BAC Information

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BAC

Clone NameB6Ng01-300N11
Chromosome8 (Build37)
Map Location 106,780,666 - 106,942,651
singlet/doubletdoublet
Overlap geneCklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4
Upstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5, Bean, Tk2
Downstream geneDync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300N11.bB6Ng01-300N11.g
ACCGA095312GA095313
length6301,101
definitionB6Ng01-300N11.b B6Ng01-300N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,942,022 - 106,942,651)(106,780,666 - 106,781,765)
sequence
gaattcttgcaaagacactgcctaatagtgtgattttgaaaccttgatac
aaaagttaaagtgtatcactggaacgggtaggcactttttgtgttgatgt
caagtgtgctctaaccaactgaggaaatgctgaggtcggagtgggaggga
ggcttggagaccattgtgttattcctttgatacttggatgcgcctagttt
cagaagaaactgatgcgtgttgtcatgtgctcagtagttgccaaagtcca
ccagctttgcggagcttcagggttttttgggggtttgaggagatgaggta
atttttattattttaggagtttcaagcattggaaccaaaggccaaataat
aaacagcctttactttttagagtaaaattaattctatttgcaagaataca
cttgcatggtagactataaaagacaattttatgactatttatacacatta
taatgattacctctgtttgtctttaaatggataattttaagtaagcccag
cctaaaaattatagcccacatgagggctgtgaattggtctttcctaaaaa
tccaacatatatgctgctagattattttattttatttgcattttttttaa
taacagggagggtttctttgtattgccctg
gaattcaggcagccaggatgcagatgtttttgagaagcagcaagaagcag
aaaaccaacaaacaagcagaacagaataggatttgtctggggaagaggtg
aaaggaaagggctttgggaggagtgttttacagaagacaacctagatgtc
ttagaggaagacgaagagatgagctggccgaggagggcagaccgagaggg
agaggagacaattggaggggacagacctgagagcacagtgcagtgattag
ctgcacttgaacaggtcacttagtcctctaaaccacaagcaggactcagt
acccacgttagccatgcctctcctttctacaatgtgtgacagaaatctta
ttggttttagacctcatttgggggctagggatatgtgtaacttcatggta
cagcactcactacctgagaccctggatccaacccccagtaccacacatgc
acccaacctccccataggaactaaacccattgtatgatcaatgactaagt
ctttgttttcttctgctaggtggtaactgtgacatctatgatctttttca
tcgtgggacaagcccctgaaccatatatcgtcatcactgggtttgaagtc
accgttattttctgtttcctagtcttatacacgtgtggacttgacaagat
aatgagatctttcttttggcctttgcttgtaagtgatgaacttcaacctt
aaaccttaactacctttcctgccttaggaagacaccttagtcaactactt
ggatctcctaaatatttaaggtgatctctgctcactgctaatcaatccaa
gcttgggggatgctctcagggattcaggatacccacagaacataaattct
ctttattgtttgtaccagtaggtatggctgacctttccatttgaagaatt
ctcttaagtatgaatgtcctaaagaatttagatttagagccatgaaccat
gttaataaattagagcatgtttttaacttttggcccccccccccaccttt
cttttcttgctttttttcttttattaaaaaataagcccgggcgtgtgtgc
acggtctttattcagcacttcggagcagagcagcagatttctgagttcga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106942022_106942651
seq2: B6Ng01-300N11.b_51_680 (reverse)

seq1  CAGGGCAATACAAAGAAACCCTCCCTGTTATTAAAAAAAATGCAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAATACAAAGAAACCCTCCCTGTTATTAAAAAAAATGCAAATAAA  50

seq1  ATAAAATAATCTAGCAGCATATATGTTGGATTTTTAGGAAAGACCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATCTAGCAGCATATATGTTGGATTTTTAGGAAAGACCAATTC  100

seq1  ACAGCCCTCATGTGGGCTATAATTTTTAGGCTGGGCTTACTTAAAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTCATGTGGGCTATAATTTTTAGGCTGGGCTTACTTAAAATTAT  150

seq1  CCATTTAAAGACAAACAGAGGTAATCATTATAATGTGTATAAATAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAGACAAACAGAGGTAATCATTATAATGTGTATAAATAGTCAT  200

seq1  AAAATTGTCTTTTATAGTCTACCATGCAAGTGTATTCTTGCAAATAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTCTTTTATAGTCTACCATGCAAGTGTATTCTTGCAAATAGAAT  250

seq1  TAATTTTACTCTAAAAAGTAAAGGCTGTTTATTATTTGGCCTTTGGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACTCTAAAAAGTAAAGGCTGTTTATTATTTGGCCTTTGGTTCC  300

seq1  AATGCTTGAAACTCCTAAAATAATAAAAATTACCTCATCTCCTCAAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGAAACTCCTAAAATAATAAAAATTACCTCATCTCCTCAAACCC  350

seq1  CCAAAAAACCCTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACCCTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGA  400

seq1  GCACATGACAACACGCATCAGTTTCTTCTGAAACTAGGCGCATCCAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGACAACACGCATCAGTTTCTTCTGAAACTAGGCGCATCCAAGTA  450

seq1  TCAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCA  500

seq1  GCATTTCCTCAGTTGGTTAGAGCACACTTGACATCAACACAAAAAGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTCAGTTGGTTAGAGCACACTTGACATCAACACAAAAAGTGCC  550

seq1  TACCCGTTCCAGTGATACACTTTAACTTTTGTATCAAGGTTTCAAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGTTCCAGTGATACACTTTAACTTTTGTATCAAGGTTTCAAAATCA  600

seq1  CACTATTAGGCAGTGTCTTTGCAAGAATTC  630
      ||||||||||||||||||||||||||||||
seq2  CACTATTAGGCAGTGTCTTTGCAAGAATTC  630

seq1: chr8_106780666_106781765
seq2: B6Ng01-300N11.g_68_1168

seq1  GAATTCAGGCAGCCAGGATGCAGATGTTTTTGAGAAGCAGCAAGAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGCCAGGATGCAGATGTTTTTGAGAAGCAGCAAGAAGCAG  50

seq1  AAAACCAACAAACAAGCAGAACAGAATAGGATTTGTCTGGGGAAGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAACAAACAAGCAGAACAGAATAGGATTTGTCTGGGGAAGAGGTG  100

seq1  AAAGGAAAGGGCTTTGGGAGGAGTGTTTTACAGAAGACAACCTAGATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGGCTTTGGGAGGAGTGTTTTACAGAAGACAACCTAGATGTC  150

seq1  TTAGAGGAAGACGAAGAGATGAGCTGGCCGAGGAGGGCAGACCGAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAAGACGAAGAGATGAGCTGGCCGAGGAGGGCAGACCGAGAGGG  200

seq1  AGAGGAGACAATTGGAGGGGACAGACCTGAGAGCACAGTGCAGTGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGACAATTGGAGGGGACAGACCTGAGAGCACAGTGCAGTGATTAG  250

seq1  CTGCACTTGAACAGGTCACTTAGTCCTCTAAACCACAAGCAGGACTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTGAACAGGTCACTTAGTCCTCTAAACCACAAGCAGGACTCAGT  300

seq1  ACCCACGTTAGCCATGCCTCTCCTTTCTACAATGTGTGACAGAAATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGTTAGCCATGCCTCTCCTTTCTACAATGTGTGACAGAAATCTTA  350

seq1  TTGGTTTTAGACCTCATTTGGGGGCTAGGGATATGTGTAACTTCATGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAGACCTCATTTGGGGGCTAGGGATATGTGTAACTTCATGGTA  400

seq1  CAGCACTCACTACCTGAGACCCTGGATCCAACCCCCAGTACCACACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCACTACCTGAGACCCTGGATCCAACCCCCAGTACCACACATGC  450

seq1  ACCCAACCTCCCCATAGGAACTAAACCCATTGTATGATCAATGACTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCTCCCCATAGGAACTAAACCCATTGTATGATCAATGACTAAGT  500

seq1  CTTTGTTTTCTTCTGCTAGGTGGTAACTGTGACATCTATGATCTTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTCTTCTGCTAGGTGGTAACTGTGACATCTATGATCTTTTTCA  550

seq1  TCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAAGTC  600

seq1  ACCGTTATTTTCTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTATTTTCTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGAT  650

seq1  AATGAGATCTTTCTTTTGGCCTTTGCTTGTAAGTGATGAACTTCAACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTTTCTTTTGGCCTTTGCTTGTAAGTGATGAACTTCAACCTT  700

seq1  AAACCTTAACTACCTTTCCTGCCTTAGGAAGACACCTTAGTCAACTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAACTACCTTTCCTGCCTTAGGAAGACACCTTAGTCAACTACTT  750

seq1  GGATCTCCTAAATATTTAAGGTGATCTCTGCTCACTGCTAATCAATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCTAAATATTTAAGGTGATCTCTGCTCACTGCTAATCAATCCAA  800

seq1  GCTTGGGGGATGCTCTCAGGGATTCAGGATACCCACAGAACATAAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGATGCTCTCAGGGATTCAGGATACCCACAGAACATAAATTCT  850

seq1  CTTTATTGTTTGTACCAGTAGGTATGGCTGACCTTTCCATTTGAAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTTTGTACCAGTAGGTATGGCTGACCTTTCCATTTGAAGAATT  900

seq1  CTCTTAAGTATGAATGTCCTAAAGAAATTTAGATTTAGAGCCATGAACCA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCTTAAGTATGAATGTCCTAAAG-AATTTAGATTTAGAGCCATGAACCA  949

seq1  TGTTAATAAATTAGAGCATGTTTTTAACTTTTGGCCCCCCCCCACTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||| |  |||
seq2  TGTTAATAAATTAGAGCATGTTTTTAACTTTTGGCCCCCCCCCCCACCTT  999

seq1  TC------TGCTTTTTTTCTTTTATT-AAAAATAAG-CCGGGCGTGGTGG  1042
      ||      |||||||||||||||||| ||||||||| |||||||||   |
seq2  TCTTTTCTTGCTTTTTTTCTTTTATTAAAAAATAAGCCCGGGCGTG--TG  1047

seq1  TGCAC-GTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCT  1091
      ||||| |||||||  | |||||||  ||| ||||| ||| ||||||||||
seq2  TGCACGGTCTTTA--TTCAGCACTTCGGA-GCAGA-GCA-GCAGATTTCT  1092

seq1  GAGTTCGAG  1100
      |||||||||
seq2  GAGTTCGAG  1101