BAC Information

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BAC

Clone NameB6Ng01-297P19
Chromosome8 (Build37)
Map Location 17,919,428 - 18,063,165
singlet/doubletdoublet
Overlap geneLOC665638
Upstream geneCsmd1
Downstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297P19.bB6Ng01-297P19.g
ACCGA093211GA093212
length1,095544
definitionB6Ng01-297P19.b B6Ng01-297P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,919,428 - 17,920,861)(18,062,616 - 18,063,165)
sequence
gaattctttctgtagaccaggctgacctccaaggaaagccacctgcctct
gtctaacaagtactggaattagacgcgtgtacttccaccaccatgcagtt
taccctagttttaatgatgattatatggttatatattttacaaagaactg
tgtgtctaaaaatggttttatttgatttgatgtttcacctaagacttatc
agatacatcggactttagggcaaatgctcagcagagaaataattacttag
ccaatttaacatgctgcacagccttatcaaagtcactgcagttttttttt
ttttttcaaatgctctggccacatcaggtaatgagagtaagtatacatta
acagataaacatccaacccagaccaaattagttgtcagaaaatgccttgc
agaattaataacaaaggttaatgcacattcattccacagttgtctatcgt
aagattttacaaactataaagtatctaccatcatcaaccttgctgtttcc
caatgtgatcgtaacagaaataaactcccagctctaaggaatgcggagaa
acgattgcggctgggtggggttctgactaatttcgattaactagtctact
gaacattactatggaaaatgaaacagaagagagacataaaagataaatta
aaattataaaattggaggcattaacaataaatctggagtgttctgtatct
gatgtgtgtttaggctctagtaactgcttctgtttcacagacatgcaagt
gtatgaggaaatgtgttaattttaatcaactactcatactatcctgttat
ttgatttttttgggggggggggcatagaattcttcctgaattccaactta
ggctctttgactattgcatacaccatttttaaacatatgcagaagactgt
caatatggagttgaaactaggggctctattatcatcagcatacaacagtt
tgtgccacaggaggaaagcattactaaggtaagggtttatttgaaacaag
actttgtagtagacaaagtctatgcctttcttggagtgagtcagatgact
aatgaccagagtggatgaatgcagtgaatagagcttagattagga
tctagcctgggaaatgcttttgacttccaaagcaccaaattctccagcaa
aacagtgaggttttggagacataagggtctgtgtttacagcctagagtaa
ggaatgcccatttgggaatctgtgttgcaactgtaaatgtggccatagtg
tgactgtttagagtaatgaacagacgaaggaggtagagttcagaagtaga
actttggactatgtcggatttaaattatcacaatgcaggatactaggaga
ataggaaggaactgaggagaggtctgtgtagtatttccaaggaaactgtc
acacagagagtcaatggccttcctctttactcactcatttacttggctgt
ttaaggggtgatgtctttagagagtcttggtctttgggtaacagagtggg
gagaagaaaacacagtcttgctattgttcagcgtcattgaaacaaagagg
aaaaatatcttattctgatttctgtcaggaatccacgttgaaaggggtca
ggatagtctatatttgtgtgtgtgtgtatgtgtgtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17919428_17920861
seq2: B6Ng01-297P19.b_50_1144

seq1  GAATTCTTTCTGTAGACCAGGCTGACCTCCAAGGAAAGCCACCTGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTAGACCAGGCTGACCTCCAAGGAAAGCCACCTGCCTCT  50

seq1  GTCTAACAAGTACTGGAATTAGACGCGTGTACTTCCACCACCATGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACAAGTACTGGAATTAGACGCGTGTACTTCCACCACCATGCAGTT  100

seq1  TACCCTAGTTTTAATGATGATTATATGGTTATATATTTTACAAAGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAGTTTTAATGATGATTATATGGTTATATATTTTACAAAGAACTG  150

seq1  TGTGTCTAAAAATGGTTTTATTTGATTTGATGTTTCACCTAAGACTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTAAAAATGGTTTTATTTGATTTGATGTTTCACCTAAGACTTATC  200

seq1  AGATACATCGGACTTTAGGGCAAATGCTCAGCAGAGAAATAATTACTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATCGGACTTTAGGGCAAATGCTCAGCAGAGAAATAATTACTTAG  250

seq1  CCAATTTAACATGCTGCACAGCCTTATCAAAGTCACTGCAGTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTAACATGCTGCACAGCCTTATCAAAGTCACTGCAGTTTTTTTTT  300

seq1  TTTTTTCAAATGCTCTGGCCACATCAGGTAATGAGAGTAAGTATACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAATGCTCTGGCCACATCAGGTAATGAGAGTAAGTATACATTA  350

seq1  ACAGATAAACATCCAACCCAGACCAAATTAGTTGTCAGAAAATGCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAACATCCAACCCAGACCAAATTAGTTGTCAGAAAATGCCTTGC  400

seq1  AGAATTAATAACAAAGGTTAATGCACATTCATTCCACAGTTGTCTATCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATAACAAAGGTTAATGCACATTCATTCCACAGTTGTCTATCGT  450

seq1  AAGATTTTACAAACTATAAAGTATCTACCATCATCAACCTTGCTGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTACAAACTATAAAGTATCTACCATCATCAACCTTGCTGTTTCC  500

seq1  CAATGTGATCGTAACAGAAATAAACTCCCAGCTCTAAGGAATGCGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATCGTAACAGAAATAAACTCCCAGCTCTAAGGAATGCGGAGAA  550

seq1  ACGATTGCGGCTGGGTGGGGTTCTGACTAATTTCGATTAACTAGTCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTGCGGCTGGGTGGGGTTCTGACTAATTTCGATTAACTAGTCTACT  600

seq1  GAACATTACTATGGAAAATGAAACAGAAGAGAGACATAAAAGATAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTACTATGGAAAATGAAACAGAAGAGAGACATAAAAGATAAATTA  650

seq1  AAATTATAAAATTGGAGGCATTAACAATAAATCTGGAGTGTTCTGTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAAATTGGAGGCATTAACAATAAATCTGGAGTGTTCTGTATCT  700

seq1  GATGTGTGTTTAGGCTCTAGTAACTGCTTCTGTTTCACAGACATGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGTTTAGGCTCTAGTAACTGCTTCTGTTTCACAGACATGCAAGT  750

seq1  GTATGAGGAAATGTGTTAATTTTAATCAACTACTCATACTATCCTGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGAAATGTGTTAATTTTAATCAACTACTCATACTATCCTGTTAT  800

seq1  TTGATTTTTTT-GGGGGGGGGGCATAGAATTCTTCCTGAATTCCAACTTA  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTGGGGGGGGGGGCATAGAATTCTTCCTGAATTCCAACTTA  850

seq1  GGCTCTTTGACTATTGCATACACCATTTTTAAACATATGCAGAAGACTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTGACTATTGCATACACCATTTTTAAACATATGCAGAAGACTGT  900

seq1  CAATATGGAGTTGAAACTAGGGGCTCTATTATCAATCAAGCATACAACAG  949
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  CAATATGGAGTTGAAACTAGGGGCTCTATTATC-ATC-AGCATACAACAG  948

seq1  TTTGTGCCACAAGAGGAAAGCAATTACTAAGGTAAAGGGTTTATTTGAAA  999
      ||||||||||| ||||||||| ||||||||||| ||||||||||||||||
seq2  TTTGTGCCACAGGAGGAAAGC-ATTACTAAGGT-AAGGGTTTATTTGAAA  996

seq1  CAAGACTTTGTAGTAGACAAAAGTCTATGCCTTTCTT-GAGTGAGTCAGA  1048
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CAAGACTTTGTAGTAGAC-AAAGTCTATGCCTTTCTTGGAGTGAGTCAGA  1045

seq1  TTGACTAATGACACAGAGTTGATGATAGCAGTGACCAGAGC-TAGA-TAG  1096
       ||||||||||| |||||| |||||  |||||||  ||||| |||| |||
seq2  -TGACTAATGAC-CAGAGTGGATGAATGCAGTGAATAGAGCTTAGATTAG  1093

seq1  GAGTGATGTCAACTCCAAGCCTCCAATGCTGGGGAAGAAATTCTGTCTCT  1146
      ||                                                
seq2  GA------------------------------------------------  1095

seq1  GAGAGTCACCATCAGACTGTGTTTCACAAAATCATTCAGTCGCTCATTGA  1196
                                                        
seq2  --------------------------------------------------  1095

seq1  CCTCCAGGGTCAGGGGTAAGGGTCAATGTTGCTGGATAAAGCATACTAGA  1246
                                                        
seq2  --------------------------------------------------  1095

seq1  ATGCAGAAGGAATAACCAAAGTCTATGAAGAAAGAAGTTATAAAATGCAG  1296
                                                        
seq2  --------------------------------------------------  1095

seq1  ACCTGAGAGTTCACACAGACGCATCTAATACATATGTATGAATATGACTG  1346
                                                        
seq2  --------------------------------------------------  1095

seq1  CATGTTTGCATCATTATCTTCTAGACCTGAAGTTAGTGCTTTGTATATTA  1396
                                                        
seq2  --------------------------------------------------  1095

seq1  AAGAGCAATCACTACTGGCATTATATCTTAGATTAGGA  1434
                                            
seq2  --------------------------------------  1095

seq1: chr8_18062616_18063165
seq2: B6Ng01-297P19.g_65_614 (reverse)

seq1  TACACACACACACACATACACACACACACAAATATAGACTATCCTGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACATACACACACACACAAATATAGACTATCCTGACCC  50

seq1  CTTTCAACGTGGATTCCTGACAGAAATCAGAATAAGATATTTTTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACGTGGATTCCTGACAGAAATCAGAATAAGATATTTTTCCTCTT  100

seq1  TGTTTCAATGACGCTGAACAATAGCAAGACTGTGTTTTCTTCTCCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAATGACGCTGAACAATAGCAAGACTGTGTTTTCTTCTCCCCACT  150

seq1  CTGTTACCCAAAGACCAAGACTCTCTAAAGACATCACCCCTTAAACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCCAAAGACCAAGACTCTCTAAAGACATCACCCCTTAAACAGCC  200

seq1  AAGTAAATGAGTGAGTAAAGAGGAAGGCCATTGACTCTCTGTGTGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGAGTGAGTAAAGAGGAAGGCCATTGACTCTCTGTGTGACAGT  250

seq1  TTCCTTGGAAATACTACACAGACCTCTCCTCAGTTCCTTCCTATTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGAAATACTACACAGACCTCTCCTCAGTTCCTTCCTATTCTCCT  300

seq1  AGTATCCTGCATTGTGATAATTTAAATCCGACATAGTCCAAAGTTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTGCATTGTGATAATTTAAATCCGACATAGTCCAAAGTTCTACT  350

seq1  TCTGAACTCTACCTCCTTCGTCTGTTCATTACTCTAAACAGTCACACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCTACCTCCTTCGTCTGTTCATTACTCTAAACAGTCACACTAT  400

seq1  GGCCACATTTACAGTTGCAACACAGATTCCCAAATGGGCATTCCTTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTTACAGTTGCAACACAGATTCCCAAATGGGCATTCCTTACTC  450

seq1  TAGGCTGTAAACACAGACCCTTATGTCTCCAAAACCTCACTGTTTTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTAAACACAGACCCTTATGTCTCCAAAACCTCACTGTTTTGCTG  500

seq1  GAGAATTTGGTGCTTTGGAAGTCAAAAGCATTTCCCAGGCTAGAGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTGGTGCTTTGGAAGTCAAAAGCATTTCCCAGGCTAGAGAATTC  550