAAGTGGAGGGGAAACTGCTAGAGCCCTGTACT  600

seq1  GTGCTCTTCCTCCAACTCTTTCTTGCCAGAGTCTAGGGTGTGTCCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTCCTCCAACTCTTTCTTGCCAGAGTCTAGGGTGTGTCCTTCCT  650

seq1  GCCTACCCTCTCCTTTCTGCAGTGCAGTCCCTATCTCCACCTTCCTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCCTCTCCTTTCTGCAGTGCAGTCCCTATCTCCACCTTCCTCCAA  700

seq1  ATGGAAGGCTGCTGAGGCAGGGGAAGCCATGGGACAGCGAGGTGGAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGCTGCTGAGGCAGGGGAAGCCATGGGACAGCGAGGTGGAACCT  750

seq1  CACAGCTCCAGCATGCTGCTAGTTTATACCATTTATCAGAGGAATTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCCAGCATGCTGCTAGTTTATACCATTTATCAGAGGAATTGCAA  800

seq1  AAAGAAGCAATGCGGTGGTTTTAATTACTCTGCATAGAGCAGGCTATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCAATGCGGTGGTTTTAATTACTCTGCATAGAGCAGGCTATCAA  850

seq1  ACACCCAGAGCGTTAATTACAGACTCCACAGCCAGGATGGACAGAGCGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGAGCGTTAATTACAGACTCCACAGCCAGGATGGACAGAGCGTG  900

seq1  CCACAGCCTTGTCTGTATCCTTACATTCAGTAAAGCCATCTCCACCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCTTGTCTGTATCCTTACATTCAGTAAAGCCATCTCCACCATCT  950

seq1  CCAGGTATCTTCTAGGGCATCCAGGAAGGAGCGTGGAAACCACACCACCA  1000
      ||||||||| ||||||||||||||  | |||||| |||||||||||||||
seq2  CCAGGTATC-TCTAGGGCATCCAG--ATGAGCGT-GAAACCACACCACCA  996

seq1  G-TCTTCCTCCAGGCAGAGGGCAGATTGCATAGGAAAGCAGGGCACAAGG  1049
      | |||||||||||||||||||||||||||||| ||||||| ||||||  |
seq2  GTTCTTCCTCCAGGCAGAGGGCAGATTGCATA-GAAAGCA-GGCACA--G  1042

seq1  GTGGGAGAGATGGGGCAGAAGGGAGAAGTTTTAAAGACTTTGAGGAAAGA  1099
      |||||||||||||||||||| |||| |||||  |||||||||| |||   
seq2  GTGGGAGAGATGGGGCAGAA-GGAG-AGTTT--AAGACTTTGAAGAA--G  1086

seq1  AAAATGAGTGTTATTTAGGGAGCCCATCTAGACCA  1134
      ||||||| ||||||||| ||||||  |||||||||
seq2  AAAATGA-TGTTATTTAAGGAGCCATTCTAGACCA  1120